Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Reverse (-)

17593726 .. 17595784

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCAAGTTCAAAAACTTTCACTCCCAAGTTACACCCTAAGTCCACCCAATGGCTCACTATCTCAGCAACTTTCCACCAAGCTTTTGAGGTTGAATCCAAGTCCCAAATCGGGTTTTTGCAGTTCCTTCAAAAGGGTGTCGAAATCACCAACTGGTTTAAGAACCCATGGTAAGTTTGTTGGGGTCACATGTGGAGTGGCACAACAAGAGGATACAGATGATGGGTTCTACATGAGGAGGTGTGTGGAGCTTGCAAGAACGGCTATCGGGTGCACCAGCCCCAATCCTATGGTGGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCAAAAGCTGGCCAGCCGCATGCTGAGGTCTTTGCTCTGAGAGATGCTGGGGATTTGGCTGAGAATGCAACGGCATATGTGAGCTTGGAACCATGTAATCATTATGGGAGAACTCCACCATGCAGTGAAGCACTAATCAAAGCCAAAGTGAAAAGAGTGGTGGTCGGAATGGTGGATCCGAATCCAATTGTAGCATCAAGGGGATTGGATAGATTAAGAGATGCAGGAATTGATGTTGCTACGTGCGTAGAGGAAGAATTATGCAGGAGGCTAAATGAGGCGTATATCCATCGTATGCTAACGGGGAATCCTTTCGTCACTATCAGATACTCGATCTCAGTCAATGGACGCTTTCTGGATCAGCTTGGGGAAGGAGCTGCCACGTCTGGTGGTTACTATTCGCAATTGTTACAGGAATATGATGCAGTTATTCTTTCTCCTTCCTCAATAATGGAGAACGTCTCTATTCCCACATCCAAAGAAGCTGGAGCCAATCAACCACTTCGGATTATAATAGCTAGGAATATTAGTTCTCCAATCAAAATCTCTGCTCTCACAGTGGAACCCACAGATAAGCTAATAGTCTTTGCAGACAAGGAGACATCGGTAGAACTAGAGAGAGCTCAAACAGGTATCGAAACAGTGGTGTTTGATCAAATAAGCTTAAATGCTATTTTGGAATATTGTAACTCTCAAGGAATGTGTAGTGTTTTGTTCGACTTAAAAGGAAATGTTAGTGATTTTGAAGAGTTTCTCCAAGATGGTATTGAACAGAATTTGCTGCAAAAAATTGTGGTAGAAGTATTGCCGCTGTGGGATGAAAATGATGTCCGGAACTTTCCTGTTGCATTGAAGGATCTGGGCAAAAGACTGCAAGTGGAGAATTTGCAGCCGAAGATTTCAAATGAGAGTGTTGTGCTTGAGGGATATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

426

Amino Acids

46.44

Weight (kDa)

5.48

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AccB7I	CCANNNNNTGG	2 cut(s)	50, 350
AccIII	TCCGGA	1 cut(s)	1173
AciI	CCGC	2 cut(s)	359, 1151
AclWI	GGATC	4 cut(s)	512, 525, 708, 1206
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	1117, 1225
AfiI	CCNNNNNNNGG	5 cut(s)	50, 110, 132, 293, 350
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	7 cut(s)	11, 94, 130, 1088, 1112, 1195, 1245
AjiI	CACGTC	1 cut(s)	726
AloI	GAACNNNNNNTCC	2 cut(s)	856, 888
Alw21I	GWGCWC	2 cut(s)	275, 967
Alw26I	GTCTC	2 cut(s)	808, 935
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	4 cut(s)	512, 525, 708, 1206
Aor13HI	TCCGGA	1 cut(s)	1173
AoxI	GGCC	1 cut(s)	352
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	719, 1123, 1231
ApoI	RAATTY	2 cut(s)	1117, 1225
Asp700I	GAANNNNTTC	3 cut(s)	336, 653, 1092
AsuHPI	GGTGA	3 cut(s)	138, 332, 341
BaeGI	GKGCMC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	967
Bbv12I	GWGCWC	2 cut(s)	275, 967
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	706, 1110, 1243
BccI	CCATC	4 cut(s)	215, 308, 639, 1097
BceAI	ACGGC	2 cut(s)	276, 429
BciVI	GTATCC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	994
BcoDI	GTCTC	2 cut(s)	808, 935
BfaI	CTAG	2 cut(s)	861, 956
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	5 cut(s)	359, 720, 1124, 1151, 1232
BlsI	GCNGC	5 cut(s)	360, 721, 1125, 1152, 1233
BmgBI	CACGTC	1 cut(s)	726
BmiI	GGNNCC	4 cut(s)	432, 519, 832, 906
BmsI	GCATC	4 cut(s)	376, 545, 553, 754
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	1 cut(s)	849
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	1020
BsaAI	YACGTR	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	1173
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 110, 132, 293, 350
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	1173
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	319, 815, 1165
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	5 cut(s)	50, 110, 132, 293, 350
BseMII	CTCAG	5 cut(s)	77, 357, 371, 393, 693
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	706, 1110, 1243
BseYI	CCCAGC	1 cut(s)	389
BshFI	GGCC	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	275, 967
BsiSI	CCGG	1 cut(s)	1174
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	5 cut(s)	50, 110, 132, 293, 350
BsmAI	GTCTC	2 cut(s)	808, 935
BsmBI	CGTCTC	1 cut(s)	808
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	275, 967
Bsp13I	TCCGGA	1 cut(s)	1173
Bsp143I	GATC	5 cut(s)	517, 675, 700, 994, 1198
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	359, 1151
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	5 cut(s)	76, 358, 372, 394, 692
BspEI	TCCGGA	1 cut(s)	1173
BspLI	GGNNCC	4 cut(s)	432, 519, 832, 906
BspPI	GGATC	4 cut(s)	512, 525, 708, 1206
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	5 cut(s)	517, 675, 700, 994, 1198
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	901, 985
Bst6I	CTCTTC	1 cut(s)	1083
BstBAI	YACGTR	1 cut(s)	585
BstC8I	GCNNGC	4 cut(s)	252, 352, 356, 363
BstDEI	CTNAG	6 cut(s)	38, 63, 366, 380, 402, 679
BstDSI	CCRYGG	1 cut(s)	166
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstF5I	GGATG	3 cut(s)	319, 815, 1165
BstKTI	GATC	5 cut(s)	520, 678, 703, 997, 1201
BstMAI	GTCTC	2 cut(s)	808, 935
BstMBI	GATC	5 cut(s)	517, 675, 700, 994, 1198
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 407
BstNSI	RCATGY	2 cut(s)	192, 365
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	3 cut(s)	706, 1110, 1243
BstX2I	RGATCY	2 cut(s)	517, 1198
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	2 cut(s)	517, 1198
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	726
BtsCI	GGATG	3 cut(s)	319, 815, 1165
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	3 cut(s)	472, 906, 990
Cac8I	GCNNGC	4 cut(s)	252, 352, 356, 363
CseI	GACGC	1 cut(s)	699
CviAII	CATG	6 cut(s)	167, 189, 232, 362, 435, 462
DdeI	CTNAG	6 cut(s)	38, 63, 366, 380, 402, 679
DpnI	GATC	5 cut(s)	519, 677, 702, 996, 1200
DpnII	GATC	5 cut(s)	517, 675, 700, 994, 1198
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	1083
EarI	CTCTTC	1 cut(s)	1083
Ecl136II	GAGCTC	1 cut(s)	965
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	967
Eco32I	GATATC	1 cut(s)	1271
Eco53kI	GAGCTC	1 cut(s)	965
EcoICRI	GAGCTC	1 cut(s)	965
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	1271
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	967
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	808
FaeI	CATG	6 cut(s)	170, 192, 235, 365, 438, 465
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	6 cut(s)	166, 188, 231, 361, 434, 461
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	994
Fnu4HI	GCNGC	5 cut(s)	359, 720, 1124, 1151, 1232
FokI	GGATG	3 cut(s)	326, 802, 1172
FriOI	GRGCYC	1 cut(s)	967
Fsp4HI	GCNGC	5 cut(s)	359, 720, 1124, 1151, 1232
FspBI	CTAG	2 cut(s)	861, 956
GluI	GCNGC	5 cut(s)	359, 720, 1124, 1151, 1232
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	1174
HgaI	GACGC	1 cut(s)	699
Hin1II	CATG	6 cut(s)	170, 192, 235, 365, 438, 465
HindIII	AAGCTT	2 cut(s)	80, 1003
HinfI	GANTC	3 cut(s)	94, 523, 649
HpaII	CCGG	1 cut(s)	1174
HphI	GGTGA	3 cut(s)	138, 332, 341
Hpy166II	GTNNAC	2 cut(s)	44, 273
Hpy188I	TCNGA	5 cut(s)	381, 509, 522, 668, 849
Hpy188III	TCNNGA	2 cut(s)	698, 1174
Hpy8I	GTNNAC	2 cut(s)	44, 273
HpyAV	CCTTC	5 cut(s)	136, 326, 707, 792, 1189
HpyCH4III	ACNGT	2 cut(s)	901, 985
HpyCH4IV	ACGT	3 cut(s)	584, 725, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 407
HpyF3I	CTNAG	6 cut(s)	38, 63, 366, 380, 402, 679
HpySE526I	ACGT	3 cut(s)	584, 725, 801
Hsp92II	CATG	6 cut(s)	170, 192, 235, 365, 438, 465
Kpn2I	TCCGGA	1 cut(s)	1173
Ksp22I	TGATCA	1 cut(s)	994
Kzo9I	GATC	5 cut(s)	517, 675, 700, 994, 1198
LmnI	GCTCC	3 cut(s)	247, 716, 830
Lsp1109I	GCAGC	3 cut(s)	706, 1110, 1243
LweI	GCATC	4 cut(s)	376, 545, 553, 754
MaeI	CTAG	2 cut(s)	861, 956
MaeII	ACGT	3 cut(s)	584, 725, 801
MaeIII	GTNAC	6 cut(s)	29, 184, 658, 734, 750, 1028
MalI	GATC	5 cut(s)	519, 677, 702, 996, 1200
MboI	GATC	5 cut(s)	517, 675, 700, 994, 1198
MboII	GAAGA	3 cut(s)	608, 1100, 1249
MfeI	CAATTG	2 cut(s)	528, 746
MflI	RGATCY	2 cut(s)	517, 1198
MhlI	GDGCHC	2 cut(s)	275, 967
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	7 cut(s)	528, 570, 599, 746, 1117, 1131, 1225
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	487
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	1173
MroXI	GAANNNNTTC	3 cut(s)	336, 653, 1092
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	158, 557, 1007, 1064
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	1153
MspI	CCGG	1 cut(s)	1174
MunI	CAATTG	2 cut(s)	528, 746
Mva1269I	GAATGC	1 cut(s)	412
MwoI	GCNNNNNNNGC	2 cut(s)	260, 407
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	5 cut(s)	517, 675, 700, 994, 1198
NlaIII	CATG	6 cut(s)	170, 192, 235, 365, 438, 465
NlaIV	GGNNCC	4 cut(s)	432, 519, 832, 906
NmuCI	GTSAC	2 cut(s)	184, 658
NspI	RCATGY	2 cut(s)	192, 365
PaeI	GCATGC	1 cut(s)	365
PciI	ACATGT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	3 cut(s)	336, 653, 1092
PfeI	GAWTC	3 cut(s)	94, 523, 649
PflMI	CCANNNNNTGG	2 cut(s)	50, 350
PkrI	GCNGC	5 cut(s)	360, 721, 1125, 1152, 1233
Ppu21I	YACGTR	1 cut(s)	585
PscI	ACATGT	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	967
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	432, 519, 832, 906
PsuI	RGATCY	2 cut(s)	517, 1198
SacI	GAGCTC	1 cut(s)	967
SaqAI	TTAA	4 cut(s)	158, 557, 1007, 1064
SatI	GCNGC	5 cut(s)	359, 720, 1124, 1151, 1232
Sau3AI	GATC	5 cut(s)	517, 675, 700, 994, 1198
SduI	GDGCHC	2 cut(s)	275, 967
SfaNI	GCATC	4 cut(s)	376, 545, 553, 754
SmlI	CTYRAG	2 cut(s)	1035, 1262
SmoI	CTYRAG	2 cut(s)	1035, 1262
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	7 cut(s)	528, 570, 599, 746, 1117, 1131, 1225
SsiI	CCGC	2 cut(s)	359, 1151
SspI	AATATT	2 cut(s)	868, 1025
SspMI	CTAG	2 cut(s)	861, 956
SstI	GAGCTC	1 cut(s)	967
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	901, 985
TaiI	ACGT	3 cut(s)	587, 728, 804
TaqI	TCGA	4 cut(s)	140, 674, 978, 1059
TasI	AATT	7 cut(s)	528, 570, 599, 746, 1117, 1131, 1225
TauI	GCSGC	2 cut(s)	361, 1153
TfiI	GAWTC	3 cut(s)	94, 523, 649
Tru1I	TTAA	4 cut(s)	158, 557, 1007, 1064
Tru9I	TTAA	4 cut(s)	158, 557, 1007, 1064
TscAI	CASTG	3 cut(s)	472, 906, 990
TseFI	GTSAC	2 cut(s)	184, 658
TseI	GCWGC	3 cut(s)	719, 1123, 1231
Tsp45I	GTSAC	2 cut(s)	184, 658
TspDTI	ATGAA	1 cut(s)	1176
TspRI	CASTG	3 cut(s)	472, 906, 990
Van91I	CCANNNNNTGG	2 cut(s)	50, 350
VneI	GTGCAC	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	130
XapI	RAATTY	2 cut(s)	1117, 1225
XceI	RCATGY	2 cut(s)	192, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmnI	GAANNNNTTC	3 cut(s)	336, 653, 1092
XspI	CTAG	2 cut(s)	861, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.