Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377067.1

Orthogroup ID

OG0003394

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 642

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

atactctatctcagtcaatggacactttttagatcagcttggggaaggagttgctgagcttggtggttactactctcaattgttacaggaatatgatgcaattatactttcttctgccacagtaactgagaacaactctcttccagcatcacaagaagccggtgctaatcaaccgctccggattataatagcgagtagtagttcttcaatccaaatcccaggactgaccatggaaccaagcggtaagctaataatatttgcagacaatgagacagcagtagaactagagagcactcaaacaggtattgaaactgtggtgttggatcagataaatttaaatgctattacagaatactgcaaatctcaaggattctgtagtgttttgttggatttaaggggaaatataggtgattttgaaaaggttctccaagatggtactgagcagaacttgcaaaaaattgtgatcgaagtattgcccatctgggatcaaagtgggggcggggatttccctattgcattgaagagtctgagtaaaagagtagaagtaaagaatttgcaggctaagatttcaaatcagaatgttgtgcttgaaggatatttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

RibD_C dCMP_cyt_deam_1

Protein Analysis

200

Amino Acids

21.59

Weight (kDa)

4.28

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20960
fragaria_vesca	FvH4_1g22161 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470 FvH4_7g08470
malus_domestica	MD02G1227600.v1.1 MD07G1084500.v1.1
prunus_persica	Prupe.2G112100_v2.0.a1
pyrus_communis	pycom02g19650 pycom07g06860
rosa_chinensis	RchiOBHm_Chr1g0343231 RchiOBHm_Chr2g0122991
rosa_laevigata	RLG00000018728 RLG00000028988
rosa_multiflora	Rmu_co8377067.1_g000001 Rmu_sc0004431.1_g000009 Rmu_sc0006993.1_g000006
rosa_roxburghii	Rroxscaffold_4G00310950
rosa_rugosa	Rorug01G0165900
rosa_samantha	Rh1AG181500 Rh1BG149700 Rh1CG168300 Rh1DG181600 Rh2AG302400 Rh2BG309900 Rh2DG326500 Rh7BG295600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	3 cut(s)	174, 241, 499
AclWI	GGATC	2 cut(s)	331, 493
AcsI	RAATTY	2 cut(s)	332, 551
AfaI	GTAC	1 cut(s)	437
AgsI	TTSAA	6 cut(s)	208, 309, 417, 521, 571, 591
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	38, 59, 248
AluI	AGCT	3 cut(s)	38, 59, 248
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	331, 493
AlwNI	CAGNNNCTG	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	332, 551
Asp700I	GAANNNNTTC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	2 cut(s)	426, 486
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	2 cut(s)	86, 156
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
Bpu1102I	GCTNAGC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	349
BsaJI	CCNNGG	2 cut(s)	218, 229
BsaWI	WCCGGW	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	218, 229
BseMII	CTCAG	5 cut(s)	25, 46, 118, 430, 519
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	160, 179
BsmAI	GTCTC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	32, 323, 463, 485
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	174, 241, 499
BspCNI	CTCAG	5 cut(s)	24, 47, 119, 431, 520
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	331, 493
BsrBI	CCGCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	218, 229
BssMI	GATC	4 cut(s)	32, 323, 463, 485
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	122, 314
Bst6I	CTCTTC	2 cut(s)	145, 516
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	6 cut(s)	11, 55, 127, 439, 528, 562
BstDSI	CCRYGG	1 cut(s)	229
BstKTI	GATC	4 cut(s)	35, 326, 466, 488
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	4 cut(s)	32, 323, 463, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	5 cut(s)	38, 59, 159, 248, 561
CviKI_1	RGCY	5 cut(s)	38, 59, 159, 248, 561
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	6 cut(s)	11, 55, 127, 439, 528, 562
DpnI	GATC	4 cut(s)	34, 325, 465, 487
DpnII	GATC	4 cut(s)	32, 323, 463, 485
DraI	TTTAAA	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	145, 516
EarI	CTCTTC	2 cut(s)	145, 516
Eco130I	CCWWGG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	233
FaiI	YATR	5 cut(s)	94, 105, 186, 231, 405
FatI	CATG	1 cut(s)	229
FauI	CCCGC	1 cut(s)	492
FspBI	CTAG	1 cut(s)	285
HapII	CCGG	2 cut(s)	160, 179
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	2 cut(s)	370, 524
HpaII	CCGG	2 cut(s)	160, 179
HphI	GGTGA	1 cut(s)	420
Hpy188I	TCNGA	3 cut(s)	328, 529, 577
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	39, 585
HpyCH4III	ACNGT	2 cut(s)	122, 314
HpyCH4V	TGCA	6 cut(s)	99, 261, 358, 452, 516, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	6 cut(s)	11, 55, 127, 439, 528, 562
Hsp92II	CATG	1 cut(s)	233
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	32, 323, 463, 485
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	9 cut(s)	72, 157, 173, 192, 205, 232, 286, 467, 543
LweI	GCATC	2 cut(s)	86, 156
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	66, 82, 122
MalI	GATC	4 cut(s)	34, 325, 465, 487
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	4 cut(s)	32, 323, 463, 485
MboII	GAAGA	4 cut(s)	103, 132, 196, 533
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	5 cut(s)	78, 100, 332, 457, 551
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	2 cut(s)	301, 367
MroI	TCCGGA	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	2 cut(s)	336, 393
MspI	CCGG	2 cut(s)	160, 179
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	4 cut(s)	32, 323, 463, 485
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	336, 393
Sau3AI	GATC	4 cut(s)	32, 323, 463, 485
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	6 cut(s)	40, 61, 250, 305, 410, 424
SfaNI	GCATC	2 cut(s)	86, 156
SfcI	CTRYAG	1 cut(s)	374
SmiI	ATTTAAAT	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	5 cut(s)	78, 100, 332, 457, 551
SsiI	CCGC	3 cut(s)	174, 241, 499
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	229
SwaI	ATTTAAAT	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	122, 314
TaqI	TCGA	1 cut(s)	466
TasI	AATT	5 cut(s)	78, 100, 332, 457, 551
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	336, 393
Tru9I	TTAA	2 cut(s)	336, 393
XapI	RAATTY	2 cut(s)	332, 551
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.