AT5G44660

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
18015522 .. 18017307
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44660.2

Sequence Viewer

Length: 1272 bp
ATGGTGGCTGCAGTACTTATGCCAACTATTAGTTTCAGAGACGAAAGTGCTCGCGAGGATTGGCAAGTTCTAAGCAGAAACGATTCAAAGAAGAAGATTCTAGTCAAGCAAACGAGTATGATGCAATCCGAGAGAGAGATATCGATGGATCCGAAATCAATCAGGTCGTTGTCTATGTCGGGTTCGTTGAGAAGGAACGATAGCTTCGATATGGTTCGTTTACCGGCAATGTCACCTCCTAGAGACTTAGATTCGCCTATGCCTCTTCCTTTGCAGCCAGTGCAGACTACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAGCCTCCCAAACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCCTTCCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAACAAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAACAAGGAACAAGACTCGTCTTCGGCGTCGTACAAGAGAAGCAAATCTTGTGGGTCTACTAGCAAGACACTCTCTCATAAGAGCAGCGGAATCAGAAACTCTTTCTTCATTAAAACCGATTCGAACAAGAGCATCAGCAATAATAGTACATTAGAAGACAGATTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGGAAAACCGATCAGATCATCACAGAAAGACGATTCTTCTTCCTTCACCCGAACCACCACGATGACGAGATCATCATCCTCTACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACAGTGATCTCCGCTCGAGCTTCAATGGAGAAATTCGATTGCGGCTCATATACTTCGGAATCCTGCGGAGAGGAAGGAGGAAATCACTTCTTTGACTTACCGTCCGAGCTAATCAAAAGTGGTTCAGGTGATAACGACCATGACGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACCTGTTGAGAAAGAGATCAAAGGTGTTTTAAAGGTTTCTGGTTCGAAAAACAGAAAAGCAATGGAGTCTCCTTCACTGCGTCAGGTTCGATTCTCCACATCATCGCCGGTTTCATACCCGACGTCTCCGGCGATCTCTCCACGGTTATTAGAAGCCACCAAGAATTTTAATGCTTTCTTGGAAGCTCAAGCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

423

Amino Acids

46.64

Weight (kDa)

9.96

Isoelectric Point (pI)

72.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1199
AccBSI CCGCTC 1 cut(s) 908
AccI GTMKAC 1 cut(s) 611
AccII CGCG 1 cut(s) 54
AciI CCGC 9 cut(s) 322, 388, 466, 544, 642, 906, 936, 960, 1052
AclI AACGTT 4 cut(s) 307, 373, 451, 529
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 2 cut(s) 926, 1237
AcyI GRCGYC 2 cut(s) 581, 1196
AfaI GTAC 3 cut(s) 15, 587, 703
AgeI ACCGGT 1 cut(s) 1042
AgsI TTSAA 4 cut(s) 87, 721, 858, 918
AhdI GACNNNNNGTC 1 cut(s) 994
AjuI GAANNNNNNNTTGG 4 cut(s) 402, 434, 514, 546
AluBI AGCT 4 cut(s) 204, 914, 1003, 1259
AluI AGCT 4 cut(s) 204, 914, 1003, 1259
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 9 cut(s) 33, 237, 320, 386, 464, 542, 871, 1146, 1203
AlwI GGATC 2 cut(s) 143, 156
Ama87I CYCGRG 1 cut(s) 909
AoxI GGCC 2 cut(s) 468, 546
ApaI GGGCCC 2 cut(s) 472, 550
ApeKI GCWGC 3 cut(s) 8, 274, 639
ApoI RAATTY 2 cut(s) 926, 1237
AsiGI ACCGGT 1 cut(s) 1042
Asp700I GAANNNNTTC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 5 cut(s) 406, 468, 469, 546, 547
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 3 cut(s) 225, 799, 1034
AsuII TTCGAA 2 cut(s) 677, 1118
AvaI CYCGRG 1 cut(s) 909
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 2 cut(s) 472, 550
BamHI GGATCC 1 cut(s) 148
BanII GRGCYC 2 cut(s) 472, 550
BbsI GAAGAC 2 cut(s) 567, 717
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 286, 651
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 1250
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 1 cut(s) 750
BcoDI GTCTC 9 cut(s) 33, 237, 320, 386, 464, 542, 871, 1146, 1203
BfaI CTAG 3 cut(s) 101, 240, 615
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 329
BisI GCNGC 5 cut(s) 9, 275, 640, 937, 1053
BlsI GCNGC 5 cut(s) 10, 276, 641, 938, 1054
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 1 cut(s) 406
BmeRI GACNNNNNGTC 1 cut(s) 994
BmeT110I CYCGRG 1 cut(s) 909
BmgT120I GGNCC 5 cut(s) 406, 468, 469, 546, 547
BmiI GGNNCC 4 cut(s) 150, 470, 548, 1074
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 2 cut(s) 111, 696
BpiI GAAGAC 2 cut(s) 567, 717
Bpu14I TTCGAA 2 cut(s) 677, 1118
BpuEI CTTGAG 1 cut(s) 1245
BpuMI CCSGG 1 cut(s) 750
Bsa29I ATCGAT 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 835
BsaHI GRCGYC 2 cut(s) 581, 1196
BsaI GGTCTC 4 cut(s) 320, 386, 464, 542
BsaJI CCNNGG 2 cut(s) 748, 1214
BsaWI WCCGGW 1 cut(s) 1042
BsaXI ACNNNNNCTCC 6 cut(s) 280, 310, 424, 454, 502, 532
Bse118I RCCGGY 3 cut(s) 223, 1042, 1180
Bse1I ACTGG 4 cut(s) 278, 295, 439, 517
Bse3DI GCAATG 2 cut(s) 234, 1140
Bse8I GATNNNNATC 1 cut(s) 835
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 748, 1214
BseGI GGATG 1 cut(s) 836
BseJI GATNNNNATC 1 cut(s) 835
BseMI GCAATG 2 cut(s) 234, 1140
BseMII CTCAG 3 cut(s) 343, 487, 565
BseNI ACTGG 4 cut(s) 278, 295, 439, 517
BseSI GKGCMC 2 cut(s) 472, 550
BseXI GCAGC 2 cut(s) 286, 651
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 470, 548
BshTI ACCGGT 1 cut(s) 1042
BshVI ATCGAT 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 909
BsiSI CCGG 5 cut(s) 224, 750, 1043, 1181, 1202
BsmAI GTCTC 9 cut(s) 33, 237, 320, 386, 464, 542, 871, 1146, 1203
BsmBI CGTCTC 2 cut(s) 33, 1203
BsnI GGCC 2 cut(s) 470, 548
Bso31I GGTCTC 4 cut(s) 320, 386, 464, 542
BsoBI CYCGRG 1 cut(s) 909
Bsp119I TTCGAA 2 cut(s) 677, 1118
Bsp120I GGGCCC 2 cut(s) 468, 546
Bsp1286I GDGCHC 3 cut(s) 52, 472, 550
Bsp143I GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
Bsp68I TCGCGA 1 cut(s) 54
BspACI CCGC 9 cut(s) 322, 388, 466, 544, 642, 906, 936, 960, 1052
BspANI GGCC 2 cut(s) 470, 548
BspCNI CTCAG 3 cut(s) 342, 486, 564
BspDI ATCGAT 1 cut(s) 143
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 4 cut(s) 150, 470, 548, 1074
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 2 cut(s) 143, 156
BspT104I TTCGAA 2 cut(s) 677, 1118
BspTNI GGTCTC 4 cut(s) 320, 386, 464, 542
BsrBI CCGCTC 1 cut(s) 908
BsrDI GCAATG 2 cut(s) 234, 1140
BsrFI RCCGGY 3 cut(s) 223, 1042, 1180
BsrI ACTGG 4 cut(s) 278, 295, 439, 517
BssAI RCCGGY 3 cut(s) 223, 1042, 1180
BssECI CCNNGG 2 cut(s) 748, 1214
BssMI GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
BssNI GRCGYC 2 cut(s) 581, 1196
Bst4CI ACNGT 5 cut(s) 853, 865, 898, 996, 1218
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 2 cut(s) 581, 1196
BstAPI GCANNNNNTGC 1 cut(s) 280
BstBI TTCGAA 2 cut(s) 677, 1118
BstC8I GCNNGC 5 cut(s) 52, 324, 390, 468, 546
BstDEI CTNAG 5 cut(s) 71, 247, 329, 473, 551
BstDSI CCRYGG 1 cut(s) 1214
BstF5I GGATG 1 cut(s) 836
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 7 cut(s) 151, 774, 779, 833, 903, 1092, 1209
BstMAI GTCTC 9 cut(s) 33, 237, 320, 386, 464, 542, 871, 1146, 1203
BstMBI GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 748
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 2 cut(s) 472, 550
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 286, 651
BstV2I GAAGAC 2 cut(s) 567, 717
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
Bsu15I ATCGAT 1 cut(s) 143
BsuRI GGCC 2 cut(s) 470, 548
BsuTUI ATCGAT 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 1214
BtgZI GCGATG 1 cut(s) 1161
BtsCI GGATG 1 cut(s) 836
BtsI GCAGTG 1 cut(s) 1148
BtsIMutI CAGTG 5 cut(s) 285, 432, 510, 903, 1148
BtuMI TCGCGA 1 cut(s) 54
Cac8I GCNNGC 5 cut(s) 52, 324, 390, 468, 546
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 3 cut(s) 223, 1042, 1180
Cfr13I GGNCC 5 cut(s) 406, 468, 469, 546, 547
ClaI ATCGAT 1 cut(s) 143
CseI GACGC 2 cut(s) 570, 1142
Csp6I GTAC 3 cut(s) 14, 586, 702
CspAI ACCGGT 1 cut(s) 1042
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 5 cut(s) 319, 385, 463, 541, 1034
CviQI GTAC 3 cut(s) 14, 586, 702
DdeI CTNAG 5 cut(s) 71, 247, 329, 473, 551
DpnI GATC 7 cut(s) 150, 773, 778, 832, 902, 1091, 1208
DpnII GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
DraI TTTAAA 1 cut(s) 1104
DriI GACNNNNNGTC 1 cut(s) 994
Eam1104I CTCTTC 1 cut(s) 270
Eam1105I GACNNNNNGTC 1 cut(s) 994
EarI CTCTTC 1 cut(s) 270
Eco24I GRGCYC 2 cut(s) 472, 550
Eco31I GGTCTC 4 cut(s) 320, 386, 464, 542
Eco32I GATATC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 909
EcoO109I RGGNCCY 2 cut(s) 469, 547
EcoRV GATATC 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 472, 550
Esp3I CGTCTC 2 cut(s) 33, 1203
FaeI CATG 5 cut(s) 322, 388, 466, 544, 1037
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 586, 618
FatI CATG 5 cut(s) 318, 384, 462, 540, 1033
FauI CCCGC 4 cut(s) 315, 381, 459, 537
FblI GTMKAC 1 cut(s) 611
Fnu4HI GCNGC 5 cut(s) 9, 275, 640, 937, 1053
FokI GGATG 1 cut(s) 823
FriOI GRGCYC 2 cut(s) 472, 550
Fsp4HI GCNGC 5 cut(s) 9, 275, 640, 937, 1053
FspBI CTAG 3 cut(s) 101, 240, 615
GlaI GCGC 1 cut(s) 327
GluI GCNGC 5 cut(s) 9, 275, 640, 937, 1053
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 2 cut(s) 470, 548
HapII CCGG 5 cut(s) 224, 750, 1043, 1181, 1202
HgaI GACGC 2 cut(s) 570, 1142
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 2 cut(s) 581, 1196
Hin1II CATG 5 cut(s) 322, 388, 466, 544, 1037
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HpaII CCGG 5 cut(s) 224, 750, 1043, 1181, 1202
HphI GGTGA 3 cut(s) 225, 799, 1034
Hpy166II GTNNAC 2 cut(s) 221, 612
Hpy188III TCNNGA 2 cut(s) 53, 858
Hpy8I GTNNAC 2 cut(s) 221, 612
Hpy99I CGWCG 2 cut(s) 586, 1198
HpyAV CCTTC 5 cut(s) 186, 428, 814, 962, 1155
HpyCH4III ACNGT 5 cut(s) 853, 865, 898, 996, 1218
HpyCH4IV ACGT 5 cut(s) 307, 373, 451, 529, 1196
HpyCH4V TGCA 5 cut(s) 11, 124, 274, 283, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 5 cut(s) 71, 247, 329, 473, 551
HpySE526I ACGT 5 cut(s) 307, 373, 451, 529, 1196
Hsp92I GRCGYC 2 cut(s) 581, 1196
Hsp92II CATG 5 cut(s) 322, 388, 466, 544, 1037
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
Lsp1109I GCAGC 2 cut(s) 286, 651
LweI GCATC 2 cut(s) 111, 696
MaeI CTAG 3 cut(s) 101, 240, 615
MaeII ACGT 5 cut(s) 307, 373, 451, 529, 1196
MaeIII GTNAC 1 cut(s) 231
MalI GATC 7 cut(s) 150, 773, 778, 832, 902, 1091, 1208
MbiI CCGCTC 1 cut(s) 908
MboI GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
MboII GAAGA 8 cut(s) 103, 106, 257, 567, 652, 722, 789, 792
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 3 cut(s) 52, 472, 550
MluCI AATT 2 cut(s) 926, 1237
MlyI GAGTC 2 cut(s) 563, 1148
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 4 cut(s) 666, 1103, 1242, 1270
MslI CAYNNNNRTG 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 642, 1052
MspI CCGG 5 cut(s) 224, 750, 1043, 1181, 1202
MspR9I CCNGG 1 cut(s) 750
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 280
NciI CCSGG 1 cut(s) 750
NdeII GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
NlaIII CATG 5 cut(s) 322, 388, 466, 544, 1037
NlaIV GGNNCC 4 cut(s) 150, 470, 548, 1074
NmuCI GTSAC 1 cut(s) 231
NruI TCGCGA 1 cut(s) 54
NspV TTCGAA 2 cut(s) 677, 1118
PaeR7I CTCGAG 1 cut(s) 909
PcsI WCGNNNNNNNCGW 5 cut(s) 149, 204, 578, 1035, 1202
PdmI GAANNNNTTC 1 cut(s) 82
PinAI ACCGGT 1 cut(s) 1042
PkrI GCNGC 5 cut(s) 10, 276, 641, 938, 1054
PleI GAGTC 2 cut(s) 563, 1147
PpsI GAGTC 2 cut(s) 563, 1147
Psp1406I AACGTT 4 cut(s) 307, 373, 451, 529
PspN4I GGNNCC 4 cut(s) 150, 470, 548, 1074
PspOMI GGGCCC 2 cut(s) 468, 546
PspPI GGNCC 5 cut(s) 406, 468, 469, 546, 547
PspXI VCTCGAGB 1 cut(s) 909
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 148
RruI TCGCGA 1 cut(s) 54
RsaI GTAC 3 cut(s) 15, 587, 703
RsaNI GTAC 3 cut(s) 14, 586, 702
RseI CAYNNNNRTG 1 cut(s) 821
SaqAI TTAA 4 cut(s) 666, 1103, 1242, 1270
SatI GCNGC 5 cut(s) 9, 275, 640, 937, 1053
Sau3AI GATC 7 cut(s) 148, 771, 776, 830, 900, 1089, 1206
Sau96I GGNCC 5 cut(s) 406, 468, 469, 546, 547
ScaI AGTACT 1 cut(s) 15
SchI GAGTC 2 cut(s) 563, 1148
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 3 cut(s) 52, 472, 550
SfaNI GCATC 2 cut(s) 111, 696
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 909
SfuI TTCGAA 2 cut(s) 677, 1118
SinI GGWCC 1 cut(s) 406
SlaI CTCGAG 1 cut(s) 909
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 2 cut(s) 909, 1260
SmoI CTYRAG 2 cut(s) 909, 1260
Sse9I AATT 2 cut(s) 926, 1237
SsiI CCGC 9 cut(s) 322, 388, 466, 544, 642, 906, 936, 960, 1052
SspMI CTAG 3 cut(s) 101, 240, 615
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 5 cut(s) 853, 865, 898, 996, 1218
TaiI ACGT 5 cut(s) 310, 376, 454, 532, 1199
TaqI TCGA 8 cut(s) 143, 207, 677, 910, 930, 1065, 1118, 1162
TasI AATT 2 cut(s) 926, 1237
TatI WGTACW 2 cut(s) 13, 701
TauI GCSGC 2 cut(s) 939, 1055
Tru1I TTAA 4 cut(s) 666, 1103, 1242, 1270
Tru9I TTAA 4 cut(s) 666, 1103, 1242, 1270
TscAI CASTG 5 cut(s) 285, 439, 517, 903, 1155
TseFI GTSAC 1 cut(s) 231
TseI GCWGC 3 cut(s) 8, 274, 639
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 2 cut(s) 652, 1176
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 5 cut(s) 285, 439, 517, 903, 1155
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 2 cut(s) 926, 1237
XhoI CTCGAG 1 cut(s) 909
XmiI GTMKAC 1 cut(s) 611
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 3 cut(s) 101, 240, 615
ZraI GACGTC 1 cut(s) 1197
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.