Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

8699406 .. 8702494

Gene Structure 3089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1084500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCAAGTTCAAACACTTTCACTCCAGAGTTACACTCTCAGTCCACCCACTGTCTCGCTACCACAGCAACTTTCCAGTAAACTGTTGAGGTCGAATCCAAATTCAAATTCTGGGTTTTGCAATCCACTCAGAAGGATGTCCAAATCACCAAATGGTTTGAGAAGTCATGGTAAATCTGTTGGGGTCATGTGTGGAGTGGCACAAGACGCGGGTGCAGATGATGGGTTCTATATGAGGAGGTGTGTAGAGCTTGCAAGAAAGGCTATCGGGTGTACCAGCCCCAATCCTATGGTGGGTTGTGTTATTGTCAAGGATGGCAAGGTTGTTGGTGAAGGCTTTCACCCAAAAGCTGGCCAGCCGCATGCTGAGGTTTTTGCTCTGAGAGATGCTGGGGATTTGGCTGAAAATGCAACAGCATATGTGAGCTTGGAACCGTGCAATCACTATGGGAGAACACCACCATGCAGCGAAGCCCTAATTAAAGCCAAAGTGAAAAAAGTGGTGGTTGGAATGGTGGATCCGAATCCAATCGTGGCATCGAAGGGGTTGGATAGATTAAGAGATGTTGGAATTGATGTTACTACGGGTGTAGAAGAAGAACTATGCAAGAGGCTAAATGAGGCTTATATCCATCGCATGCTAACAGGGAATCCTTTCGTCACTATCCGATACTCGATGTCAGTCAATGGACACTTTCTGGATCAGCTTGGACAAGGAGTTGCCGAGTCTGGTGGTTACTATTCGCAATTGTTACAAGAATATGATGCAGTTATTCTTTCTTCTTCCGCAATAATGGAGAACGTCTCTATTCCAGCGTCCCAAGAAGCTGGAGCCAATCAACCACTTCAGATTATAATAGCTAGGGATAGTAGTTCTCCAATCAAAATCCCTGCTCTCACCGTGGAACCAACTGATAAGCTAATAGTCTTTGCAGACAAAGAGACATCGGTAGAACTAGAAAGAGCTCAAACAGGTATTGAAATGGTGGTGTTCGATCAAATAAGCTTAAGTGCTATTTTGGAATACTGTAACTCTCAAGGAATGTGTAGTGTTTTGTTCGATTTAAAGGGAAACGTAAGTGATTTTGAAGAGCTTCTCCAAGACGGCATTGAACAGAAATTGGTGCAAAAAATTGTGGTAGAAGTATTGCCCCTGTGGGATGAAAATGGTGTCAGGAACTTTCCTGTTGCATTGAAGAGTCTGAGTAAAAGAGTAGAACTGAAGAATTTGCAGCCTAAGATTTCAAATGAGAATGTTGTGCTTGAGGGATATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

426

Amino Acids

46.17

Weight (kDa)

5.55

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	75 - 171	1.8e-20	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	76 - 176	1.4e-08	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccII	CGCG	1 cut(s)	209
AciI	CCGC	3 cut(s)	209, 359, 786
AclWI	GGATC	3 cut(s)	512, 525, 708
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	3 cut(s)	100, 106, 1225
AcuI	CTGAAG	2 cut(s)	830, 1241
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	293, 350
AflII	CTTAAG	1 cut(s)	1006
AgsI	TTSAA	7 cut(s)	11, 105, 980, 1088, 1112, 1195, 1245
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	3 cut(s)	58, 808, 935
AlwI	GGATC	3 cut(s)	512, 525, 708
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	465, 1231
ApoI	RAATTY	3 cut(s)	100, 106, 1225
Asp700I	GAANNNNTTC	3 cut(s)	336, 653, 1092
AsuHPI	GGTGA	4 cut(s)	138, 332, 341, 889
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	967
Bbv12I	GWGCWC	1 cut(s)	967
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	477, 1243
BccI	CCATC	3 cut(s)	215, 308, 639
BceAI	ACGGC	1 cut(s)	1120
BcoDI	GTCTC	3 cut(s)	58, 808, 935
BfaI	CTAG	2 cut(s)	861, 956
BfrI	CTTAAG	1 cut(s)	1006
BisI	GCNGC	3 cut(s)	359, 466, 1232
BlsI	GCNGC	3 cut(s)	360, 467, 1233
BmiI	GGNNCC	4 cut(s)	432, 519, 832, 906
BmsI	GCATC	3 cut(s)	376, 545, 754
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 788, 820
BpmI	CTGGAG	2 cut(s)	8, 849
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	1020
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	900
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 350
Bse1I	ACTGG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	3 cut(s)	141, 319, 1165
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	293, 350
BseMII	CTCAG	5 cut(s)	52, 142, 357, 371, 1193
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	477, 1243
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	967
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	2 cut(s)	293, 350
BsmAI	GTCTC	3 cut(s)	58, 808, 935
BsmBI	CGTCTC	1 cut(s)	808
BsmFI	GGGAC	1 cut(s)	802
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	3 cut(s)	517, 700, 994
BspACI	CCGC	3 cut(s)	209, 359, 786
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	5 cut(s)	51, 141, 358, 372, 1194
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	4 cut(s)	432, 519, 832, 906
BspPI	GGATC	3 cut(s)	512, 525, 708
BspQI	GCTCTTC	1 cut(s)	1083
BspTI	CTTAAG	1 cut(s)	1006
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	3 cut(s)	517, 700, 994
Bst4CI	ACNGT	5 cut(s)	52, 84, 435, 901, 1028
Bst6I	CTCTTC	2 cut(s)	1083, 1190
BstAFI	CTTAAG	1 cut(s)	1006
BstC8I	GCNNGC	5 cut(s)	252, 352, 356, 363, 638
BstDEI	CTNAG	6 cut(s)	38, 128, 366, 380, 1202, 1236
BstDSI	CCRYGG	1 cut(s)	900
BstF5I	GGATG	3 cut(s)	141, 319, 1165
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	3 cut(s)	520, 703, 997
BstMAI	GTCTC	3 cut(s)	58, 808, 935
BstMBI	GATC	3 cut(s)	517, 700, 994
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 206, 260, 407
BstNSI	RCATGY	2 cut(s)	365, 640
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	477, 1243
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	2 cut(s)	289, 827
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	900
BtgZI	GCGATG	1 cut(s)	617
BtsCI	GGATG	3 cut(s)	141, 319, 1165
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	5 cut(s)	252, 352, 356, 363, 638
CseI	GACGC	2 cut(s)	215, 804
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	5 cut(s)	167, 187, 362, 462, 637
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	6 cut(s)	38, 128, 366, 380, 1202, 1236
DpnI	GATC	3 cut(s)	519, 702, 996
DpnII	GATC	3 cut(s)	517, 700, 994
DraI	TTTAAA	1 cut(s)	1065
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	1083, 1190
EarI	CTCTTC	2 cut(s)	1083, 1190
Ecl136II	GAGCTC	1 cut(s)	965
Eco24I	GRGCYC	1 cut(s)	967
Eco32I	GATATC	1 cut(s)	1271
Eco53kI	GAGCTC	1 cut(s)	965
Eco57I	CTGAAG	2 cut(s)	830, 1241
EcoICRI	GAGCTC	1 cut(s)	965
EcoRV	GATATC	1 cut(s)	1271
EcoT38I	GRGCYC	1 cut(s)	967
Esp3I	CGTCTC	1 cut(s)	808
FaeI	CATG	5 cut(s)	170, 190, 365, 465, 640
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	5 cut(s)	166, 186, 361, 461, 636
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	359, 466, 1232
FokI	GGATG	3 cut(s)	148, 326, 1172
FriOI	GRGCYC	1 cut(s)	967
Fsp4HI	GCNGC	3 cut(s)	359, 466, 1232
FspBI	CTAG	2 cut(s)	861, 956
GluI	GCNGC	3 cut(s)	359, 466, 1232
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	2 cut(s)	8, 849
HaeIII	GGCC	1 cut(s)	354
HgaI	GACGC	2 cut(s)	215, 804
Hin1II	CATG	5 cut(s)	170, 190, 365, 465, 640
HindIII	AAGCTT	1 cut(s)	1003
HinfI	GANTC	5 cut(s)	94, 523, 649, 725, 1198
HphI	GGTGA	4 cut(s)	138, 332, 341, 889
Hpy166II	GTNNAC	3 cut(s)	44, 80, 273
Hpy188I	TCNGA	6 cut(s)	131, 381, 522, 668, 849, 1203
Hpy188III	TCNNGA	3 cut(s)	25, 698, 1174
Hpy8I	GTNNAC	3 cut(s)	44, 80, 273
HpyAV	CCTTC	3 cut(s)	126, 326, 535
HpyCH4III	ACNGT	5 cut(s)	52, 84, 435, 901, 1028
HpyCH4IV	ACGT	2 cut(s)	801, 1074
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 206, 260, 407
HpyF3I	CTNAG	6 cut(s)	38, 128, 366, 380, 1202, 1236
HpySE526I	ACGT	2 cut(s)	801, 1074
Hsp92II	CATG	5 cut(s)	170, 190, 365, 465, 640
Kzo9I	GATC	3 cut(s)	517, 700, 994
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	1 cut(s)	830
Lsp1109I	GCAGC	2 cut(s)	477, 1243
LweI	GCATC	3 cut(s)	376, 545, 754
MaeI	CTAG	2 cut(s)	861, 956
MaeII	ACGT	2 cut(s)	801, 1074
MaeIII	GTNAC	6 cut(s)	29, 577, 658, 734, 750, 1028
MalI	GATC	3 cut(s)	519, 702, 996
MboI	GATC	3 cut(s)	517, 700, 994
MboII	GAAGA	7 cut(s)	605, 608, 771, 774, 1100, 1207, 1234
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	967
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	8 cut(s)	100, 106, 477, 570, 746, 1118, 1131, 1225
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	734, 1207
MmeI	TCCRAC	3 cut(s)	487, 528, 547
MnlI	CCTC	7 cut(s)	81, 228, 231, 361, 603, 613, 1258
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	3 cut(s)	336, 653, 1092
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	480, 557, 1007, 1064
MslI	CAYNNNNRTG	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	354
MspCI	CTTAAG	1 cut(s)	1006
MunI	CAATTG	1 cut(s)	746
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	64, 206, 260, 407
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	517, 700, 994
NlaIII	CATG	5 cut(s)	170, 190, 365, 465, 640
NlaIV	GGNNCC	4 cut(s)	432, 519, 832, 906
NmeAIII	GCCGAG	1 cut(s)	748
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	2 cut(s)	365, 640
PaeI	GCATGC	2 cut(s)	365, 640
PciSI	GCTCTTC	1 cut(s)	1083
PdmI	GAANNNNTTC	3 cut(s)	336, 653, 1092
PfeI	GAWTC	3 cut(s)	94, 523, 649
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	360, 467, 1233
PleI	GAGTC	2 cut(s)	733, 1206
PpsI	GAGTC	2 cut(s)	733, 1206
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	967
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	432, 519, 832, 906
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	460
SacI	GAGCTC	1 cut(s)	967
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	4 cut(s)	480, 557, 1007, 1064
SatI	GCNGC	3 cut(s)	359, 466, 1232
Sau3AI	GATC	3 cut(s)	517, 700, 994
SchI	GAGTC	2 cut(s)	734, 1207
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	3 cut(s)	376, 545, 754
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	3 cut(s)	1006, 1035, 1262
SmoI	CTYRAG	3 cut(s)	1006, 1035, 1262
SphI	GCATGC	2 cut(s)	365, 640
Sse9I	AATT	8 cut(s)	100, 106, 477, 570, 746, 1118, 1131, 1225
SsiI	CCGC	3 cut(s)	209, 359, 786
SspMI	CTAG	2 cut(s)	861, 956
SstI	GAGCTC	1 cut(s)	967
TaaI	ACNGT	5 cut(s)	52, 84, 435, 901, 1028
TaiI	ACGT	2 cut(s)	804, 1077
TaqI	TCGA	5 cut(s)	92, 539, 674, 993, 1059
TasI	AATT	8 cut(s)	100, 106, 477, 570, 746, 1118, 1131, 1225
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	94, 523, 649
Tru1I	TTAA	4 cut(s)	480, 557, 1007, 1064
Tru9I	TTAA	4 cut(s)	480, 557, 1007, 1064
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	2 cut(s)	465, 1231
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	1 cut(s)	1176
TspRI	CASTG	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	1006
XapI	RAATTY	3 cut(s)	100, 106, 1225
XceI	RCATGY	2 cut(s)	365, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmnI	GAANNNNTTC	3 cut(s)	336, 653, 1092
XspI	CTAG	2 cut(s)	861, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.