Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Reverse (-)

14107136 .. 14111891

Gene Structure 4756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22161.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCAAGCTCAACGACTTTCACTTCCAAGTTTCACTCTCTCTCCGACCAAAGTCTCACAATCAAACCATCGCTCCACCAAGATTTTGAGGTTGAAACCACATTCCAAATCTTGGTTTGGCAATTCCTCTAAAGTAATGTTCAAGCCCCCAACAGGTGTAAGAAACCATGGTGGTTTGGTTGGGATCAGGTGTGAAGTAGCACAACAAGAAGATAGAGATGATGAGTTTTATATGTGGAGGTGTGTGGAGCTTGCTAAAAAGGCTATTGGGCGTACTAGCCCTAATCCTATGGTGGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCTAAAGCTGGCCAACCACATGCTGAGGTGTTTGCTCTGAGAGATGCTGGAGAATTGGCTGAAAATGCAACTGCGTATGTGAGCTTGGAGCCATGTAATCACTACGGGAGAACTCCACCATGCACTGAAGCCCTAATTAAAGCCAAAGTTAAAAAGGTTGTGGTCGGAATGGTGGATCCAAATCCAATTGTAGCATCTAAGGGGTTGGATAGGTTAAGAGATGCAGGAATTCACGTTATAACAGGTGTAGAAGAAAAATTATGCAACAGACTAAATGAAGCTTATATTCATCATATGCTAACTGGAAATCCATTGGTCACTGCCAGATACTCTATCTCAGTCAATGGACACTTCTTAGATCAGCTTGGGGAAGGAGTTGATGGGCTTGGTGGTTACTACTCTGAACTGTTACAAGAATATGATGCGGTTGTACTTACGTCTGCCACAGTAACTAAGAACAACTCCCTTCCAGCATCACAGGAAGCCGGTGCTAATCAACCACTCCGGATTATAATAGCGAATGCTAGTTCTCCAATCCATATCCCCGAACTGACCATGGAACCAAGCGGTAAGCTAATAATCTTTGCAGACAACAAGTCAACAGTAGAAATAGAAAGCGCTCAAACAGGTATTCAAACTGTGGTGTTGGATCAAATAAATTTGAATGCTATTACGGAATACTGCAAATCTCAAGGATTCTGTAGTGTTTTGTTGGATTTAAGGGGAAATATAGGCGACTTTGAAAAGGTTCTCCAAGATGGTACTGAGCAGAAGTTACGAAAACTGGTGATTGAAGTATTGCCCATCTGGGATCAAGATGGGGGTGGGAATCTCCCTATTTCATTGAAGAGTCTAAGTAAGAGAGTAGAAGTAATGAATTTGCAGGCTAAAAGTTCAAGTCAGAGTGTTGTGCTTGAAGCATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

424

Amino Acids

46.11

Weight (kDa)

7.16

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	73 - 171	8e-21	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	74 - 176	8.6e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	581, 854
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	2 cut(s)	767, 909
AclWI	GGATC	5 cut(s)	191, 512, 525, 999, 1161
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	3 cut(s)	570, 1000, 1219
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	3 cut(s)	274, 774, 1105
AfeI	AGCGCT	1 cut(s)	961
AfiI	CCNNNNNNNGG	4 cut(s)	111, 152, 293, 350
AgsI	TTSAA	9 cut(s)	94, 142, 977, 1006, 1085, 1136, 1189, 1239, 1259
AhdI	GACNNNNNGTC	1 cut(s)	937
AluBI	AGCT	7 cut(s)	8, 250, 350, 426, 623, 706, 916
AluI	AGCT	7 cut(s)	8, 250, 350, 426, 623, 706, 916
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	5 cut(s)	191, 512, 525, 999, 1161
Aor13HI	TCCGGA	1 cut(s)	846
Aor51HI	AGCGCT	1 cut(s)	961
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	3 cut(s)	570, 1000, 1219
Asp700I	GAANNNNTTC	2 cut(s)	336, 1089
AspLEI	GCGC	1 cut(s)	962
AsuHPI	GGTGA	3 cut(s)	332, 341, 1141
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	366
BccI	CCATC	6 cut(s)	75, 308, 716, 1094, 1154, 1154
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	276, 867
BfmI	CTRYAG	1 cut(s)	1042
BfoI	RGCGCY	1 cut(s)	963
BmeRI	GACNNNNNGTC	1 cut(s)	937
BmiI	GGNNCC	3 cut(s)	432, 519, 903
BmsI	GCATC	5 cut(s)	376, 545, 553, 754, 824
BoxI	GACNNNNGTC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	1017
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	166, 897
BsaWI	WCCGGW	1 cut(s)	846
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 56, 86
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 152, 293, 350
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	2 cut(s)	649, 1131
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	166, 897
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	4 cut(s)	111, 152, 293, 350
BseMII	CTCAG	4 cut(s)	357, 371, 693, 1098
BseNI	ACTGG	2 cut(s)	649, 1131
BshFI	GGCC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	828, 847
BslI	CCNNNNNNNGG	4 cut(s)	111, 152, 293, 350
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	2 cut(s)	868, 1012
BsnI	GGCC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	846
Bsp143I	GATC	5 cut(s)	183, 517, 700, 991, 1153
Bsp19I	CCATGG	2 cut(s)	166, 897
BspACI	CCGC	2 cut(s)	767, 909
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	4 cut(s)	358, 372, 692, 1099
BspEI	TCCGGA	1 cut(s)	846
BspLI	GGNNCC	3 cut(s)	432, 519, 903
BspPI	GGATC	5 cut(s)	191, 512, 525, 999, 1161
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	2 cut(s)	649, 1131
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	166, 897
BssMI	GATC	5 cut(s)	183, 517, 700, 991, 1153
BssT1I	CCWWGG	2 cut(s)	166, 897
Bst4CI	ACNGT	4 cut(s)	750, 790, 946, 982
Bst6I	CTCTTC	1 cut(s)	1184
BstC8I	GCNNGC	4 cut(s)	6, 252, 352, 1227
BstDEI	CTNAG	8 cut(s)	366, 380, 540, 679, 697, 795, 1107, 1196
BstDSI	CCRYGG	2 cut(s)	166, 897
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	963
BstHHI	GCGC	1 cut(s)	962
BstKTI	GATC	5 cut(s)	186, 520, 703, 994, 1156
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	5 cut(s)	183, 517, 700, 991, 1153
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 407
BstNSI	RCATGY	1 cut(s)	365
BstPAI	GACNNNNGTC	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	1042
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	2 cut(s)	166, 897
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	465, 660
Cac8I	GCNNGC	4 cut(s)	6, 252, 352, 1227
CfoI	GCGC	1 cut(s)	962
Cfr10I	RCCGGY	1 cut(s)	827
Csp6I	GTAC	3 cut(s)	273, 773, 1104
CviAII	CATG	5 cut(s)	167, 362, 435, 462, 898
CviQI	GTAC	3 cut(s)	273, 773, 1104
DdeI	CTNAG	8 cut(s)	366, 380, 540, 679, 697, 795, 1107, 1196
DpnI	GATC	5 cut(s)	185, 519, 702, 993, 1155
DpnII	GATC	5 cut(s)	183, 517, 700, 991, 1153
DriI	GACNNNNNGTC	1 cut(s)	937
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	1184
Eam1105I	GACNNNNNGTC	1 cut(s)	937
EarI	CTCTTC	1 cut(s)	1184
Eco130I	CCWWGG	2 cut(s)	166, 897
Eco47III	AGCGCT	1 cut(s)	961
Eco57I	CTGAAG	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	166, 897
ErhI	CCWWGG	2 cut(s)	166, 897
FaeI	CATG	5 cut(s)	170, 365, 438, 465, 901
FatI	CATG	5 cut(s)	166, 361, 434, 461, 897
FauNDI	CATATG	1 cut(s)	636
FokI	GGATG	1 cut(s)	326
FspBI	CTAG	2 cut(s)	276, 867
GlaI	GCGC	1 cut(s)	961
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	963
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	828, 847
HhaI	GCGC	1 cut(s)	962
Hin1II	CATG	5 cut(s)	170, 365, 438, 465, 901
Hin6I	GCGC	1 cut(s)	960
HinP1I	GCGC	1 cut(s)	960
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	3 cut(s)	1038, 1171, 1192
HpaII	CCGG	2 cut(s)	828, 847
HphI	GGTGA	3 cut(s)	332, 341, 1141
Hpy166II	GTNNAC	1 cut(s)	942
Hpy188I	TCNGA	5 cut(s)	45, 381, 509, 745, 1245
Hpy188III	TCNNGA	2 cut(s)	847, 1157
Hpy8I	GTNNAC	1 cut(s)	942
HpyAV	CCTTC	3 cut(s)	326, 707, 818
HpyCH4III	ACNGT	4 cut(s)	750, 790, 946, 982
HpyCH4IV	ACGT	2 cut(s)	576, 779
HpyCH4V	TGCA	8 cut(s)	4, 410, 465, 566, 606, 929, 1026, 1225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 407
HpyF3I	CTNAG	8 cut(s)	366, 380, 540, 679, 697, 795, 1107, 1196
HpySE526I	ACGT	2 cut(s)	576, 779
Hsp92II	CATG	5 cut(s)	170, 365, 438, 465, 901
HspAI	GCGC	1 cut(s)	960
Kpn2I	TCCGGA	1 cut(s)	846
Kzo9I	GATC	5 cut(s)	183, 517, 700, 991, 1153
LmnI	GCTCC	3 cut(s)	77, 247, 430
LweI	GCATC	5 cut(s)	376, 545, 553, 754, 824
MaeI	CTAG	2 cut(s)	276, 867
MaeII	ACGT	2 cut(s)	576, 779
MaeIII	GTNAC	5 cut(s)	658, 734, 750, 790, 1116
MalI	GATC	5 cut(s)	185, 519, 702, 993, 1155
MboI	GATC	5 cut(s)	183, 517, 700, 991, 1153
MboII	GAAGA	3 cut(s)	221, 605, 1201
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	8 cut(s)	121, 395, 477, 528, 570, 599, 1000, 1219
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	1201
MmeI	TCCRAC	5 cut(s)	68, 487, 528, 969, 1035
MnlI	CCTC	4 cut(s)	81, 136, 231, 361
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	846
MroXI	GAANNNNTTC	2 cut(s)	336, 1089
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	480, 492, 557, 1061
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	2 cut(s)	828, 847
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	2 cut(s)	868, 1012
MwoI	GCNNNNNNNGC	2 cut(s)	260, 407
NcoI	CCATGG	2 cut(s)	166, 897
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	5 cut(s)	183, 517, 700, 991, 1153
NlaIII	CATG	5 cut(s)	170, 365, 438, 465, 901
NlaIV	GGNNCC	3 cut(s)	432, 519, 903
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	365
PctI	GAATGC	2 cut(s)	868, 1012
PdmI	GAANNNNTTC	2 cut(s)	336, 1089
PfeI	GAWTC	2 cut(s)	1038, 1171
PflMI	CCANNNNNTGG	1 cut(s)	111
PleI	GAGTC	1 cut(s)	1200
PpsI	GAGTC	1 cut(s)	1200
PshAI	GACNNNNGTC	1 cut(s)	50
PsiI	TTATAA	2 cut(s)	581, 854
PspN4I	GGNNCC	3 cut(s)	432, 519, 903
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	3 cut(s)	274, 774, 1105
RsaNI	GTAC	3 cut(s)	273, 773, 1104
SaqAI	TTAA	4 cut(s)	480, 492, 557, 1061
Sau3AI	GATC	5 cut(s)	183, 517, 700, 991, 1153
SchI	GAGTC	1 cut(s)	1201
SfaNI	GCATC	5 cut(s)	376, 545, 553, 754, 824
SfcI	CTRYAG	1 cut(s)	1042
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
Sse9I	AATT	8 cut(s)	121, 395, 477, 528, 570, 599, 1000, 1219
SsiI	CCGC	2 cut(s)	767, 909
SspMI	CTAG	2 cut(s)	276, 867
StyI	CCWWGG	2 cut(s)	166, 897
TaaI	ACNGT	4 cut(s)	750, 790, 946, 982
TaiI	ACGT	2 cut(s)	579, 782
TasI	AATT	8 cut(s)	121, 395, 477, 528, 570, 599, 1000, 1219
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	2 cut(s)	1038, 1171
Tru1I	TTAA	4 cut(s)	480, 492, 557, 1061
Tru9I	TTAA	4 cut(s)	480, 492, 557, 1061
TscAI	CASTG	2 cut(s)	472, 667
TseFI	GTSAC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	4 cut(s)	620, 633, 1173, 1232
TspGWI	ACGGA	1 cut(s)	1031
TspRI	CASTG	2 cut(s)	472, 667
Van91I	CCANNNNNTGG	1 cut(s)	111
XapI	RAATTY	3 cut(s)	570, 1000, 1219
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	2 cut(s)	336, 1089
XspI	CTAG	2 cut(s)	276, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.