Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Reverse (-)

36204843 .. 36207769

Gene Structure 2927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG309900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCAAGTTCAACGGCTTTCACTCCCAAGTTATACTCTCTCTCTACCCAATGTCTCACAATCAAAGCGACTCTCCACCAAGCTTTTGACGTTCAATCCACATTCCACGTCTGGGTTTTGCAATTCAGCAAAAGTGATGTTTAAGTCACCGACAGGTGCCAGAAACTATGGTGATTTGGTTGGGGTCAGGTGTGAAGTAGCACAACAAGAAGATAGAGATGATGAGTTTTATATGAGGAGGTGTGTGGAGCTTGCAAGAAAGGCTATTGGGCATACTAGCCCCAATCCTATAGTCGGTTGCGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCTAAAGATGGCCAACCACATGCAGAGGTTTTTGCTCTGAGGGATGCTGGAGATTTGGCTGAAAATGCAACAGCTTATGTGAGCTTGGAGCCATGTAATCACTATGGGAGAACTCCACCATGCACTGAAGCCCTAATTAAAGCCAAAGTTAAAAGGGTCGTGGTCGGAATGGTGGATCCAAATCCAATTGTAGCATCGAAGGGGTTGGATAGATTAAGAGATGCAGGAATTGATGTTATAACGGGTGTAGAAGAAAAATTATGCACGAGACTAAGTGAGGCTTATATCCATCATATGCTAACTGGGAATCCTTTCGTCACTCTTAGGTACTCTATCTCAGCCAATGGACACTTTTTAGATCAGCTTGGGGAAGGAGTTACTGAGCTTGGTGGTTACTACTCTCAATTGTTACAGGAATATGATGCAATTATACTTTCTTCTGCCACAGTAACTGAGAACAACTCTCTTCCAGCATCACAAGAAGCTGGTGCTAATCAACCGCTCCGGATTATAATAGCGAGTAGTGGTTCTTCAATCCAAATCCCAGGACTGACCATGGAACCAAGCGGTAAGCTAATAATATTTGCAGACAATGAGACAACAGTAGAACTAGAAAGCACTCAAACAGGTATTGAAACTGTGGTGTTGGATCAGATAAATTTAAATGCTATTACAGAATACTGCAAATCTCAAGGATTCTGTAGTGTTTTGTTGGATTTAAGGGGAAATATGGGTGATTTTGAAAAGGTTCTCCAAGATGGTACTGAGCAGAACTTGCAAAAAATTGTGATCGAAGTATTGCCCATCTGGGATCAAAGAGGGGGCGGGGATTTCCCTATTGCATTGAAGAGTCTGAGTAAAAGAGTAGAAGTAAAGAATTTGCAGGCTAAGATTTCAAATCAGAATGTTGTGCTTGAAGGATATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

423

Amino Acids

46.1

Weight (kDa)

5.5

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	73 - 171	7.9e-21	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	73 - 175	1.7e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	581, 854
AccB1I	GGYRCC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	844
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	3 cut(s)	842, 909, 1167
AclWI	GGATC	4 cut(s)	512, 525, 999, 1161
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	1000, 1219
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	671, 1105
AfiI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
AgsI	TTSAA	8 cut(s)	11, 94, 876, 977, 1085, 1189, 1239, 1259
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	8 cut(s)	82, 250, 416, 426, 706, 727, 827, 916
AluI	AGCT	8 cut(s)	82, 250, 416, 426, 706, 727, 827, 916
Alw26I	GTCTC	3 cut(s)	58, 604, 932
AlwI	GGATC	4 cut(s)	512, 525, 999, 1161
AlwNI	CAGNNNCTG	1 cut(s)	794
Aor13HI	TCCGGA	1 cut(s)	846
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	1000, 1219
Asp700I	GAANNNNTTC	3 cut(s)	336, 653, 1089
AsuHPI	GGTGA	5 cut(s)	138, 182, 332, 341, 1088
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	856, 888
BauI	CACGAG	1 cut(s)	607
BccI	CCATC	5 cut(s)	308, 344, 639, 1094, 1154
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	888
BcoDI	GTCTC	3 cut(s)	58, 604, 932
BfaI	CTAG	2 cut(s)	276, 953
BfmI	CTRYAG	2 cut(s)	288, 1042
Bme1390I	CCNGG	1 cut(s)	888
BmgBI	CACGTC	1 cut(s)	108
BmiI	GGNNCC	4 cut(s)	157, 432, 519, 903
BmrFI	CCNGG	1 cut(s)	888
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	5 cut(s)	376, 545, 553, 754, 824
BmuI	ACTGGG	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	1017
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	886, 897
BsaWI	WCCGGW	1 cut(s)	846
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 293, 350
Bse1I	ACTGG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	2 cut(s)	886, 897
BseGI	GGATG	2 cut(s)	319, 391
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BseMII	CTCAG	6 cut(s)	371, 693, 714, 786, 1098, 1187
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	847
BslI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BsmAI	GTCTC	3 cut(s)	58, 604, 932
BsnI	GGCC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	846
Bsp143I	GATC	5 cut(s)	517, 700, 991, 1131, 1153
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	842, 909, 1167
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	6 cut(s)	372, 692, 715, 787, 1099, 1188
BspEI	TCCGGA	1 cut(s)	846
BspLI	GGNNCC	4 cut(s)	157, 432, 519, 903
BspPI	GGATC	4 cut(s)	512, 525, 999, 1161
BspT107I	GGYRCC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	844
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	2 cut(s)	886, 897
BssMI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
BssSI	CACGAG	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	897
Bst2BI	CACGAG	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	3 cut(s)	790, 946, 982
Bst6I	CTCTTC	2 cut(s)	813, 1184
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstC8I	GCNNGC	2 cut(s)	252, 1227
BstDEI	CTNAG	9 cut(s)	380, 614, 665, 679, 723, 795, 1107, 1196, 1230
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	2 cut(s)	319, 391
BstKTI	GATC	5 cut(s)	520, 703, 994, 1134, 1156
BstMAI	GTCTC	3 cut(s)	58, 604, 932
BstMBI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
BstNI	CCWGG	1 cut(s)	888
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	886
BstSFI	CTRYAG	2 cut(s)	288, 1042
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	897
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	319, 391
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	252, 1227
CaiI	CAGNNNCTG	1 cut(s)	794
Csp6I	GTAC	2 cut(s)	670, 1104
CviAII	CATG	4 cut(s)	362, 435, 462, 898
CviQI	GTAC	2 cut(s)	670, 1104
DdeI	CTNAG	9 cut(s)	380, 614, 665, 679, 723, 795, 1107, 1196, 1230
DpnI	GATC	5 cut(s)	519, 702, 993, 1133, 1155
DpnII	GATC	5 cut(s)	517, 700, 991, 1131, 1153
DraI	TTTAAA	1 cut(s)	1005
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	813, 1184
EarI	CTCTTC	2 cut(s)	813, 1184
Eco130I	CCWWGG	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	4 cut(s)	365, 438, 465, 901
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FatI	CATG	4 cut(s)	361, 434, 461, 897
FauI	CCCGC	1 cut(s)	1160
FauNDI	CATATG	1 cut(s)	636
FokI	GGATG	2 cut(s)	326, 398
FspBI	CTAG	2 cut(s)	276, 953
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	847
Hin1II	CATG	4 cut(s)	365, 438, 465, 901
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	4 cut(s)	69, 649, 1038, 1192
HpaII	CCGG	1 cut(s)	847
HphI	GGTGA	5 cut(s)	138, 182, 332, 341, 1088
Hpy188I	TCNGA	5 cut(s)	381, 509, 996, 1197, 1245
Hpy188III	TCNNGA	1 cut(s)	847
HpyAV	CCTTC	4 cut(s)	326, 535, 707, 1253
HpyCH4III	ACNGT	3 cut(s)	790, 946, 982
HpyCH4IV	ACGT	2 cut(s)	89, 107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
HpyF3I	CTNAG	9 cut(s)	380, 614, 665, 679, 723, 795, 1107, 1196, 1230
HpySE526I	ACGT	2 cut(s)	89, 107
Hsp92II	CATG	4 cut(s)	365, 438, 465, 901
Kpn2I	TCCGGA	1 cut(s)	846
Kzo9I	GATC	5 cut(s)	517, 700, 991, 1131, 1153
LmnI	GCTCC	3 cut(s)	247, 430, 849
LweI	GCATC	5 cut(s)	376, 545, 553, 754, 824
MaeI	CTAG	2 cut(s)	276, 953
MaeII	ACGT	2 cut(s)	89, 107
MaeIII	GTNAC	6 cut(s)	144, 658, 718, 734, 750, 790
MalI	GATC	5 cut(s)	519, 702, 993, 1133, 1155
MbiI	CCGCTC	1 cut(s)	844
MboI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
MboII	GAAGA	6 cut(s)	221, 605, 771, 800, 864, 1201
MfeI	CAATTG	2 cut(s)	528, 746
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	63, 1201
MmeI	TCCRAC	4 cut(s)	487, 528, 969, 1035
MnlI	CCTC	6 cut(s)	228, 231, 361, 375, 613, 1154
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	846
MroXI	GAANNNNTTC	3 cut(s)	336, 653, 1089
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	6 cut(s)	141, 480, 492, 557, 1004, 1061
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	1 cut(s)	888
MunI	CAATTG	2 cut(s)	528, 746
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
NcoI	CCATGG	1 cut(s)	897
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	5 cut(s)	517, 700, 991, 1131, 1153
NlaIII	CATG	4 cut(s)	365, 438, 465, 901
NlaIV	GGNNCC	4 cut(s)	157, 432, 519, 903
NmuCI	GTSAC	2 cut(s)	144, 658
NspI	RCATGY	1 cut(s)	365
PdmI	GAANNNNTTC	3 cut(s)	336, 653, 1089
PfeI	GAWTC	2 cut(s)	649, 1038
PleI	GAGTC	2 cut(s)	63, 1200
PpsI	GAGTC	2 cut(s)	63, 1200
PsiI	TTATAA	2 cut(s)	581, 854
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	4 cut(s)	157, 432, 519, 903
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	2 cut(s)	671, 1105
RsaNI	GTAC	2 cut(s)	670, 1104
SaqAI	TTAA	6 cut(s)	141, 480, 492, 557, 1004, 1061
Sau3AI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
SchI	GAGTC	2 cut(s)	63, 1201
ScrFI	CCNGG	1 cut(s)	888
SfaNI	GCATC	5 cut(s)	376, 545, 553, 754, 824
SfcI	CTRYAG	2 cut(s)	288, 1042
SmiI	ATTTAAAT	1 cut(s)	1005
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
SsiI	CCGC	3 cut(s)	842, 909, 1167
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	2 cut(s)	276, 953
StyD4I	CCNGG	1 cut(s)	886
StyI	CCWWGG	1 cut(s)	897
SwaI	ATTTAAAT	1 cut(s)	1005
TaaI	ACNGT	3 cut(s)	790, 946, 982
TaiI	ACGT	2 cut(s)	92, 110
TaqI	TCGA	2 cut(s)	539, 1134
TfiI	GAWTC	2 cut(s)	649, 1038
Tru1I	TTAA	6 cut(s)	141, 480, 492, 557, 1004, 1061
Tru9I	TTAA	6 cut(s)	141, 480, 492, 557, 1004, 1061
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	2 cut(s)	144, 658
Tsp45I	GTSAC	2 cut(s)	144, 658
TspRI	CASTG	1 cut(s)	472
XapI	RAATTY	2 cut(s)	1000, 1219
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	3 cut(s)	336, 653, 1089
XspI	CTAG	2 cut(s)	276, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.