Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Reverse (-)

6540027 .. 6541948

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G120700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATTATCCAGTTTCATTTGAAATGAGTGAGTGCTTTTCTCTTGGAGATCTAGAAAAGCAGATTTCTGTAGATCCAATTTCACTGAAAGAATCATCTCACAGAGAAGTGATTGTTGACCCAGTGGTGGTGAAGCCTGTTGTTACTGCTCCCCCTGTTGTGACAGCTCCAAAAGCCAATGTACTTGACCAACTGCCACCCCTACTGCCTGCAAAGCCAAAATTCTTAAGCTTCAGTCTCCCGAACTCAGCAACCTCCTCGCCGCGGTTGAAGAAGAAATGGAAAGATGAAAGCCTAGCATCTCCCCGGCAGCAAATGGAGAATCTGACCCACTTGCAACAAGAAATTCAATTTAGGAGGAGCAAGTCATGTGGTCAAGGAAGACCATATGCCCCTTCAGATGACTTTGATCTTTGGCTGATCCAACCAAATGCCACTGAAAAGGTCACCACGCATTACAGCAGCCTCCCTAGAACTGAGCCCCACAAAGTTGCTCATAAAAATGGCAAGAAAATGGACCCATGTGATGATAAGTTCACATGTGGAGCCCTGTGCTTGTTCATTCCAGGCTTTGGCAAGGCAAAGCCAGTGAGAGCAAGGAAGGTAGAACCTGATGAGCTGGGAAATGTCATCTCCAGGACAGTTTCCTTGGAAAAATTTGAATGTGGCTCTTGGGCATCAGCTATGATCAATGAGCATGATGATGACTCTGTTAGTCACTACTTTGATCTTCCACTGGAGCTAATACGAAGCAGCATCAACGACACAGATTCACCAATTTCTACATCTTTTGTGTTTGACACTGATAGAAAAGGAGTTCTGAAGAATGGCTCCTCAAGAACACAAGGCCGGAAATCACATGAAGCCTCACGCCATGTTCGGTTTTCGACATCATCGTCTCCTACATCACCGACCGTTTGCGTTACACCTCGACTGCGCAAGGCTAGGAATGATTTCAAAGCTTTCTTAGAAGCACAGAGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.56

Weight (kDa)

8.74

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	895
Acc16I	TGCGCA	1 cut(s)	938
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccII	CGCG	1 cut(s)	265
AciI	CCGC	2 cut(s)	263, 265
AclWI	GGATC	2 cut(s)	68, 415
AcsI	RAATTY	3 cut(s)	221, 345, 656
AcuI	CTGAAG	3 cut(s)	217, 381, 842
AfaI	GTAC	2 cut(s)	183, 982
AfiI	CCNNNNNNNGG	3 cut(s)	127, 264, 572
AflII	CTTAAG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	5 cut(s)	23, 271, 350, 662, 958
AjnI	CCWGG	2 cut(s)	565, 635
AluBI	AGCT	6 cut(s)	167, 231, 619, 683, 742, 962
AluI	AGCT	6 cut(s)	167, 231, 619, 683, 742, 962
Alw26I	GTCTC	2 cut(s)	242, 903
AlwI	GGATC	2 cut(s)	68, 415
AoxI	GGCC	1 cut(s)	847
ApeKI	GCWGC	3 cut(s)	310, 462, 753
ApoI	RAATTY	3 cut(s)	221, 345, 656
Asp700I	GAANNNNTTC	1 cut(s)	953
AspLEI	GCGC	1 cut(s)	939
AspS9I	GGNCC	1 cut(s)	517
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	4 cut(s)	142, 439, 765, 900
AvaII	GGWCC	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	483, 550
BbsI	GAAGAC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	322, 474, 765
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	2 cut(s)	567, 637
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	242, 903
BfaI	CTAG	4 cut(s)	53, 296, 471, 945
BfmI	CTRYAG	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	226
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	4 cut(s)	263, 311, 463, 754
BlsI	GCNGC	4 cut(s)	264, 312, 464, 755
Bme1390I	CCNGG	3 cut(s)	307, 567, 637
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	3 cut(s)	519, 547, 832
BmrFI	CCNGG	3 cut(s)	307, 567, 637
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	308, 686, 765
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	388
BpmI	CTGGAG	2 cut(s)	619, 758
BpuEI	CTTGAG	1 cut(s)	820
BpuMI	CCSGG	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	263, 305, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 264, 572
Bse1I	ACTGG	4 cut(s)	11, 122, 587, 741
BseBI	CCWGG	2 cut(s)	567, 637
BseDI	CCNNGG	3 cut(s)	263, 305, 648
BseLI	CCNNNNNNNGG	3 cut(s)	127, 264, 572
BseMII	CTCAG	2 cut(s)	261, 468
BseNI	ACTGG	4 cut(s)	11, 122, 587, 741
BseRI	GAGGAG	3 cut(s)	247, 373, 823
BseXI	GCAGC	3 cut(s)	322, 474, 765
BseYI	CCCAGC	1 cut(s)	619
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	915
BshFI	GGCC	1 cut(s)	849
BsiEI	CGRYCG	1 cut(s)	915
BsiSI	CCGG	2 cut(s)	307, 850
BslI	CCNNNNNNNGG	3 cut(s)	127, 264, 572
BsmAI	GTCTC	2 cut(s)	242, 903
BsmBI	CGTCTC	1 cut(s)	903
BsnI	GGCC	1 cut(s)	849
Bsp1286I	GDGCHC	2 cut(s)	483, 550
Bsp143I	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
BspACI	CCGC	2 cut(s)	263, 265
BspANI	GGCC	1 cut(s)	849
BspCNI	CTCAG	2 cut(s)	260, 469
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	519, 547, 832
BspPI	GGATC	2 cut(s)	68, 415
BspTI	CTTAAG	1 cut(s)	226
BsrI	ACTGG	4 cut(s)	11, 122, 587, 741
BssECI	CCNNGG	3 cut(s)	263, 305, 648
BssMI	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	567, 637
Bst4CI	ACNGT	2 cut(s)	643, 916
BstAFI	CTTAAG	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	247, 477, 967
BstDSI	CCRYGG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	939
BstKTI	GATC	6 cut(s)	52, 76, 412, 423, 690, 730
BstMAI	GTCTC	2 cut(s)	242, 903
BstMBI	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
BstMCI	CGRYCG	1 cut(s)	915
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 214
BstNI	CCWGG	2 cut(s)	567, 637
BstNSI	RCATGY	1 cut(s)	543
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	3 cut(s)	305, 565, 635
BstSFI	CTRYAG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	322, 474, 765
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	2 cut(s)	49, 73
BstYI	RGATCY	2 cut(s)	49, 73
BsuRI	GGCC	1 cut(s)	849
BtgI	CCRYGG	1 cut(s)	263
BtsIMutI	CAGTG	6 cut(s)	83, 129, 435, 594, 734, 801
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	939
Cfr13I	GGNCC	1 cut(s)	517
Cfr42I	CCGCGG	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	182, 981
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	6 cut(s)	369, 522, 540, 698, 860, 875
CviQI	GTAC	2 cut(s)	182, 981
DdeI	CTNAG	3 cut(s)	247, 477, 967
DpnI	GATC	6 cut(s)	51, 75, 411, 422, 689, 729
DpnII	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
DrdI	GACNNNNNNGTC	1 cut(s)	895
DseDI	GACNNNNNNGTC	1 cut(s)	895
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	2 cut(s)	483, 550
Eco47I	GGWCC	1 cut(s)	517
Eco57I	CTGAAG	3 cut(s)	217, 381, 842
Eco91I	GGTNACC	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	565, 635
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	2 cut(s)	483, 550
ErhI	CCWWGG	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	903
FaeI	CATG	6 cut(s)	372, 525, 543, 701, 863, 878
FatI	CATG	6 cut(s)	368, 521, 539, 697, 859, 874
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	4 cut(s)	263, 311, 463, 754
FriOI	GRGCYC	2 cut(s)	483, 550
Fsp4HI	GCNGC	4 cut(s)	263, 311, 463, 754
FspBI	CTAG	4 cut(s)	53, 296, 471, 945
FspI	TGCGCA	1 cut(s)	938
GlaI	GCGC	1 cut(s)	938
GluI	GCNGC	4 cut(s)	263, 311, 463, 754
GsaI	CCCAGC	1 cut(s)	623
GsuI	CTGGAG	2 cut(s)	619, 758
HaeIII	GGCC	1 cut(s)	849
HapII	CCGG	2 cut(s)	307, 850
HhaI	GCGC	1 cut(s)	939
Hin1II	CATG	6 cut(s)	372, 525, 543, 701, 863, 878
Hin6I	GCGC	1 cut(s)	937
HinP1I	GCGC	1 cut(s)	937
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	229, 960
HinfI	GANTC	4 cut(s)	92, 322, 707, 770
HpaII	CCGG	2 cut(s)	307, 850
HphI	GGTGA	4 cut(s)	142, 439, 765, 900
Hpy166II	GTNNAC	2 cut(s)	118, 537
Hpy188I	TCNGA	3 cut(s)	327, 400, 822
Hpy188III	TCNNGA	3 cut(s)	53, 241, 837
Hpy8I	GTNNAC	2 cut(s)	118, 537
HpyAV	CCTTC	2 cut(s)	405, 595
HpyCH4III	ACNGT	2 cut(s)	643, 916
HpyCH4V	TGCA	2 cut(s)	212, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 214
HpyF3I	CTNAG	3 cut(s)	247, 477, 967
Hsp92II	CATG	6 cut(s)	372, 525, 543, 701, 863, 878
HspAI	GCGC	1 cut(s)	937
Ksp22I	TGATCA	1 cut(s)	687
KspI	CCGCGG	1 cut(s)	266
Kzo9I	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
LmnI	GCTCC	6 cut(s)	154, 172, 360, 545, 739, 836
Lsp1109I	GCAGC	3 cut(s)	322, 474, 765
LweI	GCATC	3 cut(s)	308, 686, 765
MaeI	CTAG	4 cut(s)	53, 296, 471, 945
MaeIII	GTNAC	5 cut(s)	142, 160, 445, 716, 922
MalI	GATC	6 cut(s)	51, 75, 411, 422, 689, 729
MboI	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
MboII	GAAGA	5 cut(s)	283, 286, 393, 722, 835
MflI	RGATCY	2 cut(s)	49, 73
MhlI	GDGCHC	2 cut(s)	483, 550
MluCI	AATT	6 cut(s)	78, 221, 345, 350, 656, 777
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	7 cut(s)	265, 268, 351, 476, 844, 877, 939
MroXI	GAANNNNTTC	1 cut(s)	953
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	501, 702
MspA1I	CMGCKG	1 cut(s)	265
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	2 cut(s)	307, 850
MspR9I	CCNGG	3 cut(s)	307, 567, 637
MvaI	CCWGG	2 cut(s)	567, 637
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	173, 214
NciI	CCSGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
NlaIII	CATG	6 cut(s)	372, 525, 543, 701, 863, 878
NlaIV	GGNNCC	3 cut(s)	519, 547, 832
NmuCI	GTSAC	3 cut(s)	160, 445, 716
NsbI	TGCGCA	1 cut(s)	938
NspI	RCATGY	1 cut(s)	543
PciI	ACATGT	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	893
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	3 cut(s)	92, 322, 770
PflMI	CCANNNNNTGG	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	264, 312, 464, 755
PleI	GAGTC	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	701
PscI	ACATGT	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	565, 635
PspEI	GGTNACC	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	2 cut(s)	565, 635
PspN4I	GGNNCC	3 cut(s)	519, 547, 832
PspPI	GGNCC	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	49, 73
RsaI	GTAC	2 cut(s)	183, 982
RsaNI	GTAC	2 cut(s)	182, 981
RseI	CAYNNNNRTG	2 cut(s)	501, 702
SacII	CCGCGG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	4 cut(s)	263, 311, 463, 754
Sau3AI	GATC	6 cut(s)	49, 73, 409, 420, 687, 727
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	3 cut(s)	307, 567, 637
SduI	GDGCHC	2 cut(s)	483, 550
SfaNI	GCATC	3 cut(s)	308, 686, 765
SfcI	CTRYAG	1 cut(s)	69
Sfr303I	CCGCGG	1 cut(s)	266
SgrBI	CCGCGG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	2 cut(s)	501, 702
SmlI	CTYRAG	2 cut(s)	226, 835
SmoI	CTYRAG	2 cut(s)	226, 835
Sse9I	AATT	6 cut(s)	78, 221, 345, 350, 656, 777
SsiI	CCGC	2 cut(s)	263, 265
SspMI	CTAG	4 cut(s)	53, 296, 471, 945
StyD4I	CCNGG	3 cut(s)	305, 565, 635
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	643, 916
TaqI	TCGA	2 cut(s)	887, 931
TasI	AATT	6 cut(s)	78, 221, 345, 350, 656, 777
TatI	WGTACW	2 cut(s)	181, 980
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	3 cut(s)	92, 322, 770
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	6 cut(s)	90, 129, 442, 594, 741, 808
TseFI	GTSAC	3 cut(s)	160, 445, 716
TseI	GCWGC	3 cut(s)	310, 462, 753
Tsp45I	GTSAC	3 cut(s)	160, 445, 716
TspDTI	ATGAA	4 cut(s)	6, 303, 550, 876
TspRI	CASTG	6 cut(s)	90, 129, 442, 594, 741, 808
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	3 cut(s)	221, 345, 656
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	4 cut(s)	53, 296, 471, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.