Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

8330146 .. 8337736

Gene Structure 7591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08470.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCAAGTTCAACGACTTTCACTCCCAAGTCTCACTCTCTCTCCACCCAAGGTCCCACAATCAAAGCAACTCTCCACCAAGCTTTTGAGGTTGAAACCACATTCCAAATCTTATTGTTGCAATTCCTCTAAAGTGATGTTCAAGTCACCAACCCGTGTAAGAAACCATGGTGGTTCGGTTGGGTTCAGGTGTGAAGTAGCACAACAGGAAGATAGAGATGATGGGTTTTATATGAGGAGGTGTGTGGAGCTTGCTAGAAAGGCTATTGGGCGTACTAGCCCTAATCCTATGGTGGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCTAAAGCTGGCCAACCACATGCTGAGGTGTTTGCTCTGAGAGATGCTGGAGAATTGGCTGAAAATGCAACTGCTTATGTGAGCTTGGAGCCATGTAATCACTATGGGAGAACTCCACCATGCACTGAAGCCCTGATTAAAGCCAAAGTTAAAAAGGTTGTGGTTGGAATGGTGGATCCAAATCCAATTGTAGCATCAAAGGGGTTGGATAGGTTAAGAGATGCAGGTATTGACGTTATAACAGGTGTAGAAGAAAAGTTATGCAAGAGACTAAATGAGGCTTATATCCATCATATGCTAACTGGGAATCCATTCATCAGTGTCAGATACTCTATCTCAGTCAATGGACACTTTCTAGATCAGCTTGGGGAAGGAGTTGCTGAGCTTGGTGGTTACTACTCTGAATTGTTACAAGAATATGATGCGATTCTACTTACGTCTGCCACAGTAACTGAGAACAACTCCCTTCCAGCATCACAAGAAGCCGGTGCTAATCAACCGCTCCGGATTATAATAGCGAGTGGTGGTTCTCCAATCCATATCCCAGTGAACATGGAATCAAGTGGTAAGCTAATAATCTTTGCAGACAACAACACAACAATGGATCTAGAAAGCACTCAAACAGGTATTGAAACTGTGGTGTTGGATCAGATAAATTTGAATGCTATTACGGAATACTGCAAATCTCAAGGATTCTGTAGTGTTTTGTTGGATTTAAGGGGAAATATAGGTGATTTTGAAAAGGTTTTCCAAGATGGTACTGAGCAGAAGTTACAAAAACTGGTGATTGAAGTATTGCCCATCTGGGATGAAGATGGGGGTGGGAATTTCCCTATTGCATTGAAGAGTCTAAGTAAGAGAGTAGGAGTAATGAATTTGCGGGCTAAAATTTCAAGTCAGAGTCAGAGTGTTGTGCTTGAAGGATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

425

Amino Acids

46.23

Weight (kDa)

7.09

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	74 - 171	8e-21	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	76 - 176	4e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	581, 854
Acc36I	ACCTGC	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	844
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	2 cut(s)	842, 1222
AclWI	GGATC	4 cut(s)	512, 525, 954, 996
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	4 cut(s)	997, 1168, 1216, 1230
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	274, 1102
AfiI	CCNNNNNNNGG	2 cut(s)	293, 350
AluBI	AGCT	7 cut(s)	82, 250, 350, 426, 706, 727, 913
AluI	AGCT	7 cut(s)	82, 250, 350, 426, 706, 727, 913
Alw26I	GTCTC	2 cut(s)	35, 604
AlwI	GGATC	4 cut(s)	512, 525, 954, 996
AlwNI	CAGNNNCTG	1 cut(s)	794
Aor13HI	TCCGGA	1 cut(s)	846
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	4 cut(s)	997, 1168, 1216, 1230
Asp700I	GAANNNNTTC	2 cut(s)	336, 653
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	5 cut(s)	138, 332, 341, 1085, 1138
AvaII	GGWCC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	366
BccI	CCATC	6 cut(s)	215, 308, 639, 1091, 1151, 1151
BciVI	GTATCC	1 cut(s)	1259
BcoDI	GTCTC	2 cut(s)	35, 604
BfaI	CTAG	4 cut(s)	255, 276, 698, 950
BfmI	CTRYAG	1 cut(s)	1039
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	1259
BlpI	GCTNAGC	1 cut(s)	723
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	3 cut(s)	54, 432, 519
BmrI	ACTGGG	2 cut(s)	654, 881
BmsI	GCATC	5 cut(s)	376, 545, 553, 754, 824
BmuI	ACTGGG	2 cut(s)	654, 881
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	1014
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	48, 166
BsaWI	WCCGGW	1 cut(s)	846
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 25, 36, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 350
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	3 cut(s)	649, 887, 1128
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	48, 166
BseGI	GGATG	2 cut(s)	319, 1156
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	293, 350
BseMII	CTCAG	6 cut(s)	357, 371, 693, 714, 786, 1095
BseNI	ACTGG	3 cut(s)	649, 887, 1128
BseRI	GAGGAG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	828, 847
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	293, 350
BsmAI	GTCTC	2 cut(s)	35, 604
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	846
Bsp143I	GATC	4 cut(s)	517, 700, 946, 988
Bsp1720I	GCTNAGC	1 cut(s)	723
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	842, 1222
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	6 cut(s)	358, 372, 692, 715, 787, 1096
BspEI	TCCGGA	1 cut(s)	846
BspLI	GGNNCC	3 cut(s)	54, 432, 519
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	4 cut(s)	512, 525, 954, 996
BsrBI	CCGCTC	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	3 cut(s)	649, 887, 1128
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	48, 166
BssMI	GATC	4 cut(s)	517, 700, 946, 988
BssT1I	CCWWGG	2 cut(s)	48, 166
Bst4CI	ACNGT	2 cut(s)	790, 979
Bst6I	CTCTTC	1 cut(s)	1181
BstC8I	GCNNGC	3 cut(s)	252, 352, 1224
BstDEI	CTNAG	7 cut(s)	366, 380, 679, 723, 795, 1104, 1193
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	319, 1156
BstKTI	GATC	4 cut(s)	520, 703, 949, 991
BstMAI	GTCTC	2 cut(s)	35, 604
BstMBI	GATC	4 cut(s)	517, 700, 946, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 407
BstNSI	RCATGY	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	1039
BstX2I	RGATCY	2 cut(s)	517, 946
BstYI	RGATCY	2 cut(s)	517, 946
BsuI	GTATCC	1 cut(s)	1259
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	319, 1156
BtsIMutI	CAGTG	3 cut(s)	465, 667, 894
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	3 cut(s)	252, 352, 1224
CaiI	CAGNNNCTG	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	273, 1101
CviAII	CATG	5 cut(s)	167, 362, 435, 462, 895
CviQI	GTAC	2 cut(s)	273, 1101
DdeI	CTNAG	7 cut(s)	366, 380, 679, 723, 795, 1104, 1193
DpnI	GATC	4 cut(s)	519, 702, 948, 990
DpnII	GATC	4 cut(s)	517, 700, 946, 988
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	1181
EarI	CTCTTC	1 cut(s)	1181
Eco130I	CCWWGG	2 cut(s)	48, 166
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	48, 166
ErhI	CCWWGG	2 cut(s)	48, 166
FaeI	CATG	5 cut(s)	170, 365, 438, 465, 898
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	166, 361, 434, 461, 894
FauI	CCCGC	1 cut(s)	1215
FauNDI	CATATG	1 cut(s)	636
FokI	GGATG	2 cut(s)	326, 1163
FspBI	CTAG	4 cut(s)	255, 276, 698, 950
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	828, 847
Hin1II	CATG	5 cut(s)	170, 365, 438, 465, 898
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	6 cut(s)	649, 769, 899, 1035, 1189, 1243
HpaII	CCGG	2 cut(s)	828, 847
HphI	GGTGA	5 cut(s)	138, 332, 341, 1085, 1138
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	6 cut(s)	381, 668, 745, 993, 1242, 1248
Hpy188III	TCNNGA	3 cut(s)	698, 847, 950
Hpy8I	GTNNAC	1 cut(s)	892
HpyAV	CCTTC	4 cut(s)	326, 707, 818, 1256
HpyCH4III	ACNGT	2 cut(s)	790, 979
HpyCH4IV	ACGT	2 cut(s)	576, 779
HpyCH4V	TGCA	9 cut(s)	4, 120, 410, 465, 566, 606, 926, 1023, 1181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 407
HpyF3I	CTNAG	7 cut(s)	366, 380, 679, 723, 795, 1104, 1193
HpySE526I	ACGT	2 cut(s)	576, 779
Hsp92II	CATG	5 cut(s)	170, 365, 438, 465, 898
Kpn2I	TCCGGA	1 cut(s)	846
Kzo9I	GATC	4 cut(s)	517, 700, 946, 988
LmnI	GCTCC	3 cut(s)	247, 430, 849
LweI	GCATC	5 cut(s)	376, 545, 553, 754, 824
MaeI	CTAG	4 cut(s)	255, 276, 698, 950
MaeII	ACGT	2 cut(s)	576, 779
MaeIII	GTNAC	5 cut(s)	144, 734, 750, 790, 1113
MalI	GATC	4 cut(s)	519, 702, 948, 990
MbiI	CCGCTC	1 cut(s)	844
MboI	GATC	4 cut(s)	517, 700, 946, 988
MboII	GAAGA	4 cut(s)	221, 605, 1166, 1198
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	2 cut(s)	517, 946
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	8 cut(s)	121, 395, 528, 746, 997, 1168, 1216, 1230
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	1198, 1252
MmeI	TCCRAC	4 cut(s)	487, 528, 966, 1032
MnlI	CCTC	6 cut(s)	81, 136, 228, 231, 361, 613
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	846
MroXI	GAANNNNTTC	2 cut(s)	336, 653
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	480, 492, 557, 1058
MslI	CAYNNNNRTG	1 cut(s)	941
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	2 cut(s)	828, 847
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	1009
MwoI	GCNNNNNNNGC	2 cut(s)	260, 407
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	4 cut(s)	517, 700, 946, 988
NlaIII	CATG	5 cut(s)	170, 365, 438, 465, 898
NlaIV	GGNNCC	3 cut(s)	54, 432, 519
NmuCI	GTSAC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	365
PctI	GAATGC	1 cut(s)	1009
PdmI	GAANNNNTTC	2 cut(s)	336, 653
PfeI	GAWTC	4 cut(s)	649, 769, 899, 1035
PleI	GAGTC	2 cut(s)	1197, 1251
PpsI	GAGTC	2 cut(s)	1197, 1251
PpuMI	RGGWCCY	1 cut(s)	52
PsiI	TTATAA	2 cut(s)	581, 854
Psp5II	RGGWCCY	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	54, 432, 519
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	2 cut(s)	517, 946
RsaI	GTAC	2 cut(s)	274, 1102
RsaNI	GTAC	2 cut(s)	273, 1101
RseI	CAYNNNNRTG	1 cut(s)	941
SaqAI	TTAA	4 cut(s)	480, 492, 557, 1058
Sau3AI	GATC	4 cut(s)	517, 700, 946, 988
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	2 cut(s)	1198, 1252
SfaNI	GCATC	5 cut(s)	376, 545, 553, 754, 824
SfcI	CTRYAG	1 cut(s)	1039
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	1029
SmoI	CTYRAG	1 cut(s)	1029
Sse9I	AATT	8 cut(s)	121, 395, 528, 746, 997, 1168, 1216, 1230
SsiI	CCGC	2 cut(s)	842, 1222
SspMI	CTAG	4 cut(s)	255, 276, 698, 950
StyI	CCWWGG	2 cut(s)	48, 166
TaaI	ACNGT	2 cut(s)	790, 979
TaiI	ACGT	2 cut(s)	579, 782
TasI	AATT	8 cut(s)	121, 395, 528, 746, 997, 1168, 1216, 1230
TfiI	GAWTC	4 cut(s)	649, 769, 899, 1035
Tru1I	TTAA	4 cut(s)	480, 492, 557, 1058
Tru9I	TTAA	4 cut(s)	480, 492, 557, 1058
TscAI	CASTG	3 cut(s)	472, 667, 894
TseFI	GTSAC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	3 cut(s)	646, 1167, 1229
TspGWI	ACGGA	1 cut(s)	1028
TspRI	CASTG	3 cut(s)	472, 667, 894
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	4 cut(s)	997, 1168, 1216, 1230
XbaI	TCTAGA	2 cut(s)	697, 949
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	2 cut(s)	336, 653
XspI	CTAG	4 cut(s)	255, 276, 698, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.