Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Reverse (-)

16780531 .. 16793733

Gene Structure 13203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATGATGACGAGTTCGCACATGCTCCAGGTGGCGCCACTCGCACCACACGCTTCCTCATCATCATCTTCTTCTTCTTCTTCGTCCCAAACCCTCCCGGTCTGGTTCAACCATTGCCATTGCCACCCTTCACGGTCTCAGCTCACTCTCCGCCACCGCCCAAGGCCCACAATACTACTCGCCGGAAACCCAGATAGGAAGTTGCAAGTTTCATCGTCTTCGTCGTCATCTTGGAGTACCCAACAAGACCAGGACGACGAAGAAGAAGAAGATGAAGACGATGACCAACAACAAGAAGAAGAAAGTGACCCTACTCCTGACGACCTCGAATACATCAGCCAAATCAAAAGGGTGCTGGAGCTTCTTAAAAAGAACAGAGACATGATTTTCAATGAGGTTAAGCTTACCATAGCGATTGAGGACATAAGAGAAGTTGAGCGGAGGAGACTCCTTGGCATTGAGGATCCTGATGCTCCGACCAGGGAAGAGTTAGCTGCTGTTCTTGAAGAAGTGCATGAGGGAAAAATCCCCAAAAATCGACTTGCACTTAAACTGCTAGCTGAGGAAATGAATCGATGGCCCAATCTAGAGGTTCAGATTAAACCAGCAAAGAAAAAGCCAGGAAAATCACTATATGCAAGAGTCACAGACACCGGTATTGATCTGAAAGAGGCTGCTAAGAGACTGAACATTGATTGGGATACAGCTGCAGAGATTGACGATGCTGATGTTAAGGATGAGTCAGATGTGCCTTCAGTTGTGGGCTACGGAGCACTGTATTTAGTCACACTTTTTCCAGTCATTATCGGTGTATCAGTGGTATTAATTTTATTTTACAATTCACTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010035 GO:0010286 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0080183 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.9

Weight (kDa)

4.81

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	439
AciI	CCGC	3 cut(s)	151, 157, 439
AclWI	GGATC	2 cut(s)	458, 471
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	238
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	3 cut(s)	109, 391, 506
AjnI	CCWGG	4 cut(s)	27, 249, 479, 619
AluBI	AGCT	6 cut(s)	142, 361, 403, 494, 560, 707
AluI	AGCT	6 cut(s)	142, 361, 403, 494, 560, 707
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	4 cut(s)	141, 372, 439, 676
AlwI	GGATC	2 cut(s)	458, 471
AoxI	GGCC	2 cut(s)	164, 578
ApeKI	GCWGC	3 cut(s)	494, 674, 707
AseI	ATTAAT	1 cut(s)	824
AsiGI	ACCGGT	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	165, 579
AsuC2I	CCSGG	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	556
BamHI	GGATCC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	210, 282
Bbv12I	GWGCWC	1 cut(s)	775
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	481, 661, 694
BccI	CCATC	1 cut(s)	570
BciT130I	CCWGG	4 cut(s)	29, 251, 481, 621
BciVI	GTATCC	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	4 cut(s)	141, 372, 439, 676
BfaI	CTAG	2 cut(s)	557, 587
BfmI	CTRYAG	1 cut(s)	708
BfoI	RGCGCY	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	3 cut(s)	495, 675, 708
BlsI	GCNGC	3 cut(s)	496, 676, 709
Bme1390I	CCNGG	5 cut(s)	29, 98, 251, 481, 621
BmgT120I	GGNCC	2 cut(s)	165, 579
BmiI	GGNNCC	2 cut(s)	36, 465
BmrFI	CCNGG	5 cut(s)	29, 98, 251, 481, 621
BmsI	GCATC	2 cut(s)	460, 712
BmtI	GCTAGC	1 cut(s)	560
BpiI	GAAGAC	2 cut(s)	210, 282
BpmI	CTGGAG	3 cut(s)	11, 377, 830
Bpu10I	CCTNAGC	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	161, 451, 480
BsaWI	WCCGGW	1 cut(s)	653
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	2 cut(s)	797, 847
Bse3DI	GCAATG	2 cut(s)	112, 118
BseBI	CCWGG	4 cut(s)	29, 251, 481, 621
BseCI	ATCGAT	1 cut(s)	574
BseDI	CCNNGG	3 cut(s)	161, 451, 480
BseGI	GGATG	1 cut(s)	742
BseMI	GCAATG	2 cut(s)	112, 118
BseMII	CTCAG	2 cut(s)	152, 552
BseNI	ACTGG	2 cut(s)	797, 847
BseRI	GAGGAG	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	481, 661, 694
BshFI	GGCC	2 cut(s)	166, 580
BshNI	GGYRCC	1 cut(s)	34
BshTI	ACCGGT	1 cut(s)	653
BshVI	ATCGAT	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	3 cut(s)	98, 183, 654
BslFI	GGGAC	1 cut(s)	70
BsmAI	GTCTC	4 cut(s)	141, 372, 439, 676
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	166, 580
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp143I	GATC	2 cut(s)	463, 661
BspACI	CCGC	3 cut(s)	151, 157, 439
BspANI	GGCC	2 cut(s)	166, 580
BspCNI	CTCAG	2 cut(s)	151, 553
BspDI	ATCGAT	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	36, 465
BspMAI	CTGCAG	1 cut(s)	712
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	458, 471
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	112, 118
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	797, 847
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	3 cut(s)	161, 451, 480
BssMI	GATC	2 cut(s)	463, 661
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	161, 451
Bst2UI	CCWGG	4 cut(s)	29, 251, 481, 621
Bst4CI	ACNGT	2 cut(s)	135, 777
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	138, 561, 678
BstF5I	GGATG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	466, 664
BstMAI	GTCTC	4 cut(s)	141, 372, 439, 676
BstMBI	GATC	2 cut(s)	463, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	4 cut(s)	29, 251, 481, 621
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	5 cut(s)	27, 96, 249, 479, 619
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	481, 661, 694
BstV2I	GAAGAC	2 cut(s)	210, 282
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	166, 580
BsuTUI	ATCGAT	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	2 cut(s)	773, 822
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	165, 579
ClaI	ATCGAT	1 cut(s)	574
Csp6I	GTAC	1 cut(s)	237
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	3 cut(s)	22, 382, 515
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	3 cut(s)	138, 561, 678
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	2 cut(s)	465, 663
DpnII	GATC	2 cut(s)	463, 661
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	161, 451
Eco31I	GGTCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	738
EcoRII	CCWGG	4 cut(s)	27, 249, 479, 619
EcoT14I	CCWWGG	2 cut(s)	161, 451
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	161, 451
FaeI	CATG	3 cut(s)	25, 385, 518
FaiI	YATR	7 cut(s)	23, 383, 410, 425, 516, 634, 636
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	21, 381, 514
Fnu4HI	GCNGC	3 cut(s)	495, 675, 708
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	495, 675, 708
FspBI	CTAG	2 cut(s)	557, 587
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	495, 675, 708
GsuI	CTGGAG	3 cut(s)	11, 377, 830
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	166, 580
HapII	CCGG	3 cut(s)	98, 183, 654
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	25, 385, 518
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	4 cut(s)	447, 571, 642, 740
HpaII	CCGG	3 cut(s)	98, 183, 654
Hpy188I	TCNGA	4 cut(s)	477, 597, 666, 745
Hpy188III	TCNNGA	4 cut(s)	317, 467, 503, 587
Hpy99I	CGWCG	2 cut(s)	226, 260
HpyAV	CCTTC	2 cut(s)	138, 762
HpyCH4III	ACNGT	2 cut(s)	135, 777
HpyCH4V	TGCA	5 cut(s)	205, 514, 545, 638, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	3 cut(s)	138, 561, 678
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	25, 385, 518
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	463, 661
LmnI	GCTCC	4 cut(s)	30, 358, 478, 770
Lsp1109I	GCAGC	3 cut(s)	481, 661, 694
LweI	GCATC	2 cut(s)	460, 712
MaeI	CTAG	2 cut(s)	557, 587
MaeIII	GTNAC	3 cut(s)	305, 643, 784
MalI	GATC	2 cut(s)	465, 663
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	2 cut(s)	463, 661
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	2 cut(s)	825, 838
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	441, 651, 749
MmeI	TCCRAC	1 cut(s)	500
MseI	TTAA	6 cut(s)	366, 399, 549, 600, 732, 824
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	3 cut(s)	98, 183, 654
MspR9I	CCNGG	5 cut(s)	29, 98, 251, 481, 621
MvaI	CCWGG	4 cut(s)	29, 251, 481, 621
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NarI	GGCGCC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	463, 661
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	3 cut(s)	25, 385, 518
NlaIV	GGNNCC	2 cut(s)	36, 465
NmuCI	GTSAC	3 cut(s)	305, 643, 784
NspI	RCATGY	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	571
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	496, 676, 709
PleI	GAGTC	3 cut(s)	441, 650, 748
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	3 cut(s)	441, 650, 748
PshBI	ATTAAT	1 cut(s)	824
Psp6I	CCWGG	4 cut(s)	27, 249, 479, 619
PspGI	CCWGG	4 cut(s)	27, 249, 479, 619
PspN4I	GGNNCC	2 cut(s)	36, 465
PspPI	GGNCC	2 cut(s)	165, 579
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	6 cut(s)	366, 399, 549, 600, 732, 824
SatI	GCNGC	3 cut(s)	495, 675, 708
Sau3AI	GATC	2 cut(s)	463, 661
Sau96I	GGNCC	2 cut(s)	165, 579
SchI	GAGTC	3 cut(s)	441, 651, 749
ScrFI	CCNGG	5 cut(s)	29, 98, 251, 481, 621
SduI	GDGCHC	1 cut(s)	775
SfaNI	GCATC	2 cut(s)	460, 712
SfcI	CTRYAG	1 cut(s)	708
SfoI	GGCGCC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	825, 838
SsiI	CCGC	3 cut(s)	151, 157, 439
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	2 cut(s)	557, 587
StyD4I	CCNGG	5 cut(s)	27, 96, 249, 479, 619
StyI	CCWWGG	2 cut(s)	161, 451
TaaI	ACNGT	2 cut(s)	135, 777
TaqI	TCGA	3 cut(s)	327, 538, 574
TasI	AATT	2 cut(s)	825, 838
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	6 cut(s)	366, 399, 549, 600, 732, 824
Tru9I	TTAA	6 cut(s)	366, 399, 549, 600, 732, 824
TscAI	CASTG	2 cut(s)	780, 822
TseFI	GTSAC	3 cut(s)	305, 643, 784
TseI	GCWGC	3 cut(s)	494, 674, 707
Tsp45I	GTSAC	3 cut(s)	305, 643, 784
TspDTI	ATGAA	3 cut(s)	201, 288, 584
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	2 cut(s)	780, 822
VspI	ATTAAT	1 cut(s)	824
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	2 cut(s)	557, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.