Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Reverse (-)

34610705 .. 34612582

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTTTAAGTCACCGACACTTGCAAGAAACCATGGTGATTTGGTTGGGGTCAGGTGTGAAGTAGCACAACAACAAGAAGTTAGAGATGATGGGTTTTATATGAGGAGGTGTGTGGAGCTTGCAAGAAAGGCTTTTGGGCATACTAGCCCCAATCCTATGGTCGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCTAAAGCTGGCCAACCACATGCTGAGGTTTTTGCTCTGAGGGATGCTGGAGATTTGGCTGAAAATGCAACAGCTTATGTGAGCTTGGAGCCATGTAATCACTATGGGAGAACTCCACCATGCACTGAAGCCCTAATTAAAGCCAAAGTTAAAAGGGTCGTGGTCGGAATGGTGGATCCAAATCCAATTGTAGCATCGAAGGGGTTGGATAGATTAAGAGATGCAGGAATTGATGTTATAACGGGTGTAGAAGAAAAATTATGCACGAGACTAAGTGAGGCTTATATCCATCATATGCTAACTGGGAATCCTTTCGTCACTCTTAGATACTCTATCTCAGCCAATGGACACTTTTTAGATCAGCTTCGGGAAGGAGTTGCTGAGCTTGGTGGTTACTACTCTCAATTGTTACAGGAATATGATGCAATTATACTTTCTTCTGCCACAGTAACTGAGAACAACTCTCTTCCAGCATCACAAGAAGCCGGTGCTAATCAACCGCTCCGGATTATAATAGCGAGTAGTAGTTCTTCAATCCAAATCCCAGGAATGACCATGGAACCAAGCGGTAAGCTAATAATATTTGCAGACAATGACACAACAGTAGAACTAGAAAGCACTCAAACAGGTATTGAAACTGTGGTGTTGGATCAGATAAATTTAAATGCTATTACAGAATACTGCAAATCTCAAGGATTCTGTAGTGTTTTGTTGGATTTAAGGGGAAATATGGGTGATTTTGAAAAGGTTCTCCAAGATGGTACTGAGCAGAACTTGCAAAAAATTGTGATCGAAGTATTGCCCATCTGGGATCAAAGTGGGGGCGGGGATTTCCCTATTGCATTGAAGAGTCTGAGTAAAAGAGTAGAAGTAAAGAATTTGCAGGCTAAGATTTCAAATCAGAATGTTGTGCTTGAAGGATATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

380

Amino Acids

41.26

Weight (kDa)

5.29

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	30 - 127	1.2e-20	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	32 - 131	6e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	449, 722
AccBSI	CCGCTC	1 cut(s)	712
AccIII	TCCGGA	1 cut(s)	714
AciI	CCGC	3 cut(s)	710, 777, 1035
AclWI	GGATC	4 cut(s)	380, 393, 867, 1029
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	868, 1087
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	973
AfiI	CCNNNNNNNGG	2 cut(s)	161, 218
AgsI	TTSAA	6 cut(s)	744, 845, 953, 1057, 1107, 1127
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	7 cut(s)	118, 218, 284, 294, 574, 595, 784
AluI	AGCT	7 cut(s)	118, 218, 284, 294, 574, 595, 784
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	4 cut(s)	380, 393, 867, 1029
AlwNI	CAGNNNCTG	1 cut(s)	662
Aor13HI	TCCGGA	1 cut(s)	714
AoxI	GGCC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	868, 1087
Asp700I	GAANNNNTTC	3 cut(s)	204, 521, 957
AsuHPI	GGTGA	5 cut(s)	3, 47, 200, 209, 956
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	724, 756
BauI	CACGAG	1 cut(s)	475
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	5 cut(s)	83, 176, 507, 962, 1022
BciT130I	CCWGG	1 cut(s)	756
BcoDI	GTCTC	1 cut(s)	472
BfaI	CTAG	2 cut(s)	144, 821
BfmI	CTRYAG	1 cut(s)	910
BlpI	GCTNAGC	1 cut(s)	591
Bme1390I	CCNGG	1 cut(s)	756
BmiI	GGNNCC	3 cut(s)	300, 387, 771
BmrFI	CCNGG	1 cut(s)	756
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	5 cut(s)	244, 413, 421, 622, 692
BmuI	ACTGGG	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	656, 688
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	885
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	31, 754, 765
BsaWI	WCCGGW	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 218
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	31, 754, 765
BseGI	GGATG	2 cut(s)	187, 259
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	161, 218
BseMII	CTCAG	7 cut(s)	225, 239, 561, 582, 654, 966, 1055
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	696, 715
BslI	CCNNNNNNNGG	2 cut(s)	161, 218
BsmAI	GTCTC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	714
Bsp143I	GATC	5 cut(s)	385, 568, 859, 999, 1021
Bsp1720I	GCTNAGC	1 cut(s)	591
Bsp19I	CCATGG	2 cut(s)	31, 765
BspACI	CCGC	3 cut(s)	710, 777, 1035
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	7 cut(s)	226, 240, 560, 583, 655, 967, 1056
BspEI	TCCGGA	1 cut(s)	714
BspLI	GGNNCC	3 cut(s)	300, 387, 771
BspPI	GGATC	4 cut(s)	380, 393, 867, 1029
BsrBI	CCGCTC	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	3 cut(s)	31, 754, 765
BssMI	GATC	5 cut(s)	385, 568, 859, 999, 1021
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	2 cut(s)	31, 765
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	658, 814, 850
Bst6I	CTCTTC	2 cut(s)	681, 1052
BstAPI	GCANNNNNTGC	1 cut(s)	985
BstC8I	GCNNGC	3 cut(s)	120, 220, 1095
BstDSI	CCRYGG	2 cut(s)	31, 765
BstF5I	GGATG	2 cut(s)	187, 259
BstKTI	GATC	5 cut(s)	388, 571, 862, 1002, 1024
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	5 cut(s)	385, 568, 859, 999, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 275, 985
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	1 cut(s)	910
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	2 cut(s)	31, 765
BtsCI	GGATG	2 cut(s)	187, 259
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	3 cut(s)	120, 220, 1095
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr10I	RCCGGY	1 cut(s)	695
Csp6I	GTAC	1 cut(s)	972
CviAII	CATG	5 cut(s)	32, 230, 303, 330, 766
CviQI	GTAC	1 cut(s)	972
DpnI	GATC	5 cut(s)	387, 570, 861, 1001, 1023
DpnII	GATC	5 cut(s)	385, 568, 859, 999, 1021
DraI	TTTAAA	1 cut(s)	873
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	681, 1052
EarI	CTCTTC	2 cut(s)	681, 1052
Eco130I	CCWWGG	2 cut(s)	31, 765
Eco57I	CTGAAG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	31, 765
ErhI	CCWWGG	2 cut(s)	31, 765
FaeI	CATG	5 cut(s)	35, 233, 306, 333, 769
FalI	AAGNNNNNCTT	4 cut(s)	115, 147, 475, 507
FatI	CATG	5 cut(s)	31, 229, 302, 329, 765
FauI	CCCGC	1 cut(s)	1028
FauNDI	CATATG	1 cut(s)	504
FokI	GGATG	2 cut(s)	194, 266
FspBI	CTAG	2 cut(s)	144, 821
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	2 cut(s)	696, 715
Hin1II	CATG	5 cut(s)	35, 233, 306, 333, 769
HinfI	GANTC	3 cut(s)	517, 906, 1060
HpaII	CCGG	2 cut(s)	696, 715
HphI	GGTGA	5 cut(s)	3, 47, 200, 209, 956
Hpy188I	TCNGA	5 cut(s)	249, 377, 864, 1065, 1113
Hpy188III	TCNNGA	2 cut(s)	578, 715
HpyAV	CCTTC	4 cut(s)	194, 403, 575, 1121
HpyCH4III	ACNGT	3 cut(s)	658, 814, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 275, 985
Hsp92II	CATG	5 cut(s)	35, 233, 306, 333, 769
Kpn2I	TCCGGA	1 cut(s)	714
Kzo9I	GATC	5 cut(s)	385, 568, 859, 999, 1021
LmnI	GCTCC	3 cut(s)	115, 298, 717
LweI	GCATC	5 cut(s)	244, 413, 421, 622, 692
MaeI	CTAG	2 cut(s)	144, 821
MaeIII	GTNAC	5 cut(s)	9, 526, 602, 618, 658
MalI	GATC	5 cut(s)	387, 570, 861, 1001, 1023
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	5 cut(s)	385, 568, 859, 999, 1021
MboII	GAAGA	5 cut(s)	473, 639, 668, 732, 1069
MfeI	CAATTG	2 cut(s)	396, 614
MflI	RGATCY	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	9 cut(s)	345, 396, 438, 467, 614, 636, 868, 993, 1087
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	1069
MmeI	TCCRAC	4 cut(s)	355, 396, 837, 903
MnlI	CCTC	5 cut(s)	96, 99, 229, 243, 481
Mox20I	TGGCCA	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	714
MroXI	GAANNNNTTC	3 cut(s)	204, 521, 957
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	6 cut(s)	6, 348, 360, 425, 872, 929
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	2 cut(s)	696, 715
MspR9I	CCNGG	1 cut(s)	756
MunI	CAATTG	2 cut(s)	396, 614
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	3 cut(s)	128, 275, 985
NcoI	CCATGG	2 cut(s)	31, 765
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	5 cut(s)	385, 568, 859, 999, 1021
NlaIII	CATG	5 cut(s)	35, 233, 306, 333, 769
NlaIV	GGNNCC	3 cut(s)	300, 387, 771
NmuCI	GTSAC	2 cut(s)	9, 526
NspI	RCATGY	1 cut(s)	233
PdmI	GAANNNNTTC	3 cut(s)	204, 521, 957
PfeI	GAWTC	2 cut(s)	517, 906
PleI	GAGTC	1 cut(s)	1068
PpsI	GAGTC	1 cut(s)	1068
PsiI	TTATAA	2 cut(s)	449, 722
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	3 cut(s)	300, 387, 771
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	1 cut(s)	973
RsaNI	GTAC	1 cut(s)	972
SaqAI	TTAA	6 cut(s)	6, 348, 360, 425, 872, 929
Sau3AI	GATC	5 cut(s)	385, 568, 859, 999, 1021
SchI	GAGTC	1 cut(s)	1069
ScrFI	CCNGG	1 cut(s)	756
SfaNI	GCATC	5 cut(s)	244, 413, 421, 622, 692
SfcI	CTRYAG	1 cut(s)	910
SmiI	ATTTAAAT	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	900
SmoI	CTYRAG	1 cut(s)	900
Sse9I	AATT	9 cut(s)	345, 396, 438, 467, 614, 636, 868, 993, 1087
SsiI	CCGC	3 cut(s)	710, 777, 1035
SspI	AATATT	1 cut(s)	792
SspMI	CTAG	2 cut(s)	144, 821
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	2 cut(s)	31, 765
SwaI	ATTTAAAT	1 cut(s)	873
TaaI	ACNGT	3 cut(s)	658, 814, 850
TaqI	TCGA	2 cut(s)	407, 1002
TasI	AATT	9 cut(s)	345, 396, 438, 467, 614, 636, 868, 993, 1087
TfiI	GAWTC	2 cut(s)	517, 906
Tru1I	TTAA	6 cut(s)	6, 348, 360, 425, 872, 929
Tru9I	TTAA	6 cut(s)	6, 348, 360, 425, 872, 929
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	9, 526
Tsp45I	GTSAC	2 cut(s)	9, 526
TspRI	CASTG	1 cut(s)	340
XapI	RAATTY	2 cut(s)	868, 1087
XceI	RCATGY	1 cut(s)	233
XmnI	GAANNNNTTC	3 cut(s)	204, 521, 957
XspI	CTAG	2 cut(s)	144, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.