Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Reverse (-)

26971376 .. 26972117

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1227600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATACCTTATTCGAGCCGTGATGTCTTTGATTGTTGTGCTGTATACTCAATCTCAGTCAATGGACGCTTTCTGGATCAGCTTGGGGAAGGAGCTGCCAAGTCTGGTGGTTACTATTCGCAATTGTTACAGGAATATGATGCAGTTATTCTTTCTCCTTCCTCAATAATGGAGAACGTCTCTATTCCCGCATCCAAAGAAGCTGGAGCCAATCAACCACTTCGGATTATAATAGCTAGGAATATTAGTTCTCCAATCAAAATCTCTGCTCTCACAGTGGAACCCACAGATAAGCTAATGGTCTTTGCAGACAAGGAGACATCGGTAGAACTAGAGAGAGCTCAAACAGGCATCGAAACAGTGGTGTTTGATCAAATAAGGTTAAGTGCTATTTTGGAATACTGTAACTCTCAAGGAATGTGTAGTGTTTTGTTCGACTTAAAAGGAAATGTTAGTGATTTTGAAGAGTTTCTCCGAGATGGTATTGAGCAGAATTTGCTGCAAAAAATTGTGGTAGAAGTATTGCCGCTGTGGGATGAAAATGATGTCGGGAACTTTCCTGTTGCATTGAAGGATCTGAGCAAAAGACTGAAAGTGGAGAATTTGCAGCCTAAGATTTCAAATGAGAGTGTTGTGCTTGAGGGGTATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

218

Amino Acids

24.0

Weight (kDa)

4.5

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	189, 527
AclWI	GGATC	2 cut(s)	84, 582
AcsI	RAATTY	2 cut(s)	493, 601
AgsI	TTSAA	3 cut(s)	464, 571, 621
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
AluBI	AGCT	6 cut(s)	82, 95, 203, 236, 295, 341
AluI	AGCT	6 cut(s)	82, 95, 203, 236, 295, 341
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	184, 311
AlwI	GGATC	2 cut(s)	84, 582
ApeKI	GCWGC	3 cut(s)	95, 499, 607
ApoI	RAATTY	2 cut(s)	493, 601
Asp700I	GAANNNNTTC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	3 cut(s)	82, 486, 619
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	3
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	184, 311
BfaI	CTAG	2 cut(s)	237, 332
BisI	GCNGC	4 cut(s)	96, 500, 527, 608
BlsI	GCNGC	4 cut(s)	97, 501, 528, 609
BmiI	GGNNCC	2 cut(s)	208, 282
BmsI	GCATC	3 cut(s)	130, 200, 360
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	191, 541
BseMII	CTCAG	2 cut(s)	69, 569
BseXI	GCAGC	3 cut(s)	82, 486, 619
BsiHKAI	GWGCWC	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	184, 311
BsmBI	CGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	76, 370, 574
BspACI	CCGC	2 cut(s)	189, 527
BspCNI	CTCAG	2 cut(s)	68, 570
BspLI	GGNNCC	2 cut(s)	208, 282
BspPI	GGATC	2 cut(s)	84, 582
BssMI	GATC	3 cut(s)	76, 370, 574
BssNAI	GTATAC	1 cut(s)	46
Bst1107I	GTATAC	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	277, 361, 404
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	55, 578, 612
BstF5I	GGATG	2 cut(s)	191, 541
BstKTI	GATC	3 cut(s)	79, 373, 577
BstMAI	GTCTC	2 cut(s)	184, 311
BstMBI	GATC	3 cut(s)	76, 370, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstV1I	GCAGC	3 cut(s)	82, 486, 619
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BstZ17I	GTATAC	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	191, 541
BtsIMutI	CAGTG	2 cut(s)	282, 366
CseI	GACGC	1 cut(s)	75
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviJI	RGCY	9 cut(s)	18, 82, 95, 203, 209, 236, 295, 341, 610
CviKI_1	RGCY	9 cut(s)	18, 82, 95, 203, 209, 236, 295, 341, 610
DdeI	CTNAG	3 cut(s)	55, 578, 612
DpnI	GATC	3 cut(s)	78, 372, 576
DpnII	GATC	3 cut(s)	76, 370, 574
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	184
FaiI	YATR	3 cut(s)	46, 138, 230
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	96, 500, 527, 608
FokI	GGATG	2 cut(s)	178, 548
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	4 cut(s)	96, 500, 527, 608
FspBI	CTAG	2 cut(s)	237, 332
GluI	GCNGC	4 cut(s)	96, 500, 527, 608
GsuI	CTGGAG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	225, 476, 579
Hpy188III	TCNNGA	2 cut(s)	74, 550
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	83, 168, 565
HpyCH4III	ACNGT	3 cut(s)	277, 361, 404
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	143, 308, 502, 566, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	3 cut(s)	55, 578, 612
HpySE526I	ACGT	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	76, 370, 574
LmnI	GCTCC	2 cut(s)	92, 206
LpnPI	CCDG	6 cut(s)	59, 90, 116, 189, 333, 573
Lsp1109I	GCAGC	3 cut(s)	82, 486, 619
LweI	GCATC	3 cut(s)	130, 200, 360
MaeI	CTAG	2 cut(s)	237, 332
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	110, 126, 404
MalI	GATC	3 cut(s)	78, 372, 576
MboI	GATC	3 cut(s)	76, 370, 574
MboII	GAAGA	1 cut(s)	476
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	4 cut(s)	122, 493, 507, 601
MnlI	CCTC	2 cut(s)	172, 634
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	2 cut(s)	383, 440
MspA1I	CMGCKG	1 cut(s)	529
MunI	CAATTG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeII	GATC	3 cut(s)	76, 370, 574
NlaIV	GGNNCC	2 cut(s)	208, 282
PdmI	GAANNNNTTC	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	97, 501, 528, 609
PsiI	TTATAA	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	208, 282
PsuI	RGATCY	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	383, 440
SatI	GCNGC	4 cut(s)	96, 500, 527, 608
Sau3AI	GATC	3 cut(s)	76, 370, 574
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	9 cut(s)	10, 84, 97, 180, 205, 238, 297, 343, 383
SfaNI	GCATC	3 cut(s)	130, 200, 360
SmlI	CTYRAG	2 cut(s)	411, 638
SmoI	CTYRAG	2 cut(s)	411, 638
Sse9I	AATT	4 cut(s)	122, 493, 507, 601
SsiI	CCGC	2 cut(s)	189, 527
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	2 cut(s)	237, 332
SstI	GAGCTC	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	277, 361, 404
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	14, 354, 435
TasI	AATT	4 cut(s)	122, 493, 507, 601
TauI	GCSGC	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	383, 440
Tru9I	TTAA	2 cut(s)	383, 440
TscAI	CASTG	2 cut(s)	282, 366
TseI	GCWGC	3 cut(s)	95, 499, 607
TspDTI	ATGAA	1 cut(s)	552
TspRI	CASTG	2 cut(s)	282, 366
XapI	RAATTY	2 cut(s)	493, 601
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	237, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.