Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Reverse (-)

16073866 .. 16077501

Gene Structure 3636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATGATGACGAGTTCGCAAATGCTCCAGGTGGCGCCACTCGCATCACACGCTTCCTCCTCCTCATCTTCTTCTTCGTCCCAAACCCTCCCAGTCTGGTTCAACCATTGCCATTGCCACCCTTTACGGCCTCAGCTCACTCTCCGCCACCGCCCAAGGCCCACAATACTACTCGCCGGAAACCCAGATAGGAAGTTGCAAGTTTCATCGTCTTCGTCGTCATCTTGGACTACCCAACAAGACCAGGACGATGAAGAAGAAGAAGATGAAGACGATGACCAAGAAGAAGAAGAAGAAAGTGACCCTACTCCTCACGACCTCGAATACATCAGCCAAATCAAAAGGGTGTTGGAGCTTCTTAAGAAGAACAGAGACATGATTTTCAATGAGGTTAAGCTTACCATAGCGATTGAGGACATAAGAGAAGTTGAGCGGAGGAGACTCCTTGGCATTGAGGATCCCGATGCTCCGACCAGAGAAGAGTTGGCTGCTGTTCTTGAAGAAGTGAATGAGGGAAAAATCCCCAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.21

Weight (kDa)

4.66

Isoelectric Point (pI)

80.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	433
AciI	CCGC	3 cut(s)	145, 151, 433
AclWI	GGATC	2 cut(s)	452, 465
AcyI	GRCGYC	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	103, 385, 500
AjnI	CCWGG	2 cut(s)	27, 243
AluBI	AGCT	3 cut(s)	136, 355, 397
AluI	AGCT	3 cut(s)	136, 355, 397
Alw26I	GTCTC	2 cut(s)	366, 433
AlwI	GGATC	2 cut(s)	452, 465
AoxI	GGCC	2 cut(s)	128, 158
ApeKI	GCWGC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	204, 276
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	475
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	29, 245
BcoDI	GTCTC	2 cut(s)	366, 433
BfoI	RGCGCY	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	29, 245
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	36, 459
BmrFI	CCNGG	2 cut(s)	29, 245
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	2 cut(s)	53, 454
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	2 cut(s)	204, 276
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	155, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	2 cut(s)	106, 112
BseBI	CCWGG	2 cut(s)	29, 245
BseDI	CCNNGG	2 cut(s)	155, 445
BseMI	GCAATG	2 cut(s)	106, 112
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	4 cut(s)	49, 52, 300, 451
BseXI	GCAGC	1 cut(s)	475
BshFI	GGCC	2 cut(s)	130, 160
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	366, 433
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	130, 160
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	3 cut(s)	145, 151, 433
BspANI	GGCC	2 cut(s)	130, 160
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	36, 459
BspPI	GGATC	2 cut(s)	452, 465
BspT107I	GGYRCC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	433
BsrDI	GCAATG	2 cut(s)	106, 112
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	155, 445
BssMI	GATC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	155, 445
Bst2UI	CCWGG	2 cut(s)	29, 245
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	366, 433
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	2 cut(s)	29, 245
BstSCI	CCNGG	2 cut(s)	27, 243
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	2 cut(s)	204, 276
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	130, 160
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	159
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	7 cut(s)	130, 136, 160, 333, 355, 397, 488
CviKI_1	RGCY	7 cut(s)	130, 136, 160, 333, 355, 397, 488
DdeI	CTNAG	1 cut(s)	132
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	155, 445
EcoRII	CCWGG	2 cut(s)	27, 243
EcoT14I	CCWWGG	2 cut(s)	155, 445
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	155, 445
FaeI	CATG	1 cut(s)	379
FaiI	YATR	3 cut(s)	377, 404, 419
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	489
Fsp4HI	GCNGC	1 cut(s)	489
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	130, 160
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	3 cut(s)	314, 461, 497
Hpy99I	CGWCG	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	3 cut(s)	30, 352, 472
LpnPI	CCDG	9 cut(s)	14, 41, 82, 105, 190, 198, 230, 257, 487
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	2 cut(s)	53, 454
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	459
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	1 cut(s)	457
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	1 cut(s)	529
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	2 cut(s)	330, 494
MseI	TTAA	2 cut(s)	360, 393
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	29, 245
MvaI	CCWGG	2 cut(s)	29, 245
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	36, 459
NmuCI	GTSAC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	490
PleI	GAGTC	1 cut(s)	435
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	27, 243
PspGI	CCWGG	2 cut(s)	27, 243
PspN4I	GGNNCC	2 cut(s)	36, 459
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	360, 393
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	2 cut(s)	29, 245
SetI	ASST	6 cut(s)	33, 138, 321, 357, 393, 399
SfaNI	GCATC	2 cut(s)	53, 454
SfoI	GGCGCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	529
SsiI	CCGC	3 cut(s)	145, 151, 433
SspDI	GGCGCC	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	27, 243
StyI	CCWWGG	2 cut(s)	155, 445
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	360, 393
Tru9I	TTAA	2 cut(s)	360, 393
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	3 cut(s)	195, 267, 282
Vha464I	CTTAAG	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.