Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

17020262 .. 17023645

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G112100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCAAGTTCAAAGGCTTTCACTTCCAAGTTACACCCTCACTCCACCCAATGTCTCACCATCACAGCAACTCTCCTCCAAGATTTTGAGGTTGAATCCGAATTCCAAATCTGGGTTTTGTAATTCGCTCAAAATGGTGTTCAAATCACCAACTGGTTTGAGAAGCCATGGTGGTTCGGTGGTGGTCAGGTGTGGAGTGGCACAGCAAGAAGATACTGATGACGGCTTCTATATGAGGAGATGTGTGGAGCTTGCAAGAAAGGCTATCGGGTGTACCAGCCCAAATCCTATGGTGGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCTAAAGCTGGCCAGCCACATGCTGAAGTTTTTGCTCTGAGGGATGCCGGGGATTTGGCTGAGAATGCAACAGCATATGTGAGCTTGGAACCATGTAATCACTATGGGAGAACTCCACCATGCAGTGAAGCCCTAATTAAAGCCAAAGTGAAAAGGGTGGTGGTCGGAATGGTGGATCCAAATCCAATCGTAGCATCAAAGGGGTTGGATAGATTAAGAGATGCGGGAATTGAAGTTACTACGGGTGTAGAAGAAGAATCATGCAAGAGGTTAAACGAAGCTTATATCCATCATATGCTAACAGGGAATCCTTTTGTCACTATGAGATACTCTATATCAGTCAACGGACACTTTCTAGATCAGCTTGGAGAAGGAGTTGCCAAGGCTGGTGGTTACTACTCACAATTGTTACAGGAATATGATGCAATTATTCTTTCTTCTTCCTCAATAATTGAGAACGCCTCTATTCCAGTATCCCAAGAAGGTGGAGCCAATCAACCAGTCCAGATTATACTAGCTAGGAATAGTAGTTCTCCAATCCAAATCCCTTCTCTGACCATGGAACCAATTGGTAAGCTAATAATCTTTTCAGACAAAGAGACAACAGTAGAACTAGAAAGAGCTCACACAGGTATTGAAACGGTGGTGTTGGATCAGATAAATTTAGAAGCTATTTTGGAATTTTGTAACTCTCAAGGATTGTGTAGTGTTTTGTTGGATTTAAAAGGAAATATAGGTGATATCGAAGAGCTTCTCCAAGACGGTATTGAGAAGAATTTGTTGCAAAAAATCGTTATAGAAGTATTGCCCCTGTGGGAAGCAAATGATGGTGGGAACTTTCCTATTGCATTGAAGAGTCTAAGAAAAAGACTAGAAGTGAAGAATTTGAAGCCTAAGGTTTCAAGTGAGAATGTTGTGCTTGAGGGATATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

426

Amino Acids

46.15

Weight (kDa)

5.85

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	3 cut(s)	512, 525, 1002
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	5 cut(s)	100, 1003, 1022, 1117, 1225
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
AgsI	TTSAA	8 cut(s)	11, 94, 142, 575, 980, 1195, 1231, 1245
AloI	GAACNNNNNNTCC	2 cut(s)	856, 888
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	2 cut(s)	58, 935
AlwI	GGATC	3 cut(s)	512, 525, 1002
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	5 cut(s)	100, 1003, 1022, 1117, 1225
Asp700I	GAANNNNTTC	2 cut(s)	336, 1092
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	5 cut(s)	48, 138, 332, 341, 1091
AxyI	CCTNAGG	1 cut(s)	1236
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	967
Bbv12I	GWGCWC	1 cut(s)	967
BccI	CCATC	4 cut(s)	67, 308, 639, 1163
BceAI	ACGGC	1 cut(s)	238
BciVI	GTATCC	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	58, 935
BfaI	CTAG	5 cut(s)	698, 857, 861, 956, 1214
BfuI	GTATCC	1 cut(s)	826
Bme1390I	CCNGG	1 cut(s)	391
BmiI	GGNNCC	4 cut(s)	432, 519, 832, 906
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	4 cut(s)	376, 545, 553, 754
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpuEI	CTTGAG	1 cut(s)	1020
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	4 cut(s)	166, 390, 723, 900
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 702, 732
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 293, 350
Bse1I	ACTGG	3 cut(s)	157, 812, 842
Bse21I	CCTNAGG	1 cut(s)	1236
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	4 cut(s)	166, 390, 723, 900
BseGI	GGATG	2 cut(s)	319, 391
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BseMII	CTCAG	2 cut(s)	371, 393
BseNI	ACTGG	3 cut(s)	157, 812, 842
BseRI	GAGGAG	2 cut(s)	64, 250
BshFI	GGCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	967
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BsmAI	GTCTC	2 cut(s)	58, 935
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	3 cut(s)	517, 700, 994
Bsp19I	CCATGG	2 cut(s)	166, 900
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	372, 394
BspLI	GGNNCC	4 cut(s)	432, 519, 832, 906
BspPI	GGATC	3 cut(s)	512, 525, 1002
BspQI	GCTCTTC	1 cut(s)	1083
BsrI	ACTGG	3 cut(s)	157, 812, 842
BssECI	CCNNGG	4 cut(s)	166, 390, 723, 900
BssMI	GATC	3 cut(s)	517, 700, 994
BssT1I	CCWWGG	3 cut(s)	166, 723, 900
Bst4CI	ACNGT	3 cut(s)	949, 985, 1106
Bst6I	CTCTTC	2 cut(s)	1083, 1190
BstC8I	GCNNGC	3 cut(s)	252, 352, 356
BstDEI	CTNAG	4 cut(s)	380, 402, 1202, 1236
BstDSI	CCRYGG	2 cut(s)	166, 900
BstF5I	GGATG	2 cut(s)	319, 391
BstKTI	GATC	3 cut(s)	520, 703, 997
BstMAI	GTCTC	2 cut(s)	58, 935
BstMBI	GATC	3 cut(s)	517, 700, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 407
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	1236
BsuI	GTATCC	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	2 cut(s)	166, 900
BtsCI	GGATG	2 cut(s)	319, 391
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	252, 352, 356
Csp6I	GTAC	1 cut(s)	273
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviAII	CATG	6 cut(s)	167, 362, 435, 462, 603, 901
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	4 cut(s)	380, 402, 1202, 1236
DpnI	GATC	3 cut(s)	519, 702, 996
DpnII	GATC	3 cut(s)	517, 700, 994
DraI	TTTAAA	1 cut(s)	1065
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	1083, 1190
EarI	CTCTTC	2 cut(s)	1083, 1190
Ecl136II	GAGCTC	1 cut(s)	965
Eco130I	CCWWGG	3 cut(s)	166, 723, 900
Eco24I	GRGCYC	1 cut(s)	967
Eco32I	GATATC	2 cut(s)	1084, 1271
Eco53kI	GAGCTC	1 cut(s)	965
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	1236
EcoICRI	GAGCTC	1 cut(s)	965
EcoRI	GAATTC	1 cut(s)	100
EcoRV	GATATC	2 cut(s)	1084, 1271
EcoT14I	CCWWGG	3 cut(s)	166, 723, 900
EcoT38I	GRGCYC	1 cut(s)	967
ErhI	CCWWGG	3 cut(s)	166, 723, 900
FaeI	CATG	6 cut(s)	170, 365, 438, 465, 606, 904
FatI	CATG	6 cut(s)	166, 361, 434, 461, 602, 900
FauI	CCCGC	1 cut(s)	559
FauNDI	CATATG	2 cut(s)	418, 636
FokI	GGATG	2 cut(s)	326, 398
FriOI	GRGCYC	1 cut(s)	967
FspBI	CTAG	5 cut(s)	698, 857, 861, 956, 1214
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	6 cut(s)	170, 365, 438, 465, 606, 904
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	4 cut(s)	94, 599, 649, 1198
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	5 cut(s)	48, 138, 332, 341, 1091
Hpy166II	GTNNAC	2 cut(s)	273, 685
Hpy188I	TCNGA	6 cut(s)	99, 381, 509, 897, 934, 999
Hpy188III	TCNNGA	2 cut(s)	698, 847
Hpy8I	GTNNAC	2 cut(s)	273, 685
HpyAV	CCTTC	4 cut(s)	326, 707, 818, 900
HpyCH4III	ACNGT	3 cut(s)	949, 985, 1106
HpyCH4V	TGCA	8 cut(s)	4, 254, 410, 465, 606, 767, 1126, 1190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 407
HpyF3I	CTNAG	4 cut(s)	380, 402, 1202, 1236
Hsp92II	CATG	6 cut(s)	170, 365, 438, 465, 606, 904
Kzo9I	GATC	3 cut(s)	517, 700, 994
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	2 cut(s)	247, 830
LweI	GCATC	4 cut(s)	376, 545, 553, 754
MaeI	CTAG	5 cut(s)	698, 857, 861, 956, 1214
MaeIII	GTNAC	6 cut(s)	29, 577, 658, 734, 750, 1028
MalI	GATC	3 cut(s)	519, 702, 996
MboI	GATC	3 cut(s)	517, 700, 994
MboII	GAAGA	9 cut(s)	221, 605, 608, 771, 774, 1100, 1126, 1207, 1234
MfeI	CAATTG	2 cut(s)	746, 909
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	967
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	1207
MmeI	TCCRAC	4 cut(s)	487, 528, 972, 1038
MnlI	CCTC	9 cut(s)	47, 81, 85, 228, 375, 603, 796, 814, 1258
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	2 cut(s)	336, 1092
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	480, 557, 614, 1064
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	391
MunI	CAATTG	2 cut(s)	746, 909
Mva1269I	GAATGC	1 cut(s)	412
MwoI	GCNNNNNNNGC	2 cut(s)	260, 407
NciI	CCSGG	1 cut(s)	391
NcoI	CCATGG	2 cut(s)	166, 900
NdeI	CATATG	2 cut(s)	418, 636
NdeII	GATC	3 cut(s)	517, 700, 994
NlaIII	CATG	6 cut(s)	170, 365, 438, 465, 606, 904
NlaIV	GGNNCC	4 cut(s)	432, 519, 832, 906
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	365
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	2 cut(s)	336, 1092
PfeI	GAWTC	3 cut(s)	94, 599, 649
PleI	GAGTC	1 cut(s)	1206
PpsI	GAGTC	1 cut(s)	1206
Psp124BI	GAGCTC	1 cut(s)	967
PspN4I	GGNNCC	4 cut(s)	432, 519, 832, 906
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	967
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	4 cut(s)	480, 557, 614, 1064
Sau3AI	GATC	3 cut(s)	517, 700, 994
SchI	GAGTC	1 cut(s)	1207
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	4 cut(s)	376, 545, 553, 754
SmlI	CTYRAG	2 cut(s)	1035, 1262
SmoI	CTYRAG	2 cut(s)	1035, 1262
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	5 cut(s)	698, 857, 861, 956, 1214
SstI	GAGCTC	1 cut(s)	967
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	3 cut(s)	166, 723, 900
TaaI	ACNGT	3 cut(s)	949, 985, 1106
TaqI	TCGA	1 cut(s)	1086
TfiI	GAWTC	3 cut(s)	94, 599, 649
Tru1I	TTAA	4 cut(s)	480, 557, 614, 1064
Tru9I	TTAA	4 cut(s)	480, 557, 614, 1064
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	658
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	472
XapI	RAATTY	5 cut(s)	100, 1003, 1022, 1117, 1225
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	2 cut(s)	336, 1092
XspI	CTAG	5 cut(s)	698, 857, 861, 956, 1214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.