Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Reverse (-)

17142267 .. 17144881

Gene Structure 2615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCTCCAGGTGGCGCCACTCGCATCACACGCTTCCTCCTCATCTTCTTCTTCGTCCCAAACCCTCCCAGTCTGGTTCAACCATTGCCATTGCCACCCTTTACGGCCTCAGCTCACTCTCCGCCACCGCCCAAGGCCCACAATACTACTCGCCGGAAACCCAGATAGGTTGCAAGTTTCATCGTCTTCGTCGTCATCTTGGACTACCCAACAAGACCAGGACGATGAAGAAGAAGATGAAGACGATGACCAAGAAGAAGAAGAAGAAAGTGACCCTACCCCTGACGACCTCGAATACATCAGCCAAATCAAAAGGGTGTTGGAGCTTCTTAAGAAGAACAGAGACATGATTTTCAATGAGGTTAAGCTTACTGTTGCGATTGAGGACATAAGAGAAGTTGAGCGGAGGAGACTCCTTGGCATTGAGGATCCCGATGCTCCGACCAGAGAAGAGTTGGCTGCTGTTCTTGAAGAAGTGCATGAGGGGAAAATCCCCAAAAATCGACTTGCTCTTAAACTGCTAGCTGAGGAAATGAATCGTTGGCCCAATCTTGAGGTTCAGATTAAACCAGCAAAGAAAAAGCCAGGAAAATCACTATATGCAAGAGTCACAGACACTGGTATTGATCTTAAAGAGGCTGCTAAGAGACTGAACATTGATTGGGATACAGCTGCAGAGATTGACGATGCTGATGTTAAGGATGAGTCAGATGTGCCTTCAGTTGTGGGCTACGGAGCGCTGTACTTAGTCACGCTTTTTCCAGTCATTATCGGTGTGTCAGTGGTATTAATTTTATTTTACAATTCACTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.6

Weight (kDa)

4.69

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AccBSI	CCGCTC	1 cut(s)	403
AciI	CCGC	3 cut(s)	121, 127, 403
AclWI	GGATC	2 cut(s)	422, 435
AcuI	CTGAAG	1 cut(s)	702
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	743
AfeI	AGCGCT	1 cut(s)	738
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	79, 355, 470
AjnI	CCWGG	3 cut(s)	6, 216, 583
AluBI	AGCT	5 cut(s)	112, 325, 367, 524, 671
AluI	AGCT	5 cut(s)	112, 325, 367, 524, 671
Alw26I	GTCTC	3 cut(s)	336, 403, 640
AlwI	GGATC	2 cut(s)	422, 435
AlwNI	CAGNNNCTG	1 cut(s)	617
Aor51HI	AGCGCT	1 cut(s)	738
AoxI	GGCC	3 cut(s)	104, 134, 542
ApeKI	GCWGC	3 cut(s)	458, 638, 671
AseI	ATTAAT	1 cut(s)	788
AspLEI	GCGC	2 cut(s)	16, 739
AspS9I	GGNCC	2 cut(s)	135, 543
AsuNHI	GCTAGC	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	177, 246
BbvCI	CCTCAGC	2 cut(s)	108, 525
BbvI	GCAGC	3 cut(s)	445, 625, 658
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	8, 218, 585
BciVI	GTATCC	1 cut(s)	658
BcoDI	GTCTC	3 cut(s)	336, 403, 640
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	2 cut(s)	17, 740
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	658
BisI	GCNGC	3 cut(s)	459, 639, 672
BlsI	GCNGC	3 cut(s)	460, 640, 673
Bme1390I	CCNGG	3 cut(s)	8, 218, 585
BmgT120I	GGNCC	2 cut(s)	135, 543
BmiI	GGNNCC	2 cut(s)	15, 429
BmrFI	CCNGG	3 cut(s)	8, 218, 585
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	32, 424, 676
BmtI	GCTAGC	1 cut(s)	524
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	2 cut(s)	177, 246
BpmI	CTGGAG	1 cut(s)	794
Bpu10I	CCTNAGC	2 cut(s)	108, 525
BpuEI	CTTGAG	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	131, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse1I	ACTGG	4 cut(s)	68, 622, 761, 811
Bse3DI	GCAATG	2 cut(s)	82, 88
BseBI	CCWGG	3 cut(s)	8, 218, 585
BseDI	CCNNGG	2 cut(s)	131, 415
BseGI	GGATG	1 cut(s)	706
BseMI	GCAATG	2 cut(s)	82, 88
BseMII	CTCAG	2 cut(s)	122, 516
BseNI	ACTGG	4 cut(s)	68, 622, 761, 811
BseRI	GAGGAG	2 cut(s)	28, 421
BseXI	GCAGC	3 cut(s)	445, 625, 658
BshFI	GGCC	3 cut(s)	106, 136, 544
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	40
BsmAI	GTCTC	3 cut(s)	336, 403, 640
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	106, 136, 544
Bsp143I	GATC	2 cut(s)	427, 625
BspACI	CCGC	3 cut(s)	121, 127, 403
BspANI	GGCC	3 cut(s)	106, 136, 544
BspCNI	CTCAG	2 cut(s)	121, 517
BspLI	GGNNCC	2 cut(s)	15, 429
BspMAI	CTGCAG	1 cut(s)	676
BspOI	GCTAGC	1 cut(s)	524
BspPI	GGATC	2 cut(s)	422, 435
BspT107I	GGYRCC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	82, 88
BsrI	ACTGG	4 cut(s)	68, 622, 761, 811
BssECI	CCNNGG	2 cut(s)	131, 415
BssMI	GATC	2 cut(s)	427, 625
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	131, 415
Bst2UI	CCWGG	3 cut(s)	8, 218, 585
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	444
BstACI	GRCGYC	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	4 cut(s)	108, 525, 642, 745
BstF5I	GGATG	1 cut(s)	706
BstH2I	RGCGCY	2 cut(s)	17, 740
BstHHI	GCGC	2 cut(s)	16, 739
BstKTI	GATC	2 cut(s)	430, 628
BstMAI	GTCTC	3 cut(s)	336, 403, 640
BstMBI	GATC	2 cut(s)	427, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 29
BstNI	CCWGG	3 cut(s)	8, 218, 585
BstSCI	CCNGG	3 cut(s)	6, 216, 583
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	445, 625, 658
BstV2I	GAAGAC	2 cut(s)	177, 246
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	3 cut(s)	106, 136, 544
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	615, 786
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	2 cut(s)	16, 739
Cfr13I	GGNCC	2 cut(s)	135, 543
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	2 cut(s)	346, 479
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	4 cut(s)	108, 525, 642, 745
DinI	GGCGCC	1 cut(s)	15
DpnI	GATC	2 cut(s)	429, 627
DpnII	GATC	2 cut(s)	427, 625
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	2 cut(s)	131, 415
Eco47III	AGCGCT	1 cut(s)	738
Eco57I	CTGAAG	1 cut(s)	702
EcoRII	CCWGG	3 cut(s)	6, 216, 583
EcoT14I	CCWWGG	2 cut(s)	131, 415
EgeI	GGCGCC	1 cut(s)	15
EheI	GGCGCC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	131, 415
FaeI	CATG	2 cut(s)	349, 482
FaiI	YATR	5 cut(s)	347, 389, 480, 598, 600
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	345, 478
Fnu4HI	GCNGC	3 cut(s)	459, 639, 672
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	3 cut(s)	459, 639, 672
FspBI	CTAG	1 cut(s)	521
GlaI	GCGC	2 cut(s)	15, 738
GluI	GCNGC	3 cut(s)	459, 639, 672
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	2 cut(s)	17, 740
HaeIII	GGCC	3 cut(s)	106, 136, 544
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	2 cut(s)	16, 739
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	349, 482
Hin6I	GCGC	2 cut(s)	14, 737
HinP1I	GCGC	2 cut(s)	14, 737
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	4 cut(s)	411, 535, 606, 704
HpaII	CCGG	1 cut(s)	153
Hpy188I	TCNGA	3 cut(s)	441, 561, 709
Hpy188III	TCNNGA	3 cut(s)	431, 467, 551
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	726
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	172, 478, 602, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 29
HpyF3I	CTNAG	4 cut(s)	108, 525, 642, 745
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	349, 482
HspAI	GCGC	2 cut(s)	14, 737
KasI	GGCGCC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	427, 625
LmnI	GCTCC	4 cut(s)	9, 322, 442, 734
Lsp1109I	GCAGC	3 cut(s)	445, 625, 658
LweI	GCATC	3 cut(s)	32, 424, 676
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	3 cut(s)	269, 607, 748
MalI	GATC	2 cut(s)	429, 627
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	2 cut(s)	427, 625
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	2 cut(s)	789, 802
Mly113I	GGCGCC	1 cut(s)	14
MlyI	GAGTC	3 cut(s)	405, 615, 713
MmeI	TCCRAC	2 cut(s)	300, 464
MseI	TTAA	7 cut(s)	330, 363, 513, 564, 630, 696, 788
MspA1I	CMGCKG	1 cut(s)	671
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	3 cut(s)	8, 218, 585
MvaI	CCWGG	3 cut(s)	8, 218, 585
MwoI	GCNNNNNNNGC	2 cut(s)	20, 29
NarI	GGCGCC	1 cut(s)	14
NdeII	GATC	2 cut(s)	427, 625
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	2 cut(s)	349, 482
NlaIV	GGNNCC	2 cut(s)	15, 429
NmuCI	GTSAC	3 cut(s)	269, 607, 748
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	460, 640, 673
PleI	GAGTC	3 cut(s)	405, 614, 712
PluTI	GGCGCC	1 cut(s)	17
PpsI	GAGTC	3 cut(s)	405, 614, 712
PshBI	ATTAAT	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	6, 216, 583
PspGI	CCWGG	3 cut(s)	6, 216, 583
PspN4I	GGNNCC	2 cut(s)	15, 429
PspPI	GGNCC	2 cut(s)	135, 543
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
SaqAI	TTAA	7 cut(s)	330, 363, 513, 564, 630, 696, 788
SatI	GCNGC	3 cut(s)	459, 639, 672
Sau3AI	GATC	2 cut(s)	427, 625
Sau96I	GGNCC	2 cut(s)	135, 543
SchI	GAGTC	3 cut(s)	405, 615, 713
ScrFI	CCNGG	3 cut(s)	8, 218, 585
SfaNI	GCATC	3 cut(s)	32, 424, 676
SfcI	CTRYAG	1 cut(s)	672
SfoI	GGCGCC	1 cut(s)	15
SmlI	CTYRAG	2 cut(s)	329, 551
SmoI	CTYRAG	2 cut(s)	329, 551
Sse9I	AATT	2 cut(s)	789, 802
SsiI	CCGC	3 cut(s)	121, 127, 403
SspDI	GGCGCC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	3 cut(s)	6, 216, 583
StyI	CCWWGG	2 cut(s)	131, 415
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	291, 502
TasI	AATT	2 cut(s)	789, 802
TatI	WGTACW	1 cut(s)	741
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	7 cut(s)	330, 363, 513, 564, 630, 696, 788
Tru9I	TTAA	7 cut(s)	330, 363, 513, 564, 630, 696, 788
TscAI	CASTG	2 cut(s)	622, 786
TseFI	GTSAC	3 cut(s)	269, 607, 748
TseI	GCWGC	3 cut(s)	458, 638, 671
Tsp45I	GTSAC	3 cut(s)	269, 607, 748
TspDTI	ATGAA	4 cut(s)	168, 240, 252, 548
TspGWI	ACGGA	1 cut(s)	747
TspRI	CASTG	2 cut(s)	622, 786
Vha464I	CTTAAG	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.