Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGATGATGACGAGTTCGCAAATGCTCCAGGTGGCGCCACTCGCATCACACGCTTCCTCCTCCTCATCTTCTTCTTCGTCCCAAACCCTCCCAGTCTGGTTCAACCATTGCCATTGCCACCCTTTACGGCCTCAGCTCACTCTCCGCCACCGCCCAAGGCCCACAATACTACTCGCCGGAAACCCAGATACGAAGTTGCAGGTTTCATCGTCTTCGTCGTCATCTTGGACTACCCAACAAGACCAGGACGATGAAGAAGAAGAAGATGAAGTCGATGACCAAGAAGAAGAAGAAGAAAGTGACCCTACTCCTGACGACCTCGAATACATCAGCCAAATCAAAAGGGTGTTGGAGCTTCTTAAGAAGAACAGAGACATGATTTTCAATGAGGTTAAGCTTACTATTGCGATTGAGGACATAAGAGAAGTTGAGCGGAGGAGACTCCTTGGCATTGAGGATCCTGATGCTCCGACCAGGGAGGAGTTGGCTGCTGTTCTTGAAGAAGTGCATGAGGGAAAAATCCCCAAAAATCGACTTGCACTTAAACTGCTGGCTGAGGAAATGAGTCGATGGCCCAATCTAGAGGTTCAGATTAAACCAGCAAAGAAAAAGCCAGGAAAATCACTGTATGCAAGGGTCACAGACACCGGTATTGATCTGAAAGAGGCTGCTAAGAGACTGAACATTGATTGGGATACAGCTGCAGAGATTGACGATGCTGATGTTAAGGATGAGTCAGATGTGCCTTCAGTTGTGCTAATCCTTGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.99

Weight (kDa)

4.7

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	433
AciI	CCGC	3 cut(s)	145, 151, 433
AclWI	GGATC	2 cut(s)	452, 465
AcuI	CTGAAG	1 cut(s)	732
AcyI	GRCGYC	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	359
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	3 cut(s)	103, 385, 500
AjnI	CCWGG	4 cut(s)	27, 243, 473, 613
AluBI	AGCT	4 cut(s)	136, 355, 397, 701
AluI	AGCT	4 cut(s)	136, 355, 397, 701
Alw26I	GTCTC	3 cut(s)	366, 433, 670
AlwI	GGATC	2 cut(s)	452, 465
AoxI	GGCC	3 cut(s)	128, 158, 572
ApeKI	GCWGC	3 cut(s)	488, 668, 701
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	159, 573
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	2 cut(s)	132, 555
BbvI	GCAGC	3 cut(s)	475, 655, 688
BccI	CCATC	1 cut(s)	564
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	4 cut(s)	29, 245, 475, 615
BciVI	GTATCC	1 cut(s)	688
BcoDI	GTCTC	3 cut(s)	366, 433, 670
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	3 cut(s)	489, 669, 702
BlsI	GCNGC	3 cut(s)	490, 670, 703
Bme1390I	CCNGG	4 cut(s)	29, 245, 475, 615
BmgT120I	GGNCC	2 cut(s)	159, 573
BmiI	GGNNCC	2 cut(s)	36, 459
BmrFI	CCNGG	4 cut(s)	29, 245, 475, 615
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	3 cut(s)	53, 454, 706
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	2 cut(s)	132, 555
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	4 cut(s)	155, 445, 474, 763
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	2 cut(s)	106, 112
BseBI	CCWGG	4 cut(s)	29, 245, 475, 615
BseDI	CCNNGG	4 cut(s)	155, 445, 474, 763
BseGI	GGATG	1 cut(s)	736
BseMI	GCAATG	2 cut(s)	106, 112
BseMII	CTCAG	2 cut(s)	146, 546
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	4 cut(s)	49, 52, 451, 494
BseXI	GCAGC	3 cut(s)	475, 655, 688
BshFI	GGCC	3 cut(s)	130, 160, 574
BshNI	GGYRCC	1 cut(s)	34
BshTI	ACCGGT	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	177, 648
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	366, 433, 670
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	130, 160, 574
Bsp143I	GATC	2 cut(s)	457, 655
BspACI	CCGC	3 cut(s)	145, 151, 433
BspANI	GGCC	3 cut(s)	130, 160, 574
BspCNI	CTCAG	2 cut(s)	145, 547
BspLI	GGNNCC	2 cut(s)	36, 459
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	452, 465
BspT107I	GGYRCC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	433
BsrDI	GCAATG	2 cut(s)	106, 112
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	4 cut(s)	155, 445, 474, 763
BssMI	GATC	2 cut(s)	457, 655
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	3 cut(s)	155, 445, 763
Bst2UI	CCWGG	4 cut(s)	29, 245, 475, 615
Bst4CI	ACNGT	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	132, 555, 672
BstF5I	GGATG	1 cut(s)	736
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	460, 658
BstMAI	GTCTC	3 cut(s)	366, 433, 670
BstMBI	GATC	2 cut(s)	457, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	4 cut(s)	29, 245, 475, 615
BstSCI	CCNGG	4 cut(s)	27, 243, 473, 613
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	3 cut(s)	475, 655, 688
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	130, 160, 574
BtsCI	GGATG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	623
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	2 cut(s)	159, 573
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	2 cut(s)	376, 509
DdeI	CTNAG	3 cut(s)	132, 555, 672
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	2 cut(s)	459, 657
DpnII	GATC	2 cut(s)	457, 655
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	3 cut(s)	155, 445, 763
Eco57I	CTGAAG	1 cut(s)	732
EcoRII	CCWGG	4 cut(s)	27, 243, 473, 613
EcoT14I	CCWWGG	3 cut(s)	155, 445, 763
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	3 cut(s)	155, 445, 763
FaeI	CATG	2 cut(s)	379, 512
FaiI	YATR	4 cut(s)	377, 419, 510, 630
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	375, 508
Fnu4HI	GCNGC	3 cut(s)	489, 669, 702
FokI	GGATG	1 cut(s)	743
Fsp4HI	GCNGC	3 cut(s)	489, 669, 702
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	489, 669, 702
GsuI	CTGGAG	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	130, 160, 574
HapII	CCGG	2 cut(s)	177, 648
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	379, 512
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	3 cut(s)	441, 565, 734
HpaII	CCGG	2 cut(s)	177, 648
Hpy188I	TCNGA	4 cut(s)	471, 591, 660, 739
Hpy188III	TCNNGA	4 cut(s)	311, 461, 497, 581
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	756
HpyCH4III	ACNGT	1 cut(s)	627
HpyCH4V	TGCA	5 cut(s)	199, 508, 539, 632, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	3 cut(s)	132, 555, 672
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	379, 512
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	457, 655
LmnI	GCTCC	3 cut(s)	30, 352, 472
Lsp1109I	GCAGC	3 cut(s)	475, 655, 688
LweI	GCATC	3 cut(s)	53, 454, 706
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	299, 637
MalI	GATC	2 cut(s)	459, 657
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	2 cut(s)	457, 655
MflI	RGATCY	1 cut(s)	457
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	435, 574, 743
MmeI	TCCRAC	2 cut(s)	330, 494
MseI	TTAA	6 cut(s)	360, 393, 543, 594, 726, 772
MspA1I	CMGCKG	1 cut(s)	701
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	2 cut(s)	177, 648
MspR9I	CCNGG	4 cut(s)	29, 245, 475, 615
MvaI	CCWGG	4 cut(s)	29, 245, 475, 615
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	2 cut(s)	457, 655
NlaIII	CATG	2 cut(s)	379, 512
NlaIV	GGNNCC	2 cut(s)	36, 459
NmuCI	GTSAC	2 cut(s)	299, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	490, 670, 703
PleI	GAGTC	3 cut(s)	435, 573, 742
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	3 cut(s)	435, 573, 742
Psp6I	CCWGG	4 cut(s)	27, 243, 473, 613
PspGI	CCWGG	4 cut(s)	27, 243, 473, 613
PspN4I	GGNNCC	2 cut(s)	36, 459
PspPI	GGNCC	2 cut(s)	159, 573
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	701
SaqAI	TTAA	6 cut(s)	360, 393, 543, 594, 726, 772
SatI	GCNGC	3 cut(s)	489, 669, 702
Sau3AI	GATC	2 cut(s)	457, 655
Sau96I	GGNCC	2 cut(s)	159, 573
SchI	GAGTC	3 cut(s)	435, 574, 743
ScrFI	CCNGG	4 cut(s)	29, 245, 475, 615
SetI	ASST	9 cut(s)	33, 138, 204, 321, 357, 393, 399, 588, 703
SfaNI	GCATC	3 cut(s)	53, 454, 706
SfcI	CTRYAG	1 cut(s)	702
SfoI	GGCGCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SsiI	CCGC	3 cut(s)	145, 151, 433
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	27, 243, 473, 613
StyI	CCWWGG	3 cut(s)	155, 445, 763
TaaI	ACNGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	273, 321, 532, 568
Tru1I	TTAA	6 cut(s)	360, 393, 543, 594, 726, 772
Tru9I	TTAA	6 cut(s)	360, 393, 543, 594, 726, 772
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	2 cut(s)	299, 637
TseI	GCWGC	3 cut(s)	488, 668, 701
Tsp45I	GTSAC	2 cut(s)	299, 637
TspDTI	ATGAA	3 cut(s)	195, 267, 282
TspRI	CASTG	1 cut(s)	630
Vha464I	CTTAAG	1 cut(s)	359
XbaI	TCTAGA	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.