Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

6150701 .. 6151620

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTGGATCCGAATCCAATCGTGGCATCAAAGGGGTTGGATAGATTAAGAGATGTTGGAATTGATGTTACTACCGGTGTAGAAGAAGAACTATGCAAAAGGCTAAATGAGGCTTATATCCATCGCATGCTAACGGGGAATCCTTTCGTCACTATCCGATACTCGATATCAGTCAATGGAAACTTTCTGGATCCGCTTGGACAAGGAGTTGCTGAGTCTGGTGGTTACTATTCGCAATTGTTGCAGGAATATGATGCAGTTATTCTTTCTTCTTCCGCAATAATGGAGAACGTCTCTATTCCAGCATCCCAAGAAGCTGGAGCCAATCAACCACTTCGGATTATAATAGCTAGGGATAGTACTTCTCCAATCAAAATCCCTGCTCTCACCGTGGAACCAACTGATAAGCTAATAGTCTTTGCAGACAAAGAGACATCAGTAGAACTAGAAAGAGCTCAAACAGGTATTGAAATGGTGGTGTTCGATCAAATAAGCTTAAGTGCTATTTTGGAATACTGTAACTCTCAAGGAATGTGTAGTGTTTTGTTCGATTTAAAGGGAAACGTAAGTGATTTTGAAGAGCTTCTCCAAGACGGCATTGAACAGAATTTGTTGCAAAAAATTGTGGTAGAAGTATTGCCCCTGTGGGATGAAAATGATGTCGGGAACTTTCCTGTTGCATTGAAGAGTCTGAGTAAAAGAGTGGAACTGAAGAATTTGCGGCCTAAGATTTCAAATGAGAATGTTGTGCTTGAGGGATATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

256

Amino Acids

28.09

Weight (kDa)

4.47

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AciI	CCGC	3 cut(s)	194, 276, 721
AclWI	GGATC	4 cut(s)	2, 15, 185, 198
AcsI	RAATTY	2 cut(s)	607, 715
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	1 cut(s)	361
AflII	CTTAAG	1 cut(s)	496
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	470, 578, 602, 685, 735
AluBI	AGCT	6 cut(s)	317, 350, 409, 455, 495, 583
AluI	AGCT	6 cut(s)	317, 350, 409, 455, 495, 583
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	298, 425
AlwI	GGATC	4 cut(s)	2, 15, 185, 198
AoxI	GGCC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	607, 715
AsiGI	ACCGGT	1 cut(s)	74
Asp700I	GAANNNNTTC	2 cut(s)	143, 582
AsuHPI	GGTGA	1 cut(s)	379
BamHI	GGATCC	2 cut(s)	7, 190
BanII	GRGCYC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	457
BccI	CCATC	1 cut(s)	129
BceAI	ACGGC	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	298, 425
BfaI	CTAG	2 cut(s)	351, 446
BfrI	CTTAAG	1 cut(s)	496
BisI	GCNGC	1 cut(s)	722
BlsI	GCNGC	1 cut(s)	723
BmcAI	AGTACT	1 cut(s)	361
BmiI	GGNNCC	4 cut(s)	9, 192, 322, 396
BmsI	GCATC	3 cut(s)	35, 244, 314
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	305, 655
BseJI	GATNNNNATC	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	204, 683
BshFI	GGCC	1 cut(s)	724
BshTI	ACCGGT	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	298, 425
BsmBI	CGTCTC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	724
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	7, 190, 484
BspACI	CCGC	3 cut(s)	194, 276, 721
BspANI	GGCC	1 cut(s)	724
BspCNI	CTCAG	2 cut(s)	205, 684
BspLI	GGNNCC	4 cut(s)	9, 192, 322, 396
BspPI	GGATC	4 cut(s)	2, 15, 185, 198
BspQI	GCTCTTC	1 cut(s)	573
BspTI	CTTAAG	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	7, 190, 484
Bst4CI	ACNGT	2 cut(s)	391, 518
Bst6I	CTCTTC	2 cut(s)	573, 680
BstAFI	CTTAAG	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	213, 692, 726
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	305, 655
BstKTI	GATC	3 cut(s)	10, 193, 487
BstMAI	GTCTC	2 cut(s)	298, 425
BstMBI	GATC	3 cut(s)	7, 190, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	130
BstX2I	RGATCY	2 cut(s)	7, 190
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	2 cut(s)	7, 190
BsuRI	GGCC	1 cut(s)	724
BtgI	CCRYGG	1 cut(s)	390
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	305, 655
Cac8I	GCNNGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	360
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	1 cut(s)	127
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	213, 692, 726
DpnI	GATC	3 cut(s)	9, 192, 486
DpnII	GATC	3 cut(s)	7, 190, 484
DraI	TTTAAA	1 cut(s)	555
Eam1104I	CTCTTC	2 cut(s)	573, 680
EarI	CTCTTC	2 cut(s)	573, 680
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	457
Eco32I	GATATC	2 cut(s)	168, 761
Eco53kI	GAGCTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	455
EcoRV	GATATC	2 cut(s)	168, 761
EcoT38I	GRGCYC	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	1 cut(s)	130
FaiI	YATR	5 cut(s)	94, 117, 128, 252, 344
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	722
FokI	GGATG	2 cut(s)	292, 662
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	722
FspBI	CTAG	2 cut(s)	351, 446
GluI	GCNGC	1 cut(s)	722
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	724
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	493
HinfI	GANTC	4 cut(s)	13, 139, 215, 688
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	12, 158, 339, 693
Hpy188III	TCNNGA	2 cut(s)	188, 664
HpyCH4III	ACNGT	2 cut(s)	391, 518
HpyCH4IV	ACGT	2 cut(s)	291, 564
HpyCH4V	TGCA	6 cut(s)	96, 244, 257, 422, 616, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	3 cut(s)	213, 692, 726
HpySE526I	ACGT	2 cut(s)	291, 564
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	7, 190, 484
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	1 cut(s)	320
LweI	GCATC	3 cut(s)	35, 244, 314
MaeI	CTAG	2 cut(s)	351, 446
MaeII	ACGT	2 cut(s)	291, 564
MaeIII	GTNAC	4 cut(s)	67, 148, 224, 518
MalI	GATC	3 cut(s)	9, 192, 486
MboI	GATC	3 cut(s)	7, 190, 484
MboII	GAAGA	7 cut(s)	95, 98, 261, 264, 590, 697, 724
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	2 cut(s)	7, 190
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	5 cut(s)	60, 236, 607, 621, 715
MlyI	GAGTC	2 cut(s)	224, 697
MmeI	TCCRAC	2 cut(s)	18, 37
MnlI	CCTC	2 cut(s)	103, 748
MroXI	GAANNNNTTC	2 cut(s)	143, 582
MseI	TTAA	3 cut(s)	47, 497, 554
MspCI	CTTAAG	1 cut(s)	496
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	3 cut(s)	7, 190, 484
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	4 cut(s)	9, 192, 322, 396
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	130
PaeI	GCATGC	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	573
PdmI	GAANNNNTTC	2 cut(s)	143, 582
PfeI	GAWTC	2 cut(s)	13, 139
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	723
PleI	GAGTC	2 cut(s)	223, 696
PpsI	GAGTC	2 cut(s)	223, 696
PsiI	TTATAA	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	457
PspN4I	GGNNCC	4 cut(s)	9, 192, 322, 396
PsuI	RGATCY	2 cut(s)	7, 190
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	457
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	3 cut(s)	47, 497, 554
SatI	GCNGC	1 cut(s)	722
Sau3AI	GATC	3 cut(s)	7, 190, 484
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	2 cut(s)	224, 697
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	9 cut(s)	294, 319, 352, 411, 457, 466, 497, 567, 585
SfaNI	GCATC	3 cut(s)	35, 244, 314
SmlI	CTYRAG	3 cut(s)	496, 525, 752
SmoI	CTYRAG	3 cut(s)	496, 525, 752
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	5 cut(s)	60, 236, 607, 621, 715
SsiI	CCGC	3 cut(s)	194, 276, 721
SspMI	CTAG	2 cut(s)	351, 446
SstI	GAGCTC	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	391, 518
TaiI	ACGT	2 cut(s)	294, 567
TaqI	TCGA	3 cut(s)	164, 483, 549
TasI	AATT	5 cut(s)	60, 236, 607, 621, 715
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	2 cut(s)	13, 139
Tru1I	TTAA	3 cut(s)	47, 497, 554
Tru9I	TTAA	3 cut(s)	47, 497, 554
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	666
Vha464I	CTTAAG	1 cut(s)	496
XapI	RAATTY	2 cut(s)	607, 715
XceI	RCATGY	1 cut(s)	130
XmnI	GAANNNNTTC	2 cut(s)	143, 582
XspI	CTAG	2 cut(s)	351, 446
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.