Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007239.1

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Forward (+)

64049 .. 66640

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007239.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atgaatcgatggcccaatctagaggttcagattaaaccagcaaagaaaaagccaggaaaatcactatatgcaagagtcacagacaccggtattgatctgaaagaggctgctaagagactgaacattgattgggatacagctgcagagattgacgatgctgatgttaaggatgagtcagatgtgccttcagttgtgggctacggagcactgtacttagtcacactttttccagtcattatcgtttcagatgaaatgcttcatatctcaagctatggcattccaaacataacgatggaaaagcagatttctgtagatccaatatcattgaatagagaattgagtgacaatccagtgcagaccgttgttactactccaaagccaaaaggaccgaaccaactgccgcccctattgcctcctacaaattccaagtttttaagcttaagtctgccaaattcagcagcctcatcgccacgatttggcacctcattgttgaagaagaaatggaagaatgaaaggcgagtatctccccagcaagttgaggacgtgaaccacctccactctgcatcctacaacccgcttcctctgcaacaagaacaatttcgacggaccaagtcgtgcggtgaaggaagagaatatgctcctgatgactttgatctttggctgattcaaccaaatgccattgagattgtcaacaaagcatataccaattacactagcttctccaaaactgaaatcaacagagctgtgcataaaaatggcaagaacaatgatccaagtgatgatatcgatgagttcaaatgtggagctctctgcctttaccttcctggcttcggcagcaaggcaaagccagtgagagcaagaaagggagaatccgaactgcgaaatcgaaatgtcatctctagatcagtttccttggaaaaatttgagtgtggttcttgggcttctcaagttatggtaagtgggaatttagaggactccatgggtcactttgatctgccactggagttgataagaggcaatgtgaacgatgcacattcaccagttactacaggtttcctctttgacaaggatataaaaggagtcctgaagaatggctcagccagaacatcagcagctagaaaatcacatgagtcgccacgccacgttcggttttcgacttcatctccaaagtcttaccctgcttcaccgggttcttgcatcacgcctcgcttgcgcaaagctagagaggatttcaatgccttcttagaagcacagagtgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

46.62

Weight (kDa)

8.87

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1214
AccB1I	GGYRCC	1 cut(s)	479
AccB7I	CCANNNNNTGG	1 cut(s)	476
AciI	CCGC	3 cut(s)	401, 575, 618
AclWI	GGATC	2 cut(s)	308, 764
AcsI	RAATTY	4 cut(s)	421, 451, 920, 964
AcuI	CTGAAG	2 cut(s)	171, 1106
AdeI	CACNNNGTG	1 cut(s)	1256
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	476, 830
AflII	CTTAAG	1 cut(s)	439
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	5 cut(s)	328, 493, 668, 796, 1234
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	2 cut(s)	52, 823
AluBI	AGCT	8 cut(s)	140, 270, 438, 717, 743, 806, 1115, 1220
AluI	AGCT	8 cut(s)	140, 270, 438, 717, 743, 806, 1115, 1220
Alw21I	GWGCWC	2 cut(s)	208, 808
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	308, 764
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	5 cut(s)	107, 140, 458, 834, 1112
ApoI	RAATTY	4 cut(s)	421, 451, 920, 964
AsiGI	ACCGGT	1 cut(s)	86
Asp700I	GAANNNNTTC	2 cut(s)	255, 597
AspLEI	GCGC	1 cut(s)	1215
AspS9I	GGNCC	3 cut(s)	12, 386, 606
AsuC2I	CCSGG	1 cut(s)	1188
AsuHPI	GGTGA	3 cut(s)	632, 1029, 1176
AvaII	GGWCC	2 cut(s)	386, 606
BanI	GGYRCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	808
Bbv12I	GWGCWC	2 cut(s)	208, 808
BbvI	GCAGC	5 cut(s)	94, 127, 470, 846, 1124
BccI	CCATC	2 cut(s)	3, 286
BcgI	CGANNNNNNTGC	4 cut(s)	379, 413, 447, 481
BciT130I	CCWGG	2 cut(s)	54, 825
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	1188
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	5 cut(s)	20, 714, 900, 1116, 1221
BfmI	CTRYAG	3 cut(s)	141, 309, 1047
BfrI	CTTAAG	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	6 cut(s)	108, 141, 401, 459, 835, 1113
BlpI	GCTNAGC	1 cut(s)	1096
BlsI	GCNGC	6 cut(s)	109, 142, 402, 460, 836, 1114
Bme1390I	CCNGG	3 cut(s)	54, 825, 1188
Bme18I	GGWCC	2 cut(s)	386, 606
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	3 cut(s)	12, 386, 606
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	3 cut(s)	54, 825, 1188
BmsI	GCATC	4 cut(s)	145, 572, 1018, 1206
BpmI	CTGGAG	1 cut(s)	1022
Bpu1102I	GCTNAGC	1 cut(s)	1096
BpuEI	CTTGAG	2 cut(s)	250, 930
BpuMI	CCSGG	1 cut(s)	1188
Bsa29I	ATCGAT	2 cut(s)	7, 786
BsaJI	CCNNGG	2 cut(s)	912, 978
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	1147, 1177
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 830
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	5 cut(s)	230, 350, 848, 1005, 1040
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	2 cut(s)	54, 825
BseCI	ATCGAT	2 cut(s)	7, 786
BseDI	CCNNGG	2 cut(s)	912, 978
BseGI	GGATG	2 cut(s)	175, 563
BseLI	CCNNNNNNNGG	2 cut(s)	476, 830
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	1 cut(s)	1110
BseNI	ACTGG	5 cut(s)	230, 350, 848, 1005, 1040
BseXI	GCAGC	5 cut(s)	94, 127, 470, 846, 1124
BseYI	CCCAGC	1 cut(s)	528
BsgI	GTGCAG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	479
BshTI	ACCGGT	1 cut(s)	86
BshVI	ATCGAT	2 cut(s)	7, 786
BsiHKAI	GWGCWC	2 cut(s)	208, 808
BsiSI	CCGG	2 cut(s)	87, 1187
BslI	CCNNNNNNNGG	2 cut(s)	476, 830
BsmAI	GTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	208, 808
Bsp143I	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
Bsp1720I	GCTNAGC	1 cut(s)	1096
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	3 cut(s)	401, 575, 618
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	1109
BspDI	ATCGAT	2 cut(s)	7, 786
BspLI	GGNNCC	1 cut(s)	481
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	308, 764
BspT107I	GGYRCC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	1024
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	5 cut(s)	230, 350, 848, 1005, 1040
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	912, 978
BssMI	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
BssT1I	CCWWGG	2 cut(s)	912, 978
Bst2UI	CCWGG	2 cut(s)	54, 825
Bst4CI	ACNGT	2 cut(s)	210, 361
Bst6I	CTCTTC	1 cut(s)	622
BstAFI	CTTAAG	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	1256
BstC8I	GCNNGC	1 cut(s)	1211
BstDEI	CTNAG	4 cut(s)	111, 214, 1096, 1243
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	2 cut(s)	175, 563
BstHHI	GCGC	1 cut(s)	1215
BstKTI	GATC	6 cut(s)	97, 316, 655, 772, 905, 994
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
BstMWI	GCNNNNNNNGC	5 cut(s)	409, 583, 834, 1210, 1256
BstNI	CCWGG	2 cut(s)	54, 825
BstSCI	CCNGG	3 cut(s)	52, 823, 1186
BstSFI	CTRYAG	3 cut(s)	141, 309, 1047
BstV1I	GCAGC	5 cut(s)	94, 127, 470, 846, 1124
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
Bsu15I	ATCGAT	2 cut(s)	7, 786
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	13
BsuTUI	ATCGAT	2 cut(s)	7, 786
BtgI	CCRYGG	1 cut(s)	978
BtgZI	GCGATG	1 cut(s)	450
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	175, 563
BtsIMutI	CAGTG	4 cut(s)	206, 357, 855, 998
Cac8I	GCNNGC	1 cut(s)	1211
CfoI	GCGC	1 cut(s)	1215
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	12, 386, 606
ClaI	ATCGAT	2 cut(s)	7, 786
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	987, 1022
CviAII	CATG	3 cut(s)	979, 1127, 1260
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	4 cut(s)	111, 214, 1096, 1243
DpnI	GATC	6 cut(s)	96, 315, 654, 771, 904, 993
DpnII	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
DraIII	CACNNNGTG	1 cut(s)	1256
Eam1104I	CTCTTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	622
Ecl136II	GAGCTC	1 cut(s)	806
Eco130I	CCWWGG	2 cut(s)	912, 978
Eco24I	GRGCYC	1 cut(s)	808
Eco32I	GATATC	1 cut(s)	784
Eco47I	GGWCC	2 cut(s)	386, 606
Eco53kI	GAGCTC	1 cut(s)	806
Eco57I	CTGAAG	2 cut(s)	171, 1106
EcoICRI	GAGCTC	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	52, 823
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	2 cut(s)	912, 978
EcoT38I	GRGCYC	1 cut(s)	808
ErhI	CCWWGG	2 cut(s)	912, 978
FaeI	CATG	3 cut(s)	982, 1130, 1263
FatI	CATG	3 cut(s)	978, 1126, 1259
FauI	CCCGC	1 cut(s)	582
Fnu4HI	GCNGC	6 cut(s)	108, 141, 401, 459, 835, 1113
FokI	GGATG	2 cut(s)	182, 550
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	6 cut(s)	108, 141, 401, 459, 835, 1113
FspBI	CTAG	5 cut(s)	20, 714, 900, 1116, 1221
FspI	TGCGCA	1 cut(s)	1214
GlaI	GCGC	1 cut(s)	1214
GluI	GCNGC	6 cut(s)	108, 141, 401, 459, 835, 1113
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	1022
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	2 cut(s)	87, 1187
HhaI	GCGC	1 cut(s)	1215
Hin1II	CATG	3 cut(s)	982, 1130, 1263
Hin6I	GCGC	1 cut(s)	1213
HinP1I	GCGC	1 cut(s)	1213
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	8 cut(s)	4, 75, 173, 664, 869, 974, 1080, 1130
HpaII	CCGG	2 cut(s)	87, 1187
HphI	GGTGA	3 cut(s)	632, 1029, 1176
Hpy166II	GTNNAC	3 cut(s)	547, 691, 1024
Hpy188I	TCNGA	5 cut(s)	30, 99, 178, 247, 874
Hpy188III	TCNNGA	4 cut(s)	20, 641, 900, 1084
Hpy8I	GTNNAC	3 cut(s)	547, 691, 1024
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	4 cut(s)	195, 617, 830, 1249
HpyCH4III	ACNGT	2 cut(s)	210, 361
HpyCH4IV	ACGT	2 cut(s)	543, 1143
HpyCH4V	TGCA	9 cut(s)	71, 143, 355, 563, 586, 748, 1031, 1197, 1259
HpyF10VI	GCNNNNNNNGC	5 cut(s)	409, 583, 834, 1210, 1256
HpyF3I	CTNAG	4 cut(s)	111, 214, 1096, 1243
HpySE526I	ACGT	2 cut(s)	543, 1143
Hsp92II	CATG	3 cut(s)	982, 1130, 1263
HspAI	GCGC	1 cut(s)	1213
Kzo9I	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
LmnI	GCTCC	3 cut(s)	203, 643, 803
Lsp1109I	GCAGC	5 cut(s)	94, 127, 470, 846, 1124
LweI	GCATC	4 cut(s)	145, 572, 1018, 1206
MaeI	CTAG	5 cut(s)	20, 714, 900, 1116, 1221
MaeII	ACGT	2 cut(s)	543, 1143
MaeIII	GTNAC	6 cut(s)	76, 217, 341, 364, 983, 1042
MalI	GATC	6 cut(s)	96, 315, 654, 771, 904, 993
MboI	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
MboII	GAAGA	5 cut(s)	505, 508, 517, 639, 1099
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	208, 808
MluCI	AATT	7 cut(s)	335, 421, 451, 596, 706, 920, 964
MlyI	GAGTC	5 cut(s)	84, 182, 968, 1089, 1139
MroXI	GAANNNNTTC	2 cut(s)	255, 597
MseI	TTAA	4 cut(s)	33, 165, 434, 440
MslI	CAYNNNNRTG	2 cut(s)	290, 753
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	2 cut(s)	87, 1187
MspR9I	CCNGG	3 cut(s)	54, 825, 1188
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	54, 825
MwoI	GCNNNNNNNGC	5 cut(s)	409, 583, 834, 1210, 1256
NciI	CCSGG	1 cut(s)	1188
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
NlaIII	CATG	3 cut(s)	982, 1130, 1263
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	4 cut(s)	76, 217, 341, 983
NsbI	TGCGCA	1 cut(s)	1214
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	2 cut(s)	255, 597
PfeI	GAWTC	3 cut(s)	4, 664, 869
PflFI	GACNNNGTC	1 cut(s)	610
PflMI	CCANNNNNTGG	1 cut(s)	476
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	6 cut(s)	109, 142, 402, 460, 836, 1114
PleI	GAGTC	5 cut(s)	83, 181, 968, 1088, 1138
PpsI	GAGTC	5 cut(s)	83, 181, 968, 1088, 1138
Psp124BI	GAGCTC	1 cut(s)	808
Psp6I	CCWGG	2 cut(s)	52, 823
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	2 cut(s)	52, 823
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	3 cut(s)	12, 386, 606
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	610
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	290, 753
SacI	GAGCTC	1 cut(s)	808
SaqAI	TTAA	4 cut(s)	33, 165, 434, 440
SatI	GCNGC	6 cut(s)	108, 141, 401, 459, 835, 1113
Sau3AI	GATC	6 cut(s)	94, 313, 652, 769, 902, 991
Sau96I	GGNCC	3 cut(s)	12, 386, 606
SchI	GAGTC	5 cut(s)	84, 182, 968, 1089, 1139
ScrFI	CCNGG	3 cut(s)	54, 825, 1188
SduI	GDGCHC	2 cut(s)	208, 808
SfaNI	GCATC	4 cut(s)	145, 572, 1018, 1206
SfcI	CTRYAG	3 cut(s)	141, 309, 1047
SinI	GGWCC	2 cut(s)	386, 606
SmiMI	CAYNNNNRTG	2 cut(s)	290, 753
SmlI	CTYRAG	3 cut(s)	265, 439, 945
SmoI	CTYRAG	3 cut(s)	265, 439, 945
Sse9I	AATT	7 cut(s)	335, 421, 451, 596, 706, 920, 964
SsiI	CCGC	3 cut(s)	401, 575, 618
SspMI	CTAG	5 cut(s)	20, 714, 900, 1116, 1221
SstI	GAGCTC	1 cut(s)	808
StyD4I	CCNGG	3 cut(s)	52, 823, 1186
StyI	CCWWGG	2 cut(s)	912, 978
TaaI	ACNGT	2 cut(s)	210, 361
TaiI	ACGT	2 cut(s)	546, 1146
TaqI	TCGA	5 cut(s)	7, 601, 786, 886, 1154
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	7 cut(s)	335, 421, 451, 596, 706, 920, 964
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	3 cut(s)	4, 664, 869
Tru1I	TTAA	4 cut(s)	33, 165, 434, 440
Tru9I	TTAA	4 cut(s)	33, 165, 434, 440
TscAI	CASTG	4 cut(s)	213, 357, 855, 1005
TseFI	GTSAC	4 cut(s)	76, 217, 341, 983
TseI	GCWGC	5 cut(s)	107, 140, 458, 834, 1112
Tsp45I	GTSAC	4 cut(s)	76, 217, 341, 983
TspDTI	ATGAA	5 cut(s)	17, 248, 264, 525, 1149
TspGWI	ACGGA	2 cut(s)	216, 619
TspRI	CASTG	4 cut(s)	213, 357, 855, 1005
Tth111I	GACNNNGTC	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	386, 606
XapI	RAATTY	4 cut(s)	421, 451, 920, 964
XbaI	TCTAGA	2 cut(s)	19, 899
XmnI	GAANNNNTTC	2 cut(s)	255, 597
XspI	CTAG	5 cut(s)	20, 714, 900, 1116, 1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.