Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

35167961 .. 35172258

Gene Structure 4298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCAAGTTCAACGGCTTTCACTCCCAAGTTATACTCTCTCTCCACCCAATGTCTCACAATCAAAGCAACTCTCCACCAAGCTTTTGAGGTTGAATCCACATTCCACATCTGGGTTTTGCAATTCAGCAAAAGTGATGTTTAAGTCACCAACAGGTGTAAGAAACCATGGTGGTTTGGTTGGGGTCAGGTGTGAAGTAGCACAACAAGAAGATAGAGACGATGGGTTTTATATGAGGAGGTGTGTGGAGCTTGCAAGAAAGGCTATTGGGCGTACTAGCCCCAATCCTATGGTCGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCTAAAGCTGGCCAACCACATGCTGAGGTTTTTGCTCTGAGAGATGCTGGAGATTTGGCTGAAAATGCAACAGCTTATGTGAGCTTGGAGCCATGTAATCACTATGGGAGAACTCCACCATGCACTGAAGCCCTAATCAAAGCCAAAGTTAAAAGGGTCGTGGTCGGAATGGTGGATCCAAATCCAATTGTAGCATCTAAGGGGTTGGATAGATTAAGAGATGCGGGAATTGATGTTATAACGGGTGTAGAAGAAAAATTATGCAAGAGACTAAATGAGGCTTATATCCATCATATGCTAACCGGGAATCCTTTCGTCACTCTCAGATACTCTATCTCAGTCAATGGACACTTTTTAGATCAGCTTGGGGAAGGAGTTGCTGAGCTTGGTGGTTACTACTCTCAATTGTTACAGGAATATGATGCAATTATACTTTCTTCTGCCACAGTAACTGAGAACAACTCTCTTCCAGCATCACAAGAAGCCGGTGCTGATCAACCGCTCCGGATTATAATAGCGAGTAGTAGTTCTTCAATCCAAATCCCAGGACTGACCATGGAACCAAGCGGTAAGCTAATAATATTTGCAGACAATGAGACAACAGTAGAACTAGAAAGCACTCAAACAGGTATTGAAACTGTGGTGTTGGATCAGATAAATTTAAATGCTATTACAGAATACTGCAAATCTCAAGGATTCTGTAGTGTTTTGTTGGATTTAAGGGGAAATATAAGTGATTTTGAAAAGGTTCTCCAAGATGGTACTGAGCAGAACTTGCAAAAAATTGTGATCGAAGTATTGCCCATCTGGGATCAAAGTGGGGGCGGGGATTTCCCTATTGCATTGAATAGTCTGAGTAAAAGAGTAGAAGTAAAGAATTTGCAGGCTAAGATTTCAAATCAGAATGTTGTGCTTGGAGGATATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

423

Amino Acids

45.88

Weight (kDa)

5.83

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	74 - 171	1.3e-20	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	76 - 176	7.4e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	581, 854
AccBSI	CCGCTC	1 cut(s)	844
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	4 cut(s)	566, 842, 909, 1167
AclWI	GGATC	4 cut(s)	512, 525, 999, 1161
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	1000, 1219
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	274, 1105
AfiI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
AgsI	TTSAA	7 cut(s)	11, 94, 876, 977, 1085, 1189, 1239
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	8 cut(s)	82, 250, 350, 416, 426, 706, 727, 916
AluI	AGCT	8 cut(s)	82, 250, 350, 416, 426, 706, 727, 916
Alw26I	GTCTC	4 cut(s)	58, 210, 604, 932
AlwI	GGATC	4 cut(s)	512, 525, 999, 1161
AlwNI	CAGNNNCTG	1 cut(s)	794
Aor13HI	TCCGGA	1 cut(s)	846
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	1000, 1219
Asp700I	GAANNNNTTC	3 cut(s)	336, 653, 1089
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	3 cut(s)	138, 332, 341
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	2 cut(s)	856, 888
BbvCI	CCTCAGC	1 cut(s)	366
BccI	CCATC	5 cut(s)	215, 308, 639, 1094, 1154
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	888
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	4 cut(s)	58, 210, 604, 932
BfaI	CTAG	2 cut(s)	276, 953
BfmI	CTRYAG	1 cut(s)	1042
BlpI	GCTNAGC	1 cut(s)	723
Bme1390I	CCNGG	2 cut(s)	646, 888
BmiI	GGNNCC	3 cut(s)	432, 519, 903
BmrFI	CCNGG	2 cut(s)	646, 888
BmsI	GCATC	5 cut(s)	376, 545, 553, 754, 824
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	1017
BpuMI	CCSGG	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	166, 886, 897
BsaWI	WCCGGW	1 cut(s)	846
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 293, 350
Bse118I	RCCGGY	1 cut(s)	827
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	3 cut(s)	166, 886, 897
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BseMII	CTCAG	8 cut(s)	357, 371, 679, 693, 714, 786, 1098, 1187
BseRI	GAGGAG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	354
BsiSI	CCGG	3 cut(s)	645, 828, 847
BslI	CCNNNNNNNGG	3 cut(s)	111, 293, 350
BsmAI	GTCTC	4 cut(s)	58, 210, 604, 932
BsmBI	CGTCTC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	846
Bsp143I	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
Bsp1720I	GCTNAGC	1 cut(s)	723
Bsp19I	CCATGG	2 cut(s)	166, 897
BspACI	CCGC	4 cut(s)	566, 842, 909, 1167
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	8 cut(s)	358, 372, 678, 692, 715, 787, 1099, 1188
BspEI	TCCGGA	1 cut(s)	846
BspLI	GGNNCC	3 cut(s)	432, 519, 903
BspPI	GGATC	4 cut(s)	512, 525, 999, 1161
BsrBI	CCGCTC	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	827
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	3 cut(s)	166, 886, 897
BssMI	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
BssT1I	CCWWGG	2 cut(s)	166, 897
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	3 cut(s)	790, 946, 982
Bst6I	CTCTTC	1 cut(s)	813
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstC8I	GCNNGC	3 cut(s)	252, 352, 1227
BstDSI	CCRYGG	2 cut(s)	166, 897
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	6 cut(s)	520, 703, 838, 994, 1134, 1156
BstMAI	GTCTC	4 cut(s)	58, 210, 604, 932
BstMBI	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
BstNI	CCWGG	1 cut(s)	888
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	644, 886
BstSFI	CTRYAG	1 cut(s)	1042
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	2 cut(s)	166, 897
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	252, 352, 1227
CaiI	CAGNNNCTG	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	827
Csp6I	GTAC	2 cut(s)	273, 1104
CviAII	CATG	5 cut(s)	167, 362, 435, 462, 898
CviQI	GTAC	2 cut(s)	273, 1104
DpnI	GATC	6 cut(s)	519, 702, 837, 993, 1133, 1155
DpnII	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
DraI	TTTAAA	1 cut(s)	1005
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Eco130I	CCWWGG	2 cut(s)	166, 897
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	166, 897
ErhI	CCWWGG	2 cut(s)	166, 897
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	5 cut(s)	170, 365, 438, 465, 901
FatI	CATG	5 cut(s)	166, 361, 434, 461, 897
FauI	CCCGC	2 cut(s)	559, 1160
FauNDI	CATATG	1 cut(s)	636
FbaI	TGATCA	1 cut(s)	835
FokI	GGATG	1 cut(s)	326
FspBI	CTAG	2 cut(s)	276, 953
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	3 cut(s)	645, 828, 847
Hin1II	CATG	5 cut(s)	170, 365, 438, 465, 901
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	94, 649, 1038
HpaII	CCGG	3 cut(s)	645, 828, 847
HphI	GGTGA	3 cut(s)	138, 332, 341
Hpy188I	TCNGA	6 cut(s)	381, 509, 668, 996, 1197, 1245
Hpy188III	TCNNGA	1 cut(s)	847
HpyAV	CCTTC	2 cut(s)	326, 707
HpyCH4III	ACNGT	3 cut(s)	790, 946, 982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
Hsp92II	CATG	5 cut(s)	170, 365, 438, 465, 901
Kpn2I	TCCGGA	1 cut(s)	846
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
LmnI	GCTCC	3 cut(s)	247, 430, 849
LweI	GCATC	5 cut(s)	376, 545, 553, 754, 824
MaeI	CTAG	2 cut(s)	276, 953
MaeIII	GTNAC	5 cut(s)	144, 658, 734, 750, 790
MalI	GATC	6 cut(s)	519, 702, 837, 993, 1133, 1155
MbiI	CCGCTC	1 cut(s)	844
MboI	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
MboII	GAAGA	5 cut(s)	221, 605, 771, 800, 864
MfeI	CAATTG	2 cut(s)	528, 746
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	9 cut(s)	121, 528, 570, 599, 746, 768, 1000, 1125, 1219
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	4 cut(s)	487, 528, 969, 1035
MnlI	CCTC	6 cut(s)	81, 228, 231, 361, 613, 1253
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	846
MroXI	GAANNNNTTC	3 cut(s)	336, 653, 1089
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	3 cut(s)	645, 828, 847
MspR9I	CCNGG	2 cut(s)	646, 888
MunI	CAATTG	2 cut(s)	528, 746
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	3 cut(s)	260, 407, 1117
NciI	CCSGG	1 cut(s)	646
NcoI	CCATGG	2 cut(s)	166, 897
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
NlaIII	CATG	5 cut(s)	170, 365, 438, 465, 901
NlaIV	GGNNCC	3 cut(s)	432, 519, 903
NmuCI	GTSAC	2 cut(s)	144, 658
NspI	RCATGY	1 cut(s)	365
PdmI	GAANNNNTTC	3 cut(s)	336, 653, 1089
PfeI	GAWTC	3 cut(s)	94, 649, 1038
PsiI	TTATAA	2 cut(s)	581, 854
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	3 cut(s)	432, 519, 903
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	2 cut(s)	274, 1105
RsaNI	GTAC	2 cut(s)	273, 1104
SaqAI	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
Sau3AI	GATC	6 cut(s)	517, 700, 835, 991, 1131, 1153
ScrFI	CCNGG	2 cut(s)	646, 888
SfaNI	GCATC	5 cut(s)	376, 545, 553, 754, 824
SfcI	CTRYAG	1 cut(s)	1042
SmiI	ATTTAAAT	1 cut(s)	1005
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
Sse9I	AATT	9 cut(s)	121, 528, 570, 599, 746, 768, 1000, 1125, 1219
SsiI	CCGC	4 cut(s)	566, 842, 909, 1167
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	2 cut(s)	276, 953
StyD4I	CCNGG	2 cut(s)	644, 886
StyI	CCWWGG	2 cut(s)	166, 897
SwaI	ATTTAAAT	1 cut(s)	1005
TaaI	ACNGT	3 cut(s)	790, 946, 982
TaqI	TCGA	1 cut(s)	1134
TasI	AATT	9 cut(s)	121, 528, 570, 599, 746, 768, 1000, 1125, 1219
TfiI	GAWTC	3 cut(s)	94, 649, 1038
Tru1I	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
Tru9I	TTAA	5 cut(s)	141, 492, 557, 1004, 1061
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	2 cut(s)	144, 658
Tsp45I	GTSAC	2 cut(s)	144, 658
TspRI	CASTG	1 cut(s)	472
XapI	RAATTY	2 cut(s)	1000, 1219
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	3 cut(s)	336, 653, 1089
XspI	CTAG	2 cut(s)	276, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.