pycom05g21920

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0007028
Physical Location & Seq
Forward (+)
24478034 .. 24479005
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21920.1

Sequence Viewer

Length: 972 bp
ATGGATTATCCGTTCTCGGGCGAAATAAGTGACTACTTTACTCTTGGAGATCTAGAAAAGCAGATTTCTGTAGATCCAATGTCACTGAAAGAATCATCACACAGAGAAGTGAGTGCTGAACCGGTGGTGGATGTGCCGGTTGTTGCTGCTCCAAAGCCGAATGCACTTGACCAACAACCGCCCCTGCTGCCGCCTGCAAACCCCAAGTTCTTAAGCTTCAGTCTCCCAAACTCAGCAACCTCATCGCCTCGAGTGAAGAAGAAATGGAAAGACGAAAGCCAGGCATCTCCTCGGCAGCAACTGGAGAATCTGAGCCACCTGCAACAAGAAATTGAGTTCCGGCGGAGCAAGTCATGTGGTCAAGGGAGGACATTTGCCCCGTCAGTTGACTTTGATCTCTGGCTGATCAAACCAAATGCCGCCGAAATAGTCTCCAGGCACTACAGCAACCTCTCCAGGGCCGAGTCCAACAGAGTTGCTCATAAAAATGGCAAGAACAGGGACCCACATGACGATGGGTTCACATGTGGGGCCCTATGCTTGTCCATCCCTGGCTTTGGCAAGGCAAAGCCAGTGAGAGCAAGAAAGGTAGAGCCTGATGAACTGGGAAATGTCATATCCAGGACAGTTTCCTTGGAAAAGTTTGAATGTGGCTCTTGGGCTTCAGCTATGATAAATGAGCAGGAAGATGACAACACCAGTCGCTACTTTGATCTGCCATTGGAGCTGATACGAAGCAGTGTCAACGAGGCAGATTCGCCAATTTCAACATCTTTTGTGTTTGGTACGGATCGAAAGGGTGCCCTGAAGAATGGATCAACAAGAGCACAAGGCCGGAAATCACACGAATCATCGCGCAGCGTTCGGTTTTCTACATCATCAGATGCTACATCACCAACTGCTTGCGTTACTCCTCGCTTGCGCAAAGCAAGAGATGATTTCAAAGCTTTCTTAGAAGCACAGAGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

35.72

Weight (kDa)

8.21

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 327
Acc16I TGCGCA 1 cut(s) 923
Acc36I ACCTGC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 800
AccII CGCG 1 cut(s) 856
AciI CCGC 4 cut(s) 179, 191, 343, 420
AclWI GGATC 3 cut(s) 68, 798, 823
AcuI CTGAAG 3 cut(s) 202, 648, 827
AfaI GTAC 2 cut(s) 787, 967
AfiI CCNNNNNNNGG 3 cut(s) 17, 457, 557
AflII CTTAAG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 524
AgeI ACCGGT 1 cut(s) 121
AgsI TTSAA 3 cut(s) 647, 768, 943
AjnI CCWGG 5 cut(s) 279, 434, 455, 550, 620
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 216, 668, 727, 947
AluI AGCT 4 cut(s) 216, 668, 727, 947
Alw21I GWGCWC 1 cut(s) 829
Alw26I GTCTC 2 cut(s) 227, 436
AlwI GGATC 3 cut(s) 68, 798, 823
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 2 cut(s) 16, 249
AoxI GGCC 3 cut(s) 459, 531, 832
ApaI GGGCCC 1 cut(s) 535
ApeKI GCWGC 4 cut(s) 146, 187, 295, 858
AsiGI ACCGGT 1 cut(s) 121
AspLEI GCGC 2 cut(s) 858, 924
AspS9I GGNCC 4 cut(s) 459, 502, 531, 532
AsuHPI GGTGA 1 cut(s) 885
AvaI CYCGRG 2 cut(s) 16, 249
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 2 cut(s) 535, 805
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 829
BbvI GCAGC 4 cut(s) 133, 174, 307, 870
BccI CCATC 2 cut(s) 509, 554
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 5 cut(s) 281, 436, 457, 552, 622
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 2 cut(s) 227, 436
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 2 cut(s) 69, 442
BfrI CTTAAG 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 327
BglII AGATCT 1 cut(s) 49
BisI GCNGC 6 cut(s) 147, 188, 191, 296, 420, 859
BlsI GCNGC 6 cut(s) 148, 189, 192, 297, 421, 860
Bme1390I CCNGG 5 cut(s) 281, 436, 457, 552, 622
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 2 cut(s) 16, 249
BmgT120I GGNCC 4 cut(s) 459, 502, 531, 532
BmiI GGNNCC 5 cut(s) 503, 504, 532, 533, 802
BmrFI CCNGG 5 cut(s) 281, 436, 457, 552, 622
BmrI ACTGGG 1 cut(s) 614
BmsI GCATC 2 cut(s) 293, 874
BmuI ACTGGG 1 cut(s) 614
BpmI CTGGAG 3 cut(s) 323, 418, 439
BsaJI CCNNGG 4 cut(s) 290, 456, 550, 633
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 457, 557
Bse118I RCCGGY 2 cut(s) 121, 136
Bse1I ACTGG 4 cut(s) 306, 572, 609, 699
BseBI CCWGG 5 cut(s) 281, 436, 457, 552, 622
BseDI CCNNGG 4 cut(s) 290, 456, 550, 633
BseGI GGATG 2 cut(s) 136, 546
BseLI CCNNNNNNNGG 3 cut(s) 17, 457, 557
BseMII CTCAG 2 cut(s) 246, 302
BseNI ACTGG 4 cut(s) 306, 572, 609, 699
BseRI GAGGAG 2 cut(s) 279, 903
BseSI GKGCMC 2 cut(s) 535, 805
BseXI GCAGC 4 cut(s) 133, 174, 307, 870
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 3 cut(s) 461, 533, 834
BshNI GGYRCC 1 cut(s) 800
BshTI ACCGGT 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 829
BsiHKCI CYCGRG 2 cut(s) 16, 249
BsiSI CCGG 4 cut(s) 122, 137, 340, 835
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 3 cut(s) 17, 457, 557
BsmAI GTCTC 2 cut(s) 227, 436
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 3 cut(s) 461, 533, 834
BsoBI CYCGRG 2 cut(s) 16, 249
Bsp120I GGGCCC 1 cut(s) 531
Bsp1286I GDGCHC 3 cut(s) 535, 805, 829
Bsp143I GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
BspACI CCGC 4 cut(s) 179, 191, 343, 420
BspANI GGCC 3 cut(s) 461, 533, 834
BspCNI CTCAG 2 cut(s) 245, 303
BspFNI CGCG 1 cut(s) 856
BspLI GGNNCC 5 cut(s) 503, 504, 532, 533, 802
BspMI ACCTGC 1 cut(s) 327
BspPI GGATC 3 cut(s) 68, 798, 823
BspT107I GGYRCC 1 cut(s) 800
BspTI CTTAAG 1 cut(s) 211
BsrFI RCCGGY 2 cut(s) 121, 136
BsrI ACTGG 4 cut(s) 306, 572, 609, 699
BssAI RCCGGY 2 cut(s) 121, 136
BssECI CCNNGG 4 cut(s) 290, 456, 550, 633
BssMI GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 5 cut(s) 281, 436, 457, 552, 622
Bst4CI ACNGT 1 cut(s) 628
BstAFI CTTAAG 1 cut(s) 211
BstC8I GCNNGC 3 cut(s) 195, 904, 920
BstDEI CTNAG 3 cut(s) 232, 311, 952
BstF5I GGATG 2 cut(s) 136, 546
BstFNI CGCG 1 cut(s) 856
BstHHI GCGC 2 cut(s) 858, 924
BstKTI GATC 7 cut(s) 52, 76, 397, 408, 715, 793, 818
BstMAI GTCTC 2 cut(s) 227, 436
BstMBI GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
BstMWI GCNNNNNNNGC 2 cut(s) 187, 724
BstNI CCWGG 5 cut(s) 281, 436, 457, 552, 622
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 5 cut(s) 279, 434, 455, 550, 620
BstSFI CTRYAG 2 cut(s) 69, 442
BstSLI GKGCMC 2 cut(s) 535, 805
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 4 cut(s) 133, 174, 307, 870
BstX2I RGATCY 2 cut(s) 49, 73
BstYI RGATCY 2 cut(s) 49, 73
BsuRI GGCC 3 cut(s) 461, 533, 834
BtgZI GCGATG 2 cut(s) 228, 837
BtsCI GGATG 2 cut(s) 136, 546
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 83, 579, 745
BveI ACCTGC 1 cut(s) 327
Cac8I GCNNGC 3 cut(s) 195, 904, 920
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 2 cut(s) 858, 924
Cfr10I RCCGGY 2 cut(s) 121, 136
Cfr13I GGNCC 4 cut(s) 459, 502, 531, 532
Csp6I GTAC 2 cut(s) 786, 966
CspAI ACCGGT 1 cut(s) 121
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 3 cut(s) 354, 509, 525
CviQI GTAC 2 cut(s) 786, 966
DdeI CTNAG 3 cut(s) 232, 311, 952
DpnI GATC 7 cut(s) 51, 75, 396, 407, 714, 792, 817
DpnII GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
EciI GGCGGA 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 502
Eco57I CTGAAG 3 cut(s) 202, 648, 827
Eco88I CYCGRG 2 cut(s) 16, 249
EcoO109I RGGNCCY 3 cut(s) 502, 531, 532
EcoRII CCWGG 5 cut(s) 279, 434, 455, 550, 620
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 3 cut(s) 357, 512, 528
FaiI YATR 8 cut(s) 355, 483, 510, 526, 538, 617, 671, 970
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 353, 508, 524
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 6 cut(s) 147, 188, 191, 296, 420, 859
FokI GGATG 2 cut(s) 143, 533
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 6 cut(s) 147, 188, 191, 296, 420, 859
FspBI CTAG 1 cut(s) 53
FspI TGCGCA 1 cut(s) 923
GlaI GCGC 2 cut(s) 857, 923
GluI GCNGC 6 cut(s) 147, 188, 191, 296, 420, 859
GsuI CTGGAG 3 cut(s) 323, 418, 439
HaeIII GGCC 3 cut(s) 461, 533, 834
HapII CCGG 4 cut(s) 122, 137, 340, 835
HhaI GCGC 2 cut(s) 858, 924
Hin1II CATG 3 cut(s) 357, 512, 528
Hin6I GCGC 2 cut(s) 856, 922
HinP1I GCGC 2 cut(s) 856, 922
HincII GTYRAC 2 cut(s) 388, 745
HindII GTYRAC 2 cut(s) 388, 745
HindIII AAGCTT 2 cut(s) 214, 945
HinfI GANTC 5 cut(s) 92, 307, 464, 755, 848
HpaII CCGG 4 cut(s) 122, 137, 340, 835
HphI GGTGA 1 cut(s) 885
Hpy166II GTNNAC 3 cut(s) 388, 522, 745
Hpy188I TCNGA 2 cut(s) 312, 883
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 3 cut(s) 388, 522, 745
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4V TGCA 3 cut(s) 164, 197, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 724
HpyF3I CTNAG 3 cut(s) 232, 311, 952
Hsp92II CATG 3 cut(s) 357, 512, 528
HspAI GCGC 2 cut(s) 856, 922
KflI GGGWCCC 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
LmnI GCTCC 3 cut(s) 154, 345, 724
Lsp1109I GCAGC 4 cut(s) 133, 174, 307, 870
LweI GCATC 2 cut(s) 293, 874
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 3 cut(s) 29, 81, 907
MalI GATC 7 cut(s) 51, 75, 396, 407, 714, 792, 817
MboI GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
MboII GAAGA 4 cut(s) 268, 271, 698, 820
MflI RGATCY 2 cut(s) 49, 73
MhlI GDGCHC 3 cut(s) 535, 805, 829
MluCI AATT 2 cut(s) 330, 762
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 7 cut(s) 250, 258, 300, 360, 461, 742, 924
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 2 cut(s) 486, 513
MspCI CTTAAG 1 cut(s) 211
MspI CCGG 4 cut(s) 122, 137, 340, 835
MspR9I CCNGG 5 cut(s) 281, 436, 457, 552, 622
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 5 cut(s) 281, 436, 457, 552, 622
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 2 cut(s) 187, 724
NdeII GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
NlaIII CATG 3 cut(s) 357, 512, 528
NlaIV GGNNCC 5 cut(s) 503, 504, 532, 533, 802
NmeAIII GCCGAG 2 cut(s) 271, 487
NmuCI GTSAC 2 cut(s) 29, 81
NsbI TGCGCA 1 cut(s) 923
NspI RCATGY 1 cut(s) 528
PaeR7I CTCGAG 1 cut(s) 249
PaqCI CACCTGC 1 cut(s) 327
PciI ACATGT 1 cut(s) 524
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 4 cut(s) 92, 307, 755, 848
PfoI TCCNGGA 1 cut(s) 620
PinAI ACCGGT 1 cut(s) 121
PkrI GCNGC 6 cut(s) 148, 189, 192, 297, 421, 860
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 502
PscI ACATGT 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 5 cut(s) 279, 434, 455, 550, 620
PspGI CCWGG 5 cut(s) 279, 434, 455, 550, 620
PspN4I GGNNCC 5 cut(s) 503, 504, 532, 533, 802
PspOMI GGGCCC 1 cut(s) 531
PspPI GGNCC 4 cut(s) 459, 502, 531, 532
PspPPI RGGWCCY 1 cut(s) 502
PspXI VCTCGAGB 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 2 cut(s) 49, 73
RsaI GTAC 2 cut(s) 787, 967
RsaNI GTAC 2 cut(s) 786, 966
RseI CAYNNNNRTG 2 cut(s) 486, 513
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 6 cut(s) 147, 188, 191, 296, 420, 859
Sau3AI GATC 7 cut(s) 49, 73, 394, 405, 712, 790, 815
Sau96I GGNCC 4 cut(s) 459, 502, 531, 532
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 5 cut(s) 281, 436, 457, 552, 622
SduI GDGCHC 3 cut(s) 535, 805, 829
SetI ASST 8 cut(s) 218, 242, 321, 453, 591, 670, 729, 949
SfaNI GCATC 2 cut(s) 293, 874
SfcI CTRYAG 2 cut(s) 69, 442
Sfr274I CTCGAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 502
SlaI CTCGAG 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 486, 513
SmlI CTYRAG 2 cut(s) 211, 249
SmoI CTYRAG 2 cut(s) 211, 249
Sse9I AATT 2 cut(s) 330, 762
SsiI CCGC 4 cut(s) 179, 191, 343, 420
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 5 cut(s) 279, 434, 455, 550, 620
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 628
TaqI TCGA 2 cut(s) 250, 793
TasI AATT 2 cut(s) 330, 762
TatI WGTACW 1 cut(s) 965
TauI GCSGC 2 cut(s) 193, 422
TfiI GAWTC 4 cut(s) 92, 307, 755, 848
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 3 cut(s) 90, 579, 745
TseFI GTSAC 2 cut(s) 29, 81
TseI GCWGC 4 cut(s) 146, 187, 295, 858
Tsp45I GTSAC 2 cut(s) 29, 81
TspDTI ATGAA 1 cut(s) 615
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 3 cut(s) 90, 579, 745
Vha464I CTTAAG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 52
XceI RCATGY 1 cut(s) 528
XhoI CTCGAG 1 cut(s) 249
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.