Rh5CG171900

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007028
Physical Location & Seq
Reverse (-)
16151979 .. 16153013
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG171900.1

Sequence Viewer

Length: 1035 bp
ATGGGAGATCCAGTTTCAGACGAAATGCTCCATATCTTAAGCTATGGCATTCGAAACACAACGATGGAAAAGCAGATTTCTGTAGATCCAATATCATTGAATAGAGAATTTAGTGATAATCCAGTGCAGACTGTAGTTACTACTCCAAAGCCAAAAGGACCGAACCAACTGCCGCCCCTATTGCCTCCTACAAATTCCAAGTTTTTAAGCTTAAGTCTGCCAAATTCAGCCGCCTCATCACCACGATTTGGCGCCTCATTGTTGAAGAAGAAATGGAAGAATGAAAGGCAAGTATCTCCCCAGCAAGTTGAGGACGTGAACCACCTCCACTCTGCATCCTACAACCCGCTTCCTCTGCAACAAGAACAATTTCGACGGACCAAGTCGTGTGGTGAAGGAAGAGAATATGCTCCTGATGACTTTGATCTTTGGCTGATTCAACCAAATGCCATTGAAATTGTCAACAAAGCATATACCAATTACACTAGCTTCTCCAAAACTGAAATCAACAGAGCTGTGCATAAAAATGGCAAGAACAATGATCCAAGTGATGATATCGATGAGTTCAAATGTGGAGCTCTCTGCCTTTACCTTCCTGGCTTCGGCAGCAAGGCAAAGCCAGTGAGAGCAAGAAAGGGAGAATCCGAACTGCGAAATCGAAATGTCATCTCTAGATCAGTTTCCTTGGAAAAATTTGAGTGTGGTTCTTGGGCTTCTCAAGTTATGGTAAGTGGCAATTTAGAGGACTCCATGGGTCACTTTGATCTGCCACTGGAGTTGATAAGAGGCAATGTAAACGATGCACATTCACCAGTTACTACAGGTTTCCTCTTTGACAAGGATATAAAAGGAGTCCTGAAGAATGGCTCAGTCAGAACATCAGCAGCTAGAAAATCACATGAGTCGCCACGCCACGTTCGGTTTTCGACTTCATCTCCAAAGTCTTACCCTGCTTCACCGGGTTCTTGCATCACGCCTCGCTTGCGCAAAGCTAGAGAGGATTTCAATGCCTTCTTAGAAGCACAGAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.23

Weight (kDa)

9.07

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 986
AccB1I GGYRCC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 3 cut(s) 173, 231, 347
AclWI GGATC 3 cut(s) 2, 80, 536
AcsI RAATTY 4 cut(s) 107, 193, 223, 692
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 1028
AfiI CCNNNNNNNGG 2 cut(s) 248, 602
AflII CTTAAG 2 cut(s) 37, 211
AgsI TTSAA 6 cut(s) 100, 265, 440, 455, 568, 1006
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 7 cut(s) 42, 210, 489, 515, 578, 887, 992
AluI AGCT 7 cut(s) 42, 210, 489, 515, 578, 887, 992
Alw21I GWGCWC 1 cut(s) 580
AlwI GGATC 3 cut(s) 2, 80, 536
ApeKI GCWGC 2 cut(s) 606, 884
ApoI RAATTY 4 cut(s) 107, 193, 223, 692
Asp700I GAANNNNTTC 1 cut(s) 369
AspLEI GCGC 2 cut(s) 254, 987
AspS9I GGNCC 2 cut(s) 158, 378
AsuC2I CCSGG 1 cut(s) 960
AsuHPI GGTGA 4 cut(s) 231, 404, 801, 948
AsuII TTCGAA 1 cut(s) 52
AvaII GGWCC 2 cut(s) 158, 378
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 580
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 618, 896
BccI CCATC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 597
BcnI CCSGG 1 cut(s) 960
BfaI CTAG 4 cut(s) 486, 672, 888, 993
BfmI CTRYAG 3 cut(s) 81, 132, 819
BfoI RGCGCY 1 cut(s) 255
BfrI CTTAAG 2 cut(s) 37, 211
BisI GCNGC 4 cut(s) 173, 231, 607, 885
BlsI GCNGC 4 cut(s) 174, 232, 608, 886
Bme1390I CCNGG 2 cut(s) 597, 960
Bme18I GGWCC 2 cut(s) 158, 378
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 158, 378
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 597, 960
BmsI GCATC 3 cut(s) 344, 790, 978
BpmI CTGGAG 1 cut(s) 794
Bpu14I TTCGAA 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 960
Bsa29I ATCGAT 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 684, 750
BsaXI ACNNNNNCTCC 3 cut(s) 27, 919, 949
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 602
Bse1I ACTGG 5 cut(s) 11, 122, 620, 777, 812
Bse3DI GCAATG 1 cut(s) 796
BseBI CCWGG 1 cut(s) 597
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 684, 750
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 2 cut(s) 248, 602
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 5 cut(s) 11, 122, 620, 777, 812
BseXI GCAGC 2 cut(s) 618, 896
BseYI CCCAGC 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 1 cut(s) 959
BslI CCNNNNNNNGG 2 cut(s) 248, 602
BsmI GAATGC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 6 cut(s) 7, 85, 424, 541, 674, 763
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 3 cut(s) 173, 231, 347
BspCNI CTCAG 1 cut(s) 881
BspDI ATCGAT 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 3 cut(s) 2, 80, 536
BspT104I TTCGAA 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 2 cut(s) 37, 211
BsrDI GCAATG 1 cut(s) 796
BsrI ACTGG 5 cut(s) 11, 122, 620, 777, 812
BssECI CCNNGG 2 cut(s) 684, 750
BssMI GATC 6 cut(s) 7, 85, 424, 541, 674, 763
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 684, 750
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 252
BstAFI CTTAAG 2 cut(s) 37, 211
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstBI TTCGAA 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 983
BstDEI CTNAG 2 cut(s) 868, 1015
BstDSI CCRYGG 1 cut(s) 750
BstF5I GGATG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 2 cut(s) 254, 987
BstKTI GATC 6 cut(s) 10, 88, 427, 544, 677, 766
BstMBI GATC 6 cut(s) 7, 85, 424, 541, 674, 763
BstMWI GCNNNNNNNGC 5 cut(s) 181, 355, 606, 982, 1028
BstNI CCWGG 1 cut(s) 597
BstSCI CCNGG 2 cut(s) 595, 958
BstSFI CTRYAG 3 cut(s) 81, 132, 819
BstV1I GCAGC 2 cut(s) 618, 896
BstX2I RGATCY 2 cut(s) 7, 85
BstYI RGATCY 2 cut(s) 7, 85
Bsu15I ATCGAT 1 cut(s) 558
BsuTUI ATCGAT 1 cut(s) 558
BtgI CCRYGG 1 cut(s) 750
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 3 cut(s) 129, 627, 770
Cac8I GCNNGC 1 cut(s) 983
CfoI GCGC 2 cut(s) 254, 987
Cfr13I GGNCC 2 cut(s) 158, 378
ClaI ATCGAT 1 cut(s) 558
CspCI CAANNNNNGTGG 4 cut(s) 370, 405, 759, 794
CviAII CATG 3 cut(s) 751, 899, 1032
DdeI CTNAG 2 cut(s) 868, 1015
DinI GGCGCC 1 cut(s) 253
DpnI GATC 6 cut(s) 9, 87, 426, 543, 676, 765
DpnII GATC 6 cut(s) 7, 85, 424, 541, 674, 763
DraIII CACNNNGTG 1 cut(s) 1028
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Ecl136II GAGCTC 1 cut(s) 578
Eco130I CCWWGG 2 cut(s) 684, 750
Eco24I GRGCYC 1 cut(s) 580
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 158, 378
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 878
EcoICRI GAGCTC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 2 cut(s) 684, 750
EcoT38I GRGCYC 1 cut(s) 580
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
ErhI CCWWGG 2 cut(s) 684, 750
FaeI CATG 3 cut(s) 754, 902, 1035
FatI CATG 3 cut(s) 750, 898, 1031
FauI CCCGC 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 173, 231, 607, 885
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 4 cut(s) 173, 231, 607, 885
FspBI CTAG 4 cut(s) 486, 672, 888, 993
FspI TGCGCA 1 cut(s) 986
GlaI GCGC 2 cut(s) 253, 986
GluI GCNGC 4 cut(s) 173, 231, 607, 885
GsaI CCCAGC 1 cut(s) 304
GsuI CTGGAG 1 cut(s) 794
HaeII RGCGCY 1 cut(s) 255
HapII CCGG 1 cut(s) 959
HhaI GCGC 2 cut(s) 254, 987
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 3 cut(s) 754, 902, 1035
Hin6I GCGC 2 cut(s) 252, 985
HinP1I GCGC 2 cut(s) 252, 985
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 5 cut(s) 436, 641, 746, 852, 902
HpaII CCGG 1 cut(s) 959
HphI GGTGA 4 cut(s) 231, 404, 801, 948
Hpy166II GTNNAC 3 cut(s) 319, 463, 796
Hpy188I TCNGA 3 cut(s) 19, 646, 875
Hpy188III TCNNGA 3 cut(s) 413, 672, 856
Hpy8I GTNNAC 3 cut(s) 319, 463, 796
Hpy99I CGWCG 1 cut(s) 378
HpyAV CCTTC 3 cut(s) 389, 602, 1021
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 2 cut(s) 315, 915
HpyCH4V TGCA 7 cut(s) 127, 335, 358, 520, 803, 969, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 355, 606, 982, 1028
HpyF3I CTNAG 2 cut(s) 868, 1015
HpySE526I ACGT 2 cut(s) 315, 915
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 3 cut(s) 754, 902, 1035
HspAI GCGC 2 cut(s) 252, 985
KasI GGCGCC 1 cut(s) 251
Kzo9I GATC 6 cut(s) 7, 85, 424, 541, 674, 763
LmnI GCTCC 3 cut(s) 33, 415, 575
Lsp1109I GCAGC 2 cut(s) 618, 896
LweI GCATC 3 cut(s) 344, 790, 978
MaeI CTAG 4 cut(s) 486, 672, 888, 993
MaeII ACGT 2 cut(s) 315, 915
MaeIII GTNAC 3 cut(s) 136, 755, 814
MalI GATC 6 cut(s) 9, 87, 426, 543, 676, 765
MboI GATC 6 cut(s) 7, 85, 424, 541, 674, 763
MboII GAAGA 5 cut(s) 277, 280, 289, 411, 871
MflI RGATCY 2 cut(s) 7, 85
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 8 cut(s) 107, 193, 223, 368, 456, 478, 692, 736
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 3 cut(s) 740, 861, 911
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 3 cut(s) 38, 206, 212
MslI CAYNNNNRTG 2 cut(s) 62, 525
MspCI CTTAAG 2 cut(s) 37, 211
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 2 cut(s) 597, 960
Mva1269I GAATGC 1 cut(s) 48
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 5 cut(s) 181, 355, 606, 982, 1028
NarI GGCGCC 1 cut(s) 252
NciI CCSGG 1 cut(s) 960
NcoI CCATGG 1 cut(s) 750
NdeII GATC 6 cut(s) 7, 85, 424, 541, 674, 763
NlaIII CATG 3 cut(s) 754, 902, 1035
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 755
NsbI TGCGCA 1 cut(s) 986
NspV TTCGAA 1 cut(s) 52
PctI GAATGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 2 cut(s) 436, 641
PflFI GACNNNGTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 4 cut(s) 174, 232, 608, 886
PleI GAGTC 3 cut(s) 740, 860, 910
PluTI GGCGCC 1 cut(s) 255
PpsI GAGTC 3 cut(s) 740, 860, 910
Psp124BI GAGCTC 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 595
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 158, 378
PsuI RGATCY 2 cut(s) 7, 85
PsyI GACNNNGTC 1 cut(s) 382
RseI CAYNNNNRTG 2 cut(s) 62, 525
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 3 cut(s) 38, 206, 212
SatI GCNGC 4 cut(s) 173, 231, 607, 885
Sau3AI GATC 6 cut(s) 7, 85, 424, 541, 674, 763
Sau96I GGNCC 2 cut(s) 158, 378
SchI GAGTC 3 cut(s) 740, 861, 911
ScrFI CCNGG 2 cut(s) 597, 960
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 3 cut(s) 344, 790, 978
SfcI CTRYAG 3 cut(s) 81, 132, 819
SfoI GGCGCC 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 52
SinI GGWCC 2 cut(s) 158, 378
SmiMI CAYNNNNRTG 2 cut(s) 62, 525
SmlI CTYRAG 3 cut(s) 37, 211, 717
SmoI CTYRAG 3 cut(s) 37, 211, 717
Sse9I AATT 8 cut(s) 107, 193, 223, 368, 456, 478, 692, 736
SsiI CCGC 3 cut(s) 173, 231, 347
SspDI GGCGCC 1 cut(s) 251
SspMI CTAG 4 cut(s) 486, 672, 888, 993
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 2 cut(s) 595, 958
StyI CCWWGG 2 cut(s) 684, 750
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 2 cut(s) 318, 918
TaqI TCGA 5 cut(s) 52, 373, 558, 658, 926
TaqII GACCGA 1 cut(s) 175
TasI AATT 8 cut(s) 107, 193, 223, 368, 456, 478, 692, 736
TauI GCSGC 2 cut(s) 175, 233
TfiI GAWTC 2 cut(s) 436, 641
Tru1I TTAA 3 cut(s) 38, 206, 212
Tru9I TTAA 3 cut(s) 38, 206, 212
TscAI CASTG 3 cut(s) 129, 627, 777
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 2 cut(s) 606, 884
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 2 cut(s) 297, 921
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 3 cut(s) 129, 627, 777
Tth111I GACNNNGTC 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 248
Vha464I CTTAAG 2 cut(s) 37, 211
VpaK11BI GGWCC 2 cut(s) 158, 378
XapI RAATTY 4 cut(s) 107, 193, 223, 692
XbaI TCTAGA 1 cut(s) 671
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 4 cut(s) 486, 672, 888, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.