MD05G1242700.v1.1

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
37545321 .. 37547888
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1242700.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGTCATTCCAACTCTTTGCTTTGATATTTATACCCTTCTCAAATCATGAGAGTGGAAACTTGGTGAATGAAGGAAAAATCCCAAAAAATCGACTTGCTCTTAAACTGCTGGCTGCAGAAATGAATCAATGGCCTAATCTAGAGGTTCAGATTACACCAGCGAAGAAAAAGCCTGGTAAGTCCCTGTATGCAAGAGCGACCGACACTGGTATTGATCTTCAAGAGGCTGCTAAGAGACTGAAGATTGATTGGGATACAGCTGCTGAGATTGATGATGGTGATCTTAAAGATGAAAATGAAGTGCCGTCGGTTTTGGGCTATGGAGCACTGTACTTAGTCACAGCTTTCCCCGTCATTATTGGTGTATCAGTGTCCAAATCCCAGACTTGTTCCTCAGGATTTCTGCTTTTCTCGACCATGGATTATCCGTTTTCGGGCGATATAAGTGACTACTTTACTCTTGGAGATCTAGAAAAACAGATTTCTGTAGATCCAATATCACTGAAAGAATCATCACACAGAGAAGTGAGTGCTGAACCGGTGGTGGAGGTGCCGGTTGTTGCTGCTCCAAAGCCGAATGCACTTGACCAACGACCGCCCCTGCTGCCGCCTGCAAACCCCAAGTTCTTAAGCTTCAGTCTCCCAAACTCAGCAACCTCATCGCCGCGAGTGAAGAAGAAATGGAAAGACGAAAGCCAGGCATCTCCTCGGCAGCAACTGGAGAATCTGAGCCACCTGCAACAAGAAATTGAGTTCCGGCGGAGCAAGTCATGTGGTCAAGGGAGGACATTTGCCCCGTCAGTTGACTTTGATCTCTTGCTGATCAAACCAAATGCCGCCGAAATAGTCTCCAGGCACTACAGCAGCCTCTTCAGGGCCGAGTCCAACAGAGTTGCTCATAAAAATGGCAATAACAGGGACCCACACGACGATGAGTTCACGTGTGGGGCCCTGTGCTTGTCCATCCCTGGCTTTGGCAAGGCAAAGGCAGTGAGAGCAAGAAAGGTAGAGCCTGATGAACTGGGAAATGTCATATCCAGGACAGTTTCCTTGGAAAAGTTTGAATGTGGCTCTTGGGCTTCAGCTATGATAAATGAGCAGGAAGATGACAACACCAGTCGCTACTTTGATCTGCCATTGGAGCTGATACGAAGCAGCGTCAACGAGGCAGATTCGCCAATTTCAGCATCTTTTGTGTTTGACACGGATCGAAAGGGTGCCCAAAAGAATGGATCAACAAGAGCACAAGGCCGGAAATCACACGAATCATCGCGCAGCGTTCGGTTTTCTACATCATCAGATGCTGCATCACCAACTGCTTGCGTTACGCCTCGCTTGCGCAAAGCTAGGGATGATTTCAAAGCTTTCTTAGAAGCACAGAGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

50.92

Weight (kDa)

6.44

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 744
Acc16I TGCGCA 1 cut(s) 1340
Acc36I ACCTGC 1 cut(s) 744
AccB1I GGYRCC 2 cut(s) 550, 1217
AccII CGCG 2 cut(s) 667, 1273
AciI CCGC 5 cut(s) 596, 608, 665, 760, 837
AclWI GGATC 3 cut(s) 485, 1215, 1240
AcuI CTGAAG 4 cut(s) 260, 619, 856, 1065
AcvI CACGTG 1 cut(s) 942
AfaI GTAC 2 cut(s) 332, 1384
AfiI CCNNNNNNNGG 3 cut(s) 434, 874, 974
AflII CTTAAG 1 cut(s) 628
AflIII ACRYGT 1 cut(s) 941
AgeI ACCGGT 1 cut(s) 538
AgsI TTSAA 3 cut(s) 221, 1064, 1360
AjnI CCWGG 5 cut(s) 172, 696, 851, 967, 1037
AluBI AGCT 7 cut(s) 260, 344, 633, 1085, 1144, 1346, 1364
AluI AGCT 7 cut(s) 260, 344, 633, 1085, 1144, 1346, 1364
Alw21I GWGCWC 2 cut(s) 328, 1246
Alw26I GTCTC 3 cut(s) 229, 644, 853
AlwI GGATC 3 cut(s) 485, 1215, 1240
AlwNI CAGNNNCTG 3 cut(s) 263, 718, 1304
AoxI GGCC 4 cut(s) 131, 876, 948, 1249
ApaI GGGCCC 1 cut(s) 952
AsiGI ACCGGT 1 cut(s) 538
AspLEI GCGC 2 cut(s) 1275, 1341
AspS9I GGNCC 4 cut(s) 876, 919, 948, 949
AsuHPI GGTGA 3 cut(s) 76, 290, 1302
AvaII GGWCC 1 cut(s) 919
AxyI CCTNAGG 1 cut(s) 394
BaeGI GKGCMC 2 cut(s) 952, 1222
BanI GGYRCC 2 cut(s) 550, 1217
BanII GRGCYC 1 cut(s) 952
BbrPI CACGTG 1 cut(s) 942
Bbv12I GWGCWC 2 cut(s) 328, 1246
BccI CCATC 2 cut(s) 269, 971
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 642, 676
BciT130I CCWGG 5 cut(s) 174, 698, 853, 969, 1039
BciVI GTATCC 1 cut(s) 247
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 229, 644, 853
BfaI CTAG 3 cut(s) 140, 470, 1347
BfmI CTRYAG 3 cut(s) 114, 486, 859
BfrI CTTAAG 1 cut(s) 628
BfuAI ACCTGC 1 cut(s) 744
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 1 cut(s) 466
Bme1390I CCNGG 5 cut(s) 174, 698, 853, 969, 1039
Bme18I GGWCC 1 cut(s) 919
BmgT120I GGNCC 4 cut(s) 876, 919, 948, 949
BmiI GGNNCC 6 cut(s) 552, 920, 921, 949, 950, 1219
BmrFI CCNGG 5 cut(s) 174, 698, 853, 969, 1039
BmrI ACTGGG 1 cut(s) 1031
BmsI GCATC 4 cut(s) 710, 1196, 1291, 1316
BmuI ACTGGG 1 cut(s) 1031
BpmI CTGGAG 2 cut(s) 740, 835
BsaAI YACGTR 1 cut(s) 942
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 4 cut(s) 417, 707, 967, 1050
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 874, 974
Bse118I RCCGGY 2 cut(s) 538, 553
Bse1I ACTGG 4 cut(s) 211, 723, 1026, 1116
Bse21I CCTNAGG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 5 cut(s) 174, 698, 853, 969, 1039
BseDI CCNNGG 4 cut(s) 417, 707, 967, 1050
BseGI GGATG 2 cut(s) 963, 1357
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 3 cut(s) 434, 874, 974
BseMII CTCAG 4 cut(s) 255, 408, 663, 719
BseNI ACTGG 4 cut(s) 211, 723, 1026, 1116
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 2 cut(s) 952, 1222
Bsh1236I CGCG 2 cut(s) 667, 1273
Bsh1285I CGRYCG 2 cut(s) 201, 596
BshFI GGCC 4 cut(s) 133, 878, 950, 1251
BshNI GGYRCC 2 cut(s) 550, 1217
BshTI ACCGGT 1 cut(s) 538
BsiEI CGRYCG 2 cut(s) 201, 596
BsiHKAI GWGCWC 2 cut(s) 328, 1246
BsiSI CCGG 4 cut(s) 539, 554, 757, 1252
BslFI GGGAC 2 cut(s) 166, 932
BslI CCNNNNNNNGG 3 cut(s) 434, 874, 974
BsmAI GTCTC 3 cut(s) 229, 644, 853
BsmFI GGGAC 2 cut(s) 166, 932
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 4 cut(s) 133, 878, 950, 1251
Bsp120I GGGCCC 1 cut(s) 948
Bsp1286I GDGCHC 4 cut(s) 328, 952, 1222, 1246
Bsp143I GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 5 cut(s) 596, 608, 665, 760, 837
BspANI GGCC 4 cut(s) 133, 878, 950, 1251
BspCNI CTCAG 4 cut(s) 256, 407, 662, 720
BspFNI CGCG 2 cut(s) 667, 1273
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 6 cut(s) 552, 920, 921, 949, 950, 1219
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 744
BspPI GGATC 3 cut(s) 485, 1215, 1240
BspT107I GGYRCC 2 cut(s) 550, 1217
BspTI CTTAAG 1 cut(s) 628
BsrFI RCCGGY 2 cut(s) 538, 553
BsrI ACTGG 4 cut(s) 211, 723, 1026, 1116
BssAI RCCGGY 2 cut(s) 538, 553
BssECI CCNNGG 4 cut(s) 417, 707, 967, 1050
BssMI GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
BssT1I CCWWGG 2 cut(s) 417, 1050
Bst2UI CCWGG 5 cut(s) 174, 698, 853, 969, 1039
Bst4CI ACNGT 2 cut(s) 330, 1045
Bst6I CTCTTC 1 cut(s) 875
BstAFI CTTAAG 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 942
BstC8I GCNNGC 4 cut(s) 111, 612, 1321, 1337
BstDEI CTNAG 7 cut(s) 231, 264, 334, 394, 649, 728, 1369
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 963, 1357
BstFNI CGCG 2 cut(s) 667, 1273
BstHHI GCGC 2 cut(s) 1275, 1341
BstKTI GATC 9 cut(s) 217, 283, 469, 493, 814, 825, 1132, 1210, 1235
BstMAI GTCTC 3 cut(s) 229, 644, 853
BstMBI GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
BstMCI CGRYCG 2 cut(s) 201, 596
BstMWI GCNNNNNNNGC 4 cut(s) 604, 995, 1141, 1336
BstNI CCWGG 5 cut(s) 174, 698, 853, 969, 1039
BstSCI CCNGG 5 cut(s) 172, 696, 851, 967, 1037
BstSFI CTRYAG 3 cut(s) 114, 486, 859
BstSLI GKGCMC 2 cut(s) 952, 1222
BstUI CGCG 2 cut(s) 667, 1273
BstX2I RGATCY 2 cut(s) 466, 490
BstXI CCANNNNNNTGG 1 cut(s) 1229
BstYI RGATCY 2 cut(s) 466, 490
Bsu36I CCTNAGG 1 cut(s) 394
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 4 cut(s) 133, 878, 950, 1251
BtgI CCRYGG 1 cut(s) 417
BtgZI GCGATG 2 cut(s) 645, 1254
BtsCI GGATG 2 cut(s) 963, 1357
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 5 cut(s) 204, 326, 375, 500, 996
BveI ACCTGC 1 cut(s) 744
Cac8I GCNNGC 4 cut(s) 111, 612, 1321, 1337
CaiI CAGNNNCTG 3 cut(s) 263, 718, 1304
CciI TCATGA 1 cut(s) 46
CfoI GCGC 2 cut(s) 1275, 1341
Cfr10I RCCGGY 2 cut(s) 538, 553
Cfr13I GGNCC 4 cut(s) 876, 919, 948, 949
CseI GACGC 1 cut(s) 1147
Csp6I GTAC 2 cut(s) 331, 1383
CspAI ACCGGT 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 3 cut(s) 47, 418, 771
CviQI GTAC 2 cut(s) 331, 1383
DdeI CTNAG 7 cut(s) 231, 264, 334, 394, 649, 728, 1369
DpnI GATC 9 cut(s) 216, 282, 468, 492, 813, 824, 1131, 1209, 1234
DpnII GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
EciI GGCGGA 1 cut(s) 775
Eco130I CCWWGG 2 cut(s) 417, 1050
Eco24I GRGCYC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 919
Eco57I CTGAAG 4 cut(s) 260, 619, 856, 1065
Eco72I CACGTG 1 cut(s) 942
Eco81I CCTNAGG 1 cut(s) 394
EcoO109I RGGNCCY 3 cut(s) 919, 948, 949
EcoRII CCWGG 5 cut(s) 172, 696, 851, 967, 1037
EcoT14I CCWWGG 2 cut(s) 417, 1050
EcoT38I GRGCYC 1 cut(s) 952
ErhI CCWWGG 2 cut(s) 417, 1050
FaeI CATG 3 cut(s) 50, 421, 774
FaqI GGGAC 2 cut(s) 166, 932
FatI CATG 3 cut(s) 46, 417, 770
FbaI TGATCA 1 cut(s) 822
FokI GGATG 2 cut(s) 950, 1364
FriOI GRGCYC 1 cut(s) 952
FspBI CTAG 3 cut(s) 140, 470, 1347
FspI TGCGCA 1 cut(s) 1340
GlaI GCGC 2 cut(s) 1274, 1340
GsuI CTGGAG 2 cut(s) 740, 835
HaeIII GGCC 4 cut(s) 133, 878, 950, 1251
HapII CCGG 4 cut(s) 539, 554, 757, 1252
HgaI GACGC 1 cut(s) 1147
HhaI GCGC 2 cut(s) 1275, 1341
Hin1II CATG 3 cut(s) 50, 421, 774
Hin6I GCGC 2 cut(s) 1273, 1339
HinP1I GCGC 2 cut(s) 1273, 1339
HincII GTYRAC 2 cut(s) 805, 1162
HindII GTYRAC 2 cut(s) 805, 1162
HindIII AAGCTT 2 cut(s) 631, 1362
HinfI GANTC 6 cut(s) 124, 509, 724, 881, 1172, 1265
HpaII CCGG 4 cut(s) 539, 554, 757, 1252
HphI GGTGA 3 cut(s) 76, 290, 1302
Hpy166II GTNNAC 3 cut(s) 805, 939, 1162
Hpy188I TCNGA 3 cut(s) 150, 729, 1300
Hpy188III TCNNGA 6 cut(s) 47, 140, 221, 396, 412, 470
Hpy8I GTNNAC 3 cut(s) 805, 939, 1162
Hpy99I CGWCG 2 cut(s) 310, 932
HpyAV CCTTC 2 cut(s) 46, 65
HpyCH4III ACNGT 2 cut(s) 330, 1045
HpyCH4IV ACGT 1 cut(s) 941
HpyCH4V TGCA 6 cut(s) 116, 191, 581, 614, 739, 1307
HpyF10VI GCNNNNNNNGC 4 cut(s) 604, 995, 1141, 1336
HpyF3I CTNAG 7 cut(s) 231, 264, 334, 394, 649, 728, 1369
HpySE526I ACGT 1 cut(s) 941
Hsp92II CATG 3 cut(s) 50, 421, 774
HspAI GCGC 2 cut(s) 1273, 1339
KflI GGGWCCC 1 cut(s) 919
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
LmnI GCTCC 4 cut(s) 323, 571, 762, 1141
LweI GCATC 4 cut(s) 710, 1196, 1291, 1316
MaeI CTAG 3 cut(s) 140, 470, 1347
MaeII ACGT 1 cut(s) 941
MaeIII GTNAC 3 cut(s) 337, 446, 1324
MalI GATC 9 cut(s) 216, 282, 468, 492, 813, 824, 1131, 1209, 1234
MboI GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
MboII GAAGA 7 cut(s) 175, 209, 253, 685, 688, 862, 1115
MflI RGATCY 2 cut(s) 466, 490
MhlI GDGCHC 4 cut(s) 328, 952, 1222, 1246
MluCI AATT 2 cut(s) 747, 1179
MlyI GAGTC 1 cut(s) 890
MmeI TCCRAC 2 cut(s) 34, 909
MseI TTAA 3 cut(s) 102, 285, 629
MslI CAYNNNNRTG 3 cut(s) 51, 903, 930
MspA1I CMGCKG 1 cut(s) 260
MspCI CTTAAG 1 cut(s) 628
MspI CCGG 4 cut(s) 539, 554, 757, 1252
MspR9I CCNGG 5 cut(s) 174, 698, 853, 969, 1039
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 5 cut(s) 174, 698, 853, 969, 1039
MvnI CGCG 2 cut(s) 667, 1273
MwoI GCNNNNNNNGC 4 cut(s) 604, 995, 1141, 1336
NcoI CCATGG 1 cut(s) 417
NdeII GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
NlaIII CATG 3 cut(s) 50, 421, 774
NlaIV GGNNCC 6 cut(s) 552, 920, 921, 949, 950, 1219
NmeAIII GCCGAG 2 cut(s) 688, 904
NmuCI GTSAC 2 cut(s) 337, 446
NsbI TGCGCA 1 cut(s) 1340
PagI TCATGA 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 744
PctI GAATGC 1 cut(s) 583
PfeI GAWTC 5 cut(s) 124, 509, 724, 1172, 1265
PfoI TCCNGGA 1 cut(s) 1037
PinAI ACCGGT 1 cut(s) 538
PleI GAGTC 1 cut(s) 889
PmaCI CACGTG 1 cut(s) 942
PmlI CACGTG 1 cut(s) 942
PpsI GAGTC 1 cut(s) 889
Ppu21I YACGTR 1 cut(s) 942
PpuMI RGGWCCY 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 5 cut(s) 172, 696, 851, 967, 1037
PspCI CACGTG 1 cut(s) 942
PspGI CCWGG 5 cut(s) 172, 696, 851, 967, 1037
PspN4I GGNNCC 6 cut(s) 552, 920, 921, 949, 950, 1219
PspOMI GGGCCC 1 cut(s) 948
PspPI GGNCC 4 cut(s) 876, 919, 948, 949
PspPPI RGGWCCY 1 cut(s) 919
PstI CTGCAG 1 cut(s) 118
PstNI CAGNNNCTG 3 cut(s) 263, 718, 1304
PsuI RGATCY 2 cut(s) 466, 490
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 332, 1384
RsaNI GTAC 2 cut(s) 331, 1383
RseI CAYNNNNRTG 3 cut(s) 51, 903, 930
SaqAI TTAA 3 cut(s) 102, 285, 629
Sau3AI GATC 9 cut(s) 214, 280, 466, 490, 811, 822, 1129, 1207, 1232
Sau96I GGNCC 4 cut(s) 876, 919, 948, 949
SchI GAGTC 1 cut(s) 890
ScrFI CCNGG 5 cut(s) 174, 698, 853, 969, 1039
SduI GDGCHC 4 cut(s) 328, 952, 1222, 1246
SfaNI GCATC 4 cut(s) 710, 1196, 1291, 1316
SfcI CTRYAG 3 cut(s) 114, 486, 859
SinI GGWCC 1 cut(s) 919
SmiMI CAYNNNNRTG 3 cut(s) 51, 903, 930
SmlI CTYRAG 1 cut(s) 628
SmoI CTYRAG 1 cut(s) 628
Sse9I AATT 2 cut(s) 747, 1179
SsiI CCGC 5 cut(s) 596, 608, 665, 760, 837
SspMI CTAG 3 cut(s) 140, 470, 1347
StyD4I CCNGG 5 cut(s) 172, 696, 851, 967, 1037
StyI CCWWGG 2 cut(s) 417, 1050
TaaI ACNGT 2 cut(s) 330, 1045
TaiI ACGT 1 cut(s) 944
TaqI TCGA 3 cut(s) 91, 413, 1210
TaqII GACCGA 1 cut(s) 215
TasI AATT 2 cut(s) 747, 1179
TatI WGTACW 2 cut(s) 330, 1382
TauI GCSGC 3 cut(s) 610, 667, 839
TfiI GAWTC 5 cut(s) 124, 509, 724, 1172, 1265
Tru1I TTAA 3 cut(s) 102, 285, 629
Tru9I TTAA 3 cut(s) 102, 285, 629
TscAI CASTG 5 cut(s) 211, 333, 375, 507, 996
TseFI GTSAC 2 cut(s) 337, 446
Tsp45I GTSAC 2 cut(s) 337, 446
TspDTI ATGAA 5 cut(s) 84, 137, 306, 312, 1032
TspGWI ACGGA 2 cut(s) 417, 1220
TspRI CASTG 5 cut(s) 211, 333, 375, 507, 996
Vha464I CTTAAG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 919
XbaI TCTAGA 2 cut(s) 139, 469
XspI CTAG 3 cut(s) 140, 470, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.