Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

11211244 .. 11213696

Gene Structure 2453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCAGATCTCATGTCTCCCAATTTCGATTCCTTCGATCACTCCTCGAACCTCAATTCCACTCTTACCATCACTCTCCTCAAATCCTCGCCGCATTTTCAACCTCACTTCACTTCAGAGCCCAAATCACTGTTTCTTCAAAAGATTACATAAATCTCAGACTGGTTTCAGCAATCCAGTTTTGGCTGCCATGAGAAGAGAAGAAGATGTTGAAGTCGATGATTCGTTTTATATGAGAAAGTGTGTGGAGCTAGCAAAAAGAGCAATTGGGTGTACAAGTCCTAATCCTATGGTAGGTTGTGTCATTGTCAAAGATGGTGACATTGTTGGCCAAGGGTTTCATCCCAAAGCTGGTCAGCCTCATGCTGAGGTGTTTGCTCTTAGAGATGCTGGAGAGTTAGCTGAGAATGCTACTGCTTATGTTAGTTTGGAACCATGTAATCATTACGGAAGAACACCGCCGTGTACAGAAGCATTGATTAAGGCTAAGGTGAGAAGAGTTGTTATTGGGATGGTTGATCCGAATCCAATTGTTTTTTCTTCGGGTATTAGTCGGTTGAAAGATGCTGGAATCGATGTTACTGTGAGTGTTGAAGAAGAGTTATGCAAGAAGATGAATGAGGGATTCATCCATCGAATGTTAACAGGGAAGCCTTTTCTCGCCCTCAGGTATTCTATGTCTGTCAATGGTTGTTTGCTAGACAAGATTGGGCAAGGGGCTTCGGATAGTGGTGGATACTACTCGAAGCTATTGCAGGAATATGATGCGATAATACTTTCTTCCTCGTTATCGGATGAACTCTCGAGCATTTCTTCACAAGAAGCTATTAATGTTTCGATCCAACCTATTCAGATCATAGTAGCTAGCAATGCACAACAGTCTCATATCCTTGCTTCTTCCCACACTGTGGAAGAATCGGGTCCAAAAGTTGTAGTTTTCACCGCAAAGGAATCGGTTGCAGAATCCGGAATCAGTAGTAGCGGGGTCGAAACCGTAGTATTGGAAAAGATAAACTTGGATTCCATTTTGGATTATTGTTACAACCGTGGACTATGCAGTGTCTTGTTAGATTTGAGGGGGAACGTCAAAGACCTTGAAGTTCTTCTGAGAGATGGATTTGAGCAGAAACTATTGCAGAAAGTAATTATTGAGGTCTTGCCGGAATGGAGCACAAAAGATGAGAGACAGATCGCGTCGATGAAGTGGTTAGAATCAAAGCATGTGAAAGATTTGCAGTCTAAGCAATTAGGTGGAAGCGTTTTGCTAGAGGGCTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

426

Amino Acids

46.67

Weight (kDa)

6.04

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	73 - 171	4.5e-21	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	73 - 183	1.7e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccII	CGCG	1 cut(s)	1193
AccIII	TCCGGA	1 cut(s)	965
AciI	CCGC	4 cut(s)	91, 458, 942, 981
AclWI	GGATC	2 cut(s)	512, 832
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	907
AfaI	GTAC	2 cut(s)	274, 466
AfiI	CCNNNNNNNGG	3 cut(s)	293, 350, 907
AgsI	TTSAA	6 cut(s)	100, 139, 212, 559, 593, 1097
AjuI	GAANNNNNNNTTGG	2 cut(s)	520, 552
AleI	CACNNNNGTG	1 cut(s)	460
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	250, 350, 401, 748, 824, 863
AluI	AGCT	6 cut(s)	250, 350, 401, 748, 824, 863
Alw21I	GWGCWC	1 cut(s)	1172
Alw26I	GTCTC	3 cut(s)	20, 885, 1177
AlwI	GGATC	2 cut(s)	512, 832
Ama87I	CYCGRG	1 cut(s)	802
Aor13HI	TCCGGA	1 cut(s)	965
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	185
AseI	ATTAAT	1 cut(s)	828
Asp700I	GAANNNNTTC	1 cut(s)	1101
AspS9I	GGNCC	1 cut(s)	920
AsuHPI	GGTGA	3 cut(s)	329, 502, 931
AsuNHI	GCTAGC	2 cut(s)	250, 863
AvaI	CYCGRG	1 cut(s)	802
AvaII	GGWCC	1 cut(s)	920
AxyI	CCTNAGG	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	1172
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	5 cut(s)	76, 308, 505, 639, 1106
BceAI	ACGGC	1 cut(s)	445
BcgI	CGANNNNNNTGC	4 cut(s)	733, 767, 933, 967
BciVI	GTATCC	1 cut(s)	728
BcoDI	GTCTC	3 cut(s)	20, 885, 1177
BfaI	CTAG	4 cut(s)	251, 698, 864, 1265
BfuI	GTATCC	1 cut(s)	728
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	91, 186
BlsI	GCNGC	2 cut(s)	92, 187
Bme18I	GGWCC	1 cut(s)	920
BmeT110I	CYCGRG	1 cut(s)	802
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	2 cut(s)	432, 921
BmsI	GCATC	3 cut(s)	376, 553, 754
BmtI	GCTAGC	2 cut(s)	254, 867
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	2 cut(s)	366, 486
Bsa29I	ATCGAT	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	331, 1045
BsaWI	WCCGGW	1 cut(s)	965
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 350, 907
Bse1I	ACTGG	2 cut(s)	166, 176
Bse21I	CCTNAGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	874
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	965
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	331, 1045
BseGI	GGATG	4 cut(s)	340, 516, 627, 799
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	293, 350, 907
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	5 cut(s)	170, 357, 393, 679, 1097
BseNI	ACTGG	2 cut(s)	166, 176
BseRI	GAGGAG	2 cut(s)	33, 67
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	1193
BshFI	GGCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	1172
BsiHKCI	CYCGRG	1 cut(s)	802
BsiSI	CCGG	2 cut(s)	966, 1160
BslI	CCNNNNNNNGG	3 cut(s)	293, 350, 907
BsmAI	GTCTC	3 cut(s)	20, 885, 1177
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	802
Bsp1286I	GDGCHC	2 cut(s)	122, 1172
Bsp13I	TCCGGA	1 cut(s)	965
Bsp1407I	TGTACA	2 cut(s)	272, 464
Bsp143I	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
BspACI	CCGC	4 cut(s)	91, 458, 942, 981
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	5 cut(s)	169, 358, 394, 678, 1098
BspDI	ATCGAT	1 cut(s)	573
BspEI	TCCGGA	1 cut(s)	965
BspFNI	CGCG	1 cut(s)	1193
BspLI	GGNNCC	2 cut(s)	432, 921
BspOI	GCTAGC	2 cut(s)	254, 867
BspPI	GGATC	2 cut(s)	512, 832
BsrDI	GCAATG	1 cut(s)	874
BsrGI	TGTACA	2 cut(s)	272, 464
BsrI	ACTGG	2 cut(s)	166, 176
BssECI	CCNNGG	2 cut(s)	331, 1045
BssMI	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	6 cut(s)	131, 583, 879, 907, 994, 1046
Bst6I	CTCTTC	3 cut(s)	190, 490, 591
BstAUI	TGTACA	2 cut(s)	272, 464
BstC8I	GCNNGC	2 cut(s)	252, 865
BstDEI	CTNAG	8 cut(s)	156, 366, 380, 402, 486, 665, 1106, 1239
BstDSI	CCRYGG	1 cut(s)	1045
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	340, 516, 627, 799
BstFNI	CGCG	1 cut(s)	1193
BstKTI	GATC	6 cut(s)	9, 39, 520, 840, 855, 1191
BstMAI	GTCTC	3 cut(s)	20, 885, 1177
BstMBI	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 407, 869, 1240
BstNSI	RCATGY	1 cut(s)	1223
BstUI	CGCG	1 cut(s)	1193
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	573
Bsu36I	CCTNAGG	1 cut(s)	665
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	1045
BtsCI	GGATG	4 cut(s)	340, 516, 627, 799
BtsI	GCAGTG	1 cut(s)	1063
BtsIMutI	CAGTG	3 cut(s)	127, 903, 1063
Cac8I	GCNNGC	2 cut(s)	252, 865
Cfr13I	GGNCC	1 cut(s)	920
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	1182
Csp6I	GTAC	2 cut(s)	273, 465
CviAII	CATG	5 cut(s)	12, 190, 362, 435, 1220
CviQI	GTAC	2 cut(s)	273, 465
DdeI	CTNAG	8 cut(s)	156, 366, 380, 402, 486, 665, 1106, 1239
DpnI	GATC	6 cut(s)	8, 38, 519, 839, 854, 1190
DpnII	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
DraIII	CACNNNGTG	1 cut(s)	907
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	3 cut(s)	190, 490, 591
EarI	CTCTTC	3 cut(s)	190, 490, 591
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	802
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	5 cut(s)	15, 193, 365, 438, 1223
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FatI	CATG	5 cut(s)	11, 189, 361, 434, 1219
FauI	CCCGC	1 cut(s)	974
Fnu4HI	GCNGC	2 cut(s)	91, 186
FokI	GGATG	4 cut(s)	327, 523, 614, 806
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	91, 186
FspBI	CTAG	4 cut(s)	251, 698, 864, 1265
GluI	GCNGC	2 cut(s)	91, 186
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	966, 1160
HgaI	GACGC	1 cut(s)	1182
Hin1II	CATG	5 cut(s)	15, 193, 365, 438, 1223
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	2 cut(s)	966, 1160
HphI	GGTGA	3 cut(s)	329, 502, 931
Hpy166II	GTNNAC	4 cut(s)	273, 465, 642, 1049
Hpy188I	TCNGA	7 cut(s)	117, 159, 522, 724, 793, 852, 1107
Hpy188III	TCNNGA	2 cut(s)	802, 966
Hpy8I	GTNNAC	4 cut(s)	273, 465, 642, 1049
Hpy99I	CGWCG	1 cut(s)	1198
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	6 cut(s)	131, 583, 879, 907, 994, 1046
HpyCH4IV	ACGT	1 cut(s)	1083
HpyCH4V	TGCA	8 cut(s)	4, 606, 754, 872, 959, 1056, 1135, 1234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 407, 869, 1240
HpyF3I	CTNAG	8 cut(s)	156, 366, 380, 402, 486, 665, 1106, 1239
HpySE526I	ACGT	1 cut(s)	1083
Hsp92II	CATG	5 cut(s)	15, 193, 365, 438, 1223
Kpn2I	TCCGGA	1 cut(s)	965
KspAI	GTTAAC	1 cut(s)	642
Kzo9I	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
LmnI	GCTCC	2 cut(s)	247, 1167
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	3 cut(s)	376, 553, 754
MaeI	CTAG	4 cut(s)	251, 698, 864, 1265
MaeII	ACGT	1 cut(s)	1083
MaeIII	GTNAC	3 cut(s)	317, 577, 1037
MalI	GATC	6 cut(s)	8, 38, 519, 839, 854, 1190
MboI	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
MfeI	CAATTG	2 cut(s)	264, 528
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	122, 1172
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	6 cut(s)	21, 54, 264, 528, 1143, 1244
MluNI	TGGCCA	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	865
Mox20I	TGGCCA	1 cut(s)	330
MroI	TCCGGA	1 cut(s)	965
MroXI	GAANNNNTTC	1 cut(s)	1101
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	3 cut(s)	480, 641, 828
MslI	CAYNNNNRTG	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	330
MspI	CCGG	2 cut(s)	966, 1160
MunI	CAATTG	2 cut(s)	264, 528
Mva1269I	GAATGC	1 cut(s)	412
MvnI	CGCG	1 cut(s)	1193
MwoI	GCNNNNNNNGC	4 cut(s)	260, 407, 869, 1240
NdeII	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
NheI	GCTAGC	2 cut(s)	250, 863
NlaIII	CATG	5 cut(s)	15, 193, 365, 438, 1223
NlaIV	GGNNCC	2 cut(s)	432, 921
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	1223
OliI	CACNNNNGTG	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	1101
PflMI	CCANNNNNTGG	1 cut(s)	907
PkrI	GCNGC	2 cut(s)	92, 187
PshBI	ATTAAT	1 cut(s)	828
PspN4I	GGNNCC	2 cut(s)	432, 921
PspPI	GGNCC	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	2 cut(s)	274, 466
RsaNI	GTAC	2 cut(s)	273, 465
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	3 cut(s)	480, 641, 828
SatI	GCNGC	2 cut(s)	91, 186
Sau3AI	GATC	6 cut(s)	6, 36, 517, 837, 852, 1188
Sau96I	GGNCC	1 cut(s)	920
SduI	GDGCHC	2 cut(s)	122, 1172
SfaNI	GCATC	3 cut(s)	376, 553, 754
Sfr274I	CTCGAG	1 cut(s)	802
SinI	GGWCC	1 cut(s)	920
SlaI	CTCGAG	1 cut(s)	802
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
Sse9I	AATT	6 cut(s)	21, 54, 264, 528, 1143, 1244
SsiI	CCGC	4 cut(s)	91, 458, 942, 981
SspMI	CTAG	4 cut(s)	251, 698, 864, 1265
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	6 cut(s)	131, 583, 879, 907, 994, 1046
TaiI	ACGT	1 cut(s)	1086
TasI	AATT	6 cut(s)	21, 54, 264, 528, 1143, 1244
TatI	WGTACW	2 cut(s)	272, 464
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	3 cut(s)	480, 641, 828
Tru9I	TTAA	3 cut(s)	480, 641, 828
TscAI	CASTG	3 cut(s)	134, 910, 1063
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	5 cut(s)	329, 616, 629, 810, 1214
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	3 cut(s)	134, 910, 1063
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	920
VspI	ATTAAT	1 cut(s)	828
XagI	CCTNNNNNAGG	1 cut(s)	291
XceI	RCATGY	1 cut(s)	1223
XhoI	CTCGAG	1 cut(s)	802
XmnI	GAANNNNTTC	1 cut(s)	1101
XspI	CTAG	4 cut(s)	251, 698, 864, 1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.