Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

34361924 .. 34363942

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG181500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCAAGTTCAACGGCTTTCACTCCCAAATTATACTCTCTCTCCACCCAATGTCTCACAATCAAAGCAACTCTCCACCAAGCTTTTGAGGTTGAATCCACATTCCACATCTGGGTTTTGCAATTCAGCAAAATCGATGTTTAAGTCACCAGCAGGTGTAAGAAACCATGGTGGTTTGGTTGGGGTCAGGTGTGAAGTAGCACAACAAGAAGATAGAGACGATGGGTTTTATATGAGGAGGTGTGTGGAGCTTGCAAGAAAGGCTATTGGACGTACTAGCCCCAATCCTATGGTCGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCTAAAGCTGGCCAACCACATGCTGAGGTTTTTGCTCTGAGAGATGCTGGAGATTTGGCTGAAAATGCAACAGCTTATGTGAGCTTGGAGCCATGTAATCACTATGGGAGAACTCCACCATGCACTGAAGCCCTAATCAAAGCCAAAGTTAAAAGGGTCGTGGTCGGAATGGTGGATCCAAATCCAATTGTAGCATCGAAGGGGTTGGATAGATTAAGAGATGCAGGAATTGATGTTATAACGGGTGTAGAAGAAAAATTATGCAAGAGACTAAGTGAGGCTTATATCCATCATATGCTAACCGGGAATCCTTTCGTCACTCTCAGATACTCTATCTCAGTCAATGGACACTTTTTAGATCAGCTTGGGGAAGGAGTGGCTGAGCTTGGTGGTTACTACTCTCAATTGTTACAGGAACATGATGCAATTATACTTTCTTCTGCCACAGTAACTGAGAAAAACTCTCTTCCAGCATCACAAGAAGCCGGTGCTAATCAACCGCTCCGGATTATAATAGCGAGTAGTAGTTCTTCAATCCAAATCCCAGGACTGACCATGGAACCAAGCAGTAAACTAATAATATTTGCAGACAATGAGATAGCAGTAGAACTAGAAGGCACTCATACAGGTATTGAAACTGTGGTGTTGGATCAGATAAATTTAAATGCTATTACAGAATACTGCAAATCTCAAGGATTCTGTAGTGTTTTGTTGGATTTAAGGGGAAATATAGGTGATTTTGAAAAGGTTCTCCAAGATGGTACTGAGCAGAACTTGCAAAAAATTGTGATCGAAGTATTGCCCATCTGGGATCAAAGTGGGGGTGGGGATTTCCCTATTGCATTGAAGAGTCTGAGTAAAAGAGTAGAAGTAAAGAATTTGCAGGCTAAGATTTCAAATCAGAATGTTGTGCTTGAAGGATATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

423

Amino Acids

45.87

Weight (kDa)

6.23

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	74 - 171	1.3e-20	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	76 - 175	7.6e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	581, 854
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccBSI	CCGCTC	1 cut(s)	844
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	1 cut(s)	842
AclWI	GGATC	4 cut(s)	512, 525, 999, 1161
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	1000, 1219
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	274, 1105
AfiI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
AgsI	TTSAA	8 cut(s)	11, 94, 876, 977, 1085, 1189, 1239, 1259
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	7 cut(s)	82, 250, 350, 416, 426, 706, 727
AluI	AGCT	7 cut(s)	82, 250, 350, 416, 426, 706, 727
Alw26I	GTCTC	3 cut(s)	58, 210, 604
AlwI	GGATC	4 cut(s)	512, 525, 999, 1161
AlwNI	CAGNNNCTG	1 cut(s)	794
Aor13HI	TCCGGA	1 cut(s)	846
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	1000, 1219
Asp700I	GAANNNNTTC	3 cut(s)	336, 653, 1089
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	4 cut(s)	138, 332, 341, 1088
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	2 cut(s)	856, 888
BbvCI	CCTCAGC	1 cut(s)	366
BccI	CCATC	5 cut(s)	215, 308, 639, 1094, 1154
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	888
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	3 cut(s)	58, 210, 604
BfaI	CTAG	2 cut(s)	276, 953
BfmI	CTRYAG	1 cut(s)	1042
BfuAI	ACCTGC	1 cut(s)	143
BlpI	GCTNAGC	1 cut(s)	723
Bme1390I	CCNGG	2 cut(s)	646, 888
BmiI	GGNNCC	3 cut(s)	432, 519, 903
BmrFI	CCNGG	2 cut(s)	646, 888
BmsI	GCATC	5 cut(s)	376, 545, 553, 754, 824
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	1017
BpuMI	CCSGG	1 cut(s)	646
Bsa29I	ATCGAT	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	166, 886, 897
BsaWI	WCCGGW	1 cut(s)	846
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 293, 350
Bse118I	RCCGGY	1 cut(s)	827
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	166, 886, 897
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BseMII	CTCAG	8 cut(s)	357, 371, 679, 693, 714, 786, 1098, 1187
BseRI	GAGGAG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	354
BshVI	ATCGAT	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	645, 828, 847
BslI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BsmAI	GTCTC	3 cut(s)	58, 210, 604
BsmBI	CGTCTC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	846
Bsp143I	GATC	5 cut(s)	517, 700, 991, 1131, 1153
Bsp1720I	GCTNAGC	1 cut(s)	723
Bsp19I	CCATGG	2 cut(s)	166, 897
BspACI	CCGC	1 cut(s)	842
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	8 cut(s)	358, 372, 678, 692, 715, 787, 1099, 1188
BspDI	ATCGAT	1 cut(s)	134
BspEI	TCCGGA	1 cut(s)	846
BspLI	GGNNCC	3 cut(s)	432, 519, 903
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	4 cut(s)	512, 525, 999, 1161
BsrBI	CCGCTC	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	827
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	3 cut(s)	166, 886, 897
BssMI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
BssT1I	CCWWGG	2 cut(s)	166, 897
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	2 cut(s)	790, 982
Bst6I	CTCTTC	2 cut(s)	813, 1184
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstC8I	GCNNGC	3 cut(s)	252, 352, 1227
BstDSI	CCRYGG	2 cut(s)	166, 897
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	5 cut(s)	520, 703, 994, 1134, 1156
BstMAI	GTCTC	3 cut(s)	58, 210, 604
BstMBI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
BstNI	CCWGG	1 cut(s)	888
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	644, 886
BstSFI	CTRYAG	1 cut(s)	1042
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	134
BtgI	CCRYGG	2 cut(s)	166, 897
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	252, 352, 1227
CaiI	CAGNNNCTG	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	827
ClaI	ATCGAT	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	273, 1104
CviAII	CATG	6 cut(s)	167, 362, 435, 462, 761, 898
CviQI	GTAC	2 cut(s)	273, 1104
DpnI	GATC	5 cut(s)	519, 702, 993, 1133, 1155
DpnII	GATC	5 cut(s)	517, 700, 991, 1131, 1153
DraI	TTTAAA	1 cut(s)	1005
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	813, 1184
EarI	CTCTTC	2 cut(s)	813, 1184
Eco130I	CCWWGG	2 cut(s)	166, 897
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	166, 897
ErhI	CCWWGG	2 cut(s)	166, 897
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	6 cut(s)	170, 365, 438, 465, 764, 901
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FatI	CATG	6 cut(s)	166, 361, 434, 461, 760, 897
FauNDI	CATATG	1 cut(s)	636
FokI	GGATG	1 cut(s)	326
FspBI	CTAG	2 cut(s)	276, 953
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	3 cut(s)	645, 828, 847
Hin1II	CATG	6 cut(s)	170, 365, 438, 465, 764, 901
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	4 cut(s)	94, 649, 1038, 1192
HpaII	CCGG	3 cut(s)	645, 828, 847
HphI	GGTGA	4 cut(s)	138, 332, 341, 1088
Hpy166II	GTNNAC	1 cut(s)	914
Hpy188I	TCNGA	6 cut(s)	381, 509, 668, 996, 1197, 1245
Hpy188III	TCNNGA	1 cut(s)	847
Hpy8I	GTNNAC	1 cut(s)	914
HpyAV	CCTTC	5 cut(s)	326, 535, 707, 950, 1253
HpyCH4III	ACNGT	2 cut(s)	790, 982
HpyCH4IV	ACGT	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	6 cut(s)	170, 365, 438, 465, 764, 901
Kpn2I	TCCGGA	1 cut(s)	846
Kzo9I	GATC	5 cut(s)	517, 700, 991, 1131, 1153
LmnI	GCTCC	3 cut(s)	247, 430, 849
LweI	GCATC	5 cut(s)	376, 545, 553, 754, 824
MaeI	CTAG	2 cut(s)	276, 953
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	5 cut(s)	144, 658, 734, 750, 790
MalI	GATC	5 cut(s)	519, 702, 993, 1133, 1155
MbiI	CCGCTC	1 cut(s)	844
MboI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
MboII	GAAGA	6 cut(s)	221, 605, 771, 800, 864, 1201
MfeI	CAATTG	2 cut(s)	528, 746
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	1201
MmeI	TCCRAC	4 cut(s)	487, 528, 969, 1035
MnlI	CCTC	5 cut(s)	81, 228, 231, 361, 613
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	846
MroXI	GAANNNNTTC	3 cut(s)	336, 653, 1089
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	3 cut(s)	645, 828, 847
MspR9I	CCNGG	2 cut(s)	646, 888
MunI	CAATTG	2 cut(s)	528, 746
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
NciI	CCSGG	1 cut(s)	646
NcoI	CCATGG	2 cut(s)	166, 897
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	5 cut(s)	517, 700, 991, 1131, 1153
NlaIII	CATG	6 cut(s)	170, 365, 438, 465, 764, 901
NlaIV	GGNNCC	3 cut(s)	432, 519, 903
NmuCI	GTSAC	2 cut(s)	144, 658
NspI	RCATGY	1 cut(s)	365
PaqCI	CACCTGC	1 cut(s)	143
PdmI	GAANNNNTTC	3 cut(s)	336, 653, 1089
PfeI	GAWTC	3 cut(s)	94, 649, 1038
PleI	GAGTC	1 cut(s)	1200
PpsI	GAGTC	1 cut(s)	1200
PsiI	TTATAA	2 cut(s)	581, 854
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	3 cut(s)	432, 519, 903
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	2 cut(s)	274, 1105
RsaNI	GTAC	2 cut(s)	273, 1104
SaqAI	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
Sau3AI	GATC	5 cut(s)	517, 700, 991, 1131, 1153
SchI	GAGTC	1 cut(s)	1201
ScrFI	CCNGG	2 cut(s)	646, 888
SfaNI	GCATC	5 cut(s)	376, 545, 553, 754, 824
SfcI	CTRYAG	1 cut(s)	1042
SmiI	ATTTAAAT	1 cut(s)	1005
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
SsiI	CCGC	1 cut(s)	842
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	2 cut(s)	276, 953
StyD4I	CCNGG	2 cut(s)	644, 886
StyI	CCWWGG	2 cut(s)	166, 897
SwaI	ATTTAAAT	1 cut(s)	1005
TaaI	ACNGT	2 cut(s)	790, 982
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	3 cut(s)	134, 539, 1134
TfiI	GAWTC	3 cut(s)	94, 649, 1038
Tru1I	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
Tru9I	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	2 cut(s)	144, 658
Tsp45I	GTSAC	2 cut(s)	144, 658
TspRI	CASTG	1 cut(s)	472
XapI	RAATTY	2 cut(s)	1000, 1219
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	3 cut(s)	336, 653, 1089
XspI	CTAG	2 cut(s)	276, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.