Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004431.1

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

41995 .. 43869

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004431.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgtttaagtcaccagcaggtgtaagaaaccatggtggtttggttggggtcaggtgtgaagtagcacaacaagaagatagagacgatgggttttatatgaggaggtgtgtggagcttgcaagaaaggctattggacgtactagccccaatcctatggtcggttgtgttattgtcaaggatgggaaggttgttggtgaaggctttcaccctaaagctggccaaccacatgctgaggtttttgctctgagagatgctggagatttggctgaaaatgcaacagcttatgtgagcttggagccatgtaatcactatgggagaactccaccatgcactgaagccctaatcaaagccaaagttaaaagggtcgtggtcggaatggtggatccaaatccaattgtagcatcgaaggggttggatagattaagagatgcaggaattgatgttataacgggtgtagaagaaaaattatgcaagagactaagtgaggcttatatccatcatatgctaaccgggaatcctttcgtcactctcagatactctatctcagtcaatggacactttttagatcagcttggggaaggagttgctgagcttggtggttactactctcaattgttacaggaatatgatgcaattatactttcttctgccacagtaactgagaacaactctcttccagcatcacaagaagccggtgctaatcaaccgctccggattataatagcgagtagtagttcttcaatccaaatcccaggactgaccatggaaccaagcggtaagctaataatatttgcagacaatgagacagcagtagaactagaaagcactcaaacaggtattgaaactgtggtgttggatcagataaatttaaatgctattacagaatactgcaaatctcaaggattctgtagtgttttgttggatttaaggggaaatataggtgattttgaaaaggttctccaagatggtactgagcagaacttgcaaaaaattgtgatcgaagtattgcccatctgggatcaaagtgggggcggggatttccctattgcattgaagagtctgagtaaaagagtagaagtaaagaatttgcaggctaagatttcaaatcagaatgttgtgcttgaaggatatttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

378

Amino Acids

40.92

Weight (kDa)

5.31

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	446, 719
AarI	CACCTGC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	8
AccBSI	CCGCTC	1 cut(s)	709
AccIII	TCCGGA	1 cut(s)	711
AciI	CCGC	3 cut(s)	707, 774, 1032
AclWI	GGATC	4 cut(s)	377, 390, 864, 1026
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	865, 1084
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	2 cut(s)	139, 970
AfiI	CCNNNNNNNGG	2 cut(s)	158, 215
AgsI	TTSAA	6 cut(s)	741, 842, 950, 1054, 1104, 1124
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	7 cut(s)	115, 215, 281, 291, 571, 592, 781
AluI	AGCT	7 cut(s)	115, 215, 281, 291, 571, 592, 781
Alw26I	GTCTC	3 cut(s)	75, 469, 797
AlwI	GGATC	4 cut(s)	377, 390, 864, 1026
AlwNI	CAGNNNCTG	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	711
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	865, 1084
Asp700I	GAANNNNTTC	3 cut(s)	201, 518, 954
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	4 cut(s)	3, 197, 206, 953
BalI	TGGCCA	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	721, 753
BbvCI	CCTCAGC	1 cut(s)	231
BccI	CCATC	5 cut(s)	80, 173, 504, 959, 1019
BciT130I	CCWGG	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	75, 469, 797
BfaI	CTAG	2 cut(s)	141, 818
BfmI	CTRYAG	1 cut(s)	907
BfuAI	ACCTGC	1 cut(s)	8
BlpI	GCTNAGC	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	511, 753
BmiI	GGNNCC	3 cut(s)	297, 384, 768
BmrFI	CCNGG	2 cut(s)	511, 753
BmsI	GCATC	5 cut(s)	241, 410, 418, 619, 689
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	882
BpuMI	CCSGG	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	31, 751, 762
BsaWI	WCCGGW	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 215
Bse118I	RCCGGY	1 cut(s)	692
Bse8I	GATNNNNATC	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	3 cut(s)	31, 751, 762
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	158, 215
BseMII	CTCAG	8 cut(s)	222, 236, 544, 558, 579, 651, 963, 1052
BseRI	GAGGAG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	510, 693, 712
BslI	CCNNNNNNNGG	2 cut(s)	158, 215
BsmAI	GTCTC	3 cut(s)	75, 469, 797
BsmBI	CGTCTC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	711
Bsp143I	GATC	5 cut(s)	382, 565, 856, 996, 1018
Bsp1720I	GCTNAGC	1 cut(s)	588
Bsp19I	CCATGG	2 cut(s)	31, 762
BspACI	CCGC	3 cut(s)	707, 774, 1032
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	8 cut(s)	223, 237, 543, 557, 580, 652, 964, 1053
BspEI	TCCGGA	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	297, 384, 768
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	4 cut(s)	377, 390, 864, 1026
BsrBI	CCGCTC	1 cut(s)	709
BsrFI	RCCGGY	1 cut(s)	692
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	3 cut(s)	31, 751, 762
BssMI	GATC	5 cut(s)	382, 565, 856, 996, 1018
BssT1I	CCWWGG	2 cut(s)	31, 762
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	2 cut(s)	655, 847
Bst6I	CTCTTC	2 cut(s)	678, 1049
BstAPI	GCANNNNNTGC	1 cut(s)	982
BstC8I	GCNNGC	3 cut(s)	117, 217, 1092
BstDSI	CCRYGG	2 cut(s)	31, 762
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	5 cut(s)	385, 568, 859, 999, 1021
BstMAI	GTCTC	3 cut(s)	75, 469, 797
BstMBI	GATC	5 cut(s)	382, 565, 856, 996, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 272, 982
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	509, 751
BstSFI	CTRYAG	1 cut(s)	907
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	2 cut(s)	31, 762
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	3 cut(s)	117, 217, 1092
CaiI	CAGNNNCTG	1 cut(s)	659
Cfr10I	RCCGGY	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	138, 969
CviAII	CATG	5 cut(s)	32, 227, 300, 327, 763
CviQI	GTAC	2 cut(s)	138, 969
DpnI	GATC	5 cut(s)	384, 567, 858, 998, 1020
DpnII	GATC	5 cut(s)	382, 565, 856, 996, 1018
DraI	TTTAAA	1 cut(s)	870
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	678, 1049
EarI	CTCTTC	2 cut(s)	678, 1049
Eco130I	CCWWGG	2 cut(s)	31, 762
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	2 cut(s)	31, 762
ErhI	CCWWGG	2 cut(s)	31, 762
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	5 cut(s)	35, 230, 303, 330, 766
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FatI	CATG	5 cut(s)	31, 226, 299, 326, 762
FauI	CCCGC	1 cut(s)	1025
FauNDI	CATATG	1 cut(s)	501
FokI	GGATG	1 cut(s)	191
FspBI	CTAG	2 cut(s)	141, 818
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	3 cut(s)	510, 693, 712
Hin1II	CATG	5 cut(s)	35, 230, 303, 330, 766
HinfI	GANTC	3 cut(s)	514, 903, 1057
HpaII	CCGG	3 cut(s)	510, 693, 712
HphI	GGTGA	4 cut(s)	3, 197, 206, 953
Hpy188I	TCNGA	6 cut(s)	246, 374, 533, 861, 1062, 1110
Hpy188III	TCNNGA	1 cut(s)	712
HpyAV	CCTTC	5 cut(s)	178, 191, 400, 572, 1118
HpyCH4III	ACNGT	2 cut(s)	655, 847
HpyCH4IV	ACGT	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 272, 982
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	5 cut(s)	35, 230, 303, 330, 766
Kpn2I	TCCGGA	1 cut(s)	711
Kzo9I	GATC	5 cut(s)	382, 565, 856, 996, 1018
LmnI	GCTCC	3 cut(s)	112, 295, 714
LweI	GCATC	5 cut(s)	241, 410, 418, 619, 689
MaeI	CTAG	2 cut(s)	141, 818
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	5 cut(s)	9, 523, 599, 615, 655
MalI	GATC	5 cut(s)	384, 567, 858, 998, 1020
MbiI	CCGCTC	1 cut(s)	709
MboI	GATC	5 cut(s)	382, 565, 856, 996, 1018
MboII	GAAGA	6 cut(s)	86, 470, 636, 665, 729, 1066
MfeI	CAATTG	2 cut(s)	393, 611
MflI	RGATCY	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	8 cut(s)	393, 435, 464, 611, 633, 865, 990, 1084
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	1066
MmeI	TCCRAC	4 cut(s)	352, 393, 834, 900
MnlI	CCTC	4 cut(s)	93, 96, 226, 478
Mox20I	TGGCCA	1 cut(s)	219
MroI	TCCGGA	1 cut(s)	711
MroXI	GAANNNNTTC	3 cut(s)	201, 518, 954
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	5 cut(s)	6, 357, 422, 869, 926
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	3 cut(s)	510, 693, 712
MspR9I	CCNGG	2 cut(s)	511, 753
MunI	CAATTG	2 cut(s)	393, 611
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	3 cut(s)	125, 272, 982
NciI	CCSGG	1 cut(s)	511
NcoI	CCATGG	2 cut(s)	31, 762
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	5 cut(s)	382, 565, 856, 996, 1018
NlaIII	CATG	5 cut(s)	35, 230, 303, 330, 766
NlaIV	GGNNCC	3 cut(s)	297, 384, 768
NmuCI	GTSAC	2 cut(s)	9, 523
NspI	RCATGY	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	8
PdmI	GAANNNNTTC	3 cut(s)	201, 518, 954
PfeI	GAWTC	2 cut(s)	514, 903
PleI	GAGTC	1 cut(s)	1065
PpsI	GAGTC	1 cut(s)	1065
PsiI	TTATAA	2 cut(s)	446, 719
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	297, 384, 768
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	2 cut(s)	139, 970
RsaNI	GTAC	2 cut(s)	138, 969
SaqAI	TTAA	5 cut(s)	6, 357, 422, 869, 926
Sau3AI	GATC	5 cut(s)	382, 565, 856, 996, 1018
SchI	GAGTC	1 cut(s)	1066
ScrFI	CCNGG	2 cut(s)	511, 753
SfaNI	GCATC	5 cut(s)	241, 410, 418, 619, 689
SfcI	CTRYAG	1 cut(s)	907
SmiI	ATTTAAAT	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	897
SmoI	CTYRAG	1 cut(s)	897
Sse9I	AATT	8 cut(s)	393, 435, 464, 611, 633, 865, 990, 1084
SsiI	CCGC	3 cut(s)	707, 774, 1032
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	2 cut(s)	141, 818
StyD4I	CCNGG	2 cut(s)	509, 751
StyI	CCWWGG	2 cut(s)	31, 762
SwaI	ATTTAAAT	1 cut(s)	870
TaaI	ACNGT	2 cut(s)	655, 847
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	404, 999
TasI	AATT	8 cut(s)	393, 435, 464, 611, 633, 865, 990, 1084
TfiI	GAWTC	2 cut(s)	514, 903
Tru1I	TTAA	5 cut(s)	6, 357, 422, 869, 926
Tru9I	TTAA	5 cut(s)	6, 357, 422, 869, 926
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	9, 523
Tsp45I	GTSAC	2 cut(s)	9, 523
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	865, 1084
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	3 cut(s)	201, 518, 954
XspI	CTAG	2 cut(s)	141, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.