Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007106

Physical Location & Seq

Genomic Coordinates Forward (+)

11993955 .. 11996335

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACTGTTACGGAGGACGAAAAACCGGTTCTTGAGCTGCTGGTGAGAGTTGAAGACGACGATGAGAAAGGGCCTTATGTGAAATTGAGTGAGGTTTTAGAGAAAGGTCAAGAATCAGAGCAGGAGAAGGAAGAAGAAAAGACTGATTCGTCGCGGTTTTGGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTGTTGTGGGTTACATTTGGATCGGTCCATTGATCATGGATAAGGAGCTTATACCGCTTATACAATGGGAGATACGAACTTTTACACATCCTGTGTGTGGTCTTCTTGTTTTTGCATCAGTGGCGATATTTCCAACTATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTTTGGTTATGGCTATGGCTTTCTACTTATTATCTCAGCTGCAGCTGTTGGTGTTTCGCTACCTTACTTTATTGGACAACTCTTCTGCCACAAAATTCAAGGATGGCTAGAAAGATATCCTGATCAAGCAGCCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTCTATTAGTAACCTTAATCCGGATTTCTCCATTCCCTTACATTCTTTATAACTACTGTTCTGTAGCAACTCGTGTTAAGTATGGTCCTTACATCACGGGCTCTCTCTTAGGCATGGTGCCTGAGGTTTTTGTCGCAATCTACACAGGGATACTTGTAAGGACATTAGCAGAAGCATCTTCTGCAGAAGAACAGGGTCTCTCGGTAACACAGGTGATTCTCAACATTCTCGGCTTTTTAGCAACAGTGGCTACAACGATTCTCATCACAAAGTATGCGAAAAGACAGCTGGAGACGATGAAGAAAGAGGACGAAGCATTGTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

296

Amino Acids

33.19

Weight (kDa)

4.99

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VTT_dom	PF09335	118 - 238	1.5e-15	VTT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12450 AT4G12000 AT4G12000 AT4G12000 AT4G22850 AT4G22850
fragaria_vesca	FvH4_5g00960 FvH4_5g00960 FvH4_5g00960
malus_domestica	MD00G1071900.v1.1 MD04G1076400.v1.1
prunus_persica	Prupe.3G013400_v2.0.a1 Prupe.5G083300_v2.0.a1
pyrus_communis	pycom04g06750 pycom06g06560
rosa_chinensis	RchiOBHm_Chr7g0200421
rosa_laevigata	RLG00000003727
rosa_multiflora	Rmu_sc0000617.1_g000042
rosa_roxburghii	Rroxscaffold_3G00256010
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh7AG185500 Rh7BG188600 Rh7CG195800 Rh7DG189600
rosa_wichuraiana	Rw7G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AasI	GACNNNNNNGTC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	679
AccII	CGCG	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	582
AciI	CCGC	2 cut(s)	154, 263
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	305, 582
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	53, 488
AluBI	AGCT	7 cut(s)	37, 175, 256, 428, 434, 533, 850
AluI	AGCT	7 cut(s)	37, 175, 256, 428, 434, 533, 850
Alw26I	GTCTC	2 cut(s)	764, 848
AlwI	GGATC	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	582
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	6 cut(s)	37, 200, 428, 431, 518, 533
ApoI	RAATTY	1 cut(s)	483
AsiGI	ACCGGT	1 cut(s)	25
AspS9I	GGNCC	3 cut(s)	71, 233, 647
AsuHPI	GGTGA	4 cut(s)	55, 548, 551, 787
AvaII	GGWCC	2 cut(s)	233, 647
AxyI	CCTNAGG	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	633
BbsI	GAAGAC	2 cut(s)	60, 302
BbvI	GCAGC	6 cut(s)	24, 187, 415, 443, 520, 530
BccI	CCATC	3 cut(s)	364, 373, 486
BceAI	ACGGC	1 cut(s)	506
BciVI	GTATCC	1 cut(s)	705
BclI	TGATCA	2 cut(s)	240, 511
BcoDI	GTCTC	2 cut(s)	764, 848
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	3 cut(s)	429, 624, 744
BfuI	GTATCC	1 cut(s)	705
BisI	GCNGC	6 cut(s)	38, 201, 429, 432, 519, 534
BlsI	GCNGC	6 cut(s)	39, 202, 430, 433, 520, 535
Bme18I	GGWCC	2 cut(s)	233, 647
BmgT120I	GGNCC	3 cut(s)	71, 233, 647
BmiI	GGNNCC	1 cut(s)	681
BmsI	GCATC	2 cut(s)	332, 746
BpiI	GAAGAC	2 cut(s)	60, 302
BpmI	CTGGAG	1 cut(s)	872
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	824
BsaI	GGTCTC	1 cut(s)	764
BsaWI	WCCGGW	2 cut(s)	25, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 582
Bse118I	RCCGGY	1 cut(s)	25
Bse21I	CCTNAGG	1 cut(s)	684
Bse8I	GATNNNNATC	1 cut(s)	824
BseAI	TCCGGA	1 cut(s)	582
BseGI	GGATG	3 cut(s)	295, 390, 497
BseJI	GATNNNNATC	1 cut(s)	824
BseLI	CCNNNNNNNGG	2 cut(s)	305, 582
BseMII	CTCAG	2 cut(s)	438, 675
BseXI	GCAGC	6 cut(s)	24, 187, 415, 443, 520, 530
BseYI	CCCAGC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	679
BshTI	ACCGGT	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	26, 583
BslI	CCNNNNNNNGG	2 cut(s)	305, 582
BsmAI	GTCTC	2 cut(s)	764, 848
BsmBI	CGTCTC	1 cut(s)	848
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp13I	TCCGGA	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	228, 240, 511
BspACI	CCGC	2 cut(s)	154, 263
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	437, 676
BspEI	TCCGGA	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	681
BspMAI	CTGCAG	2 cut(s)	433, 748
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	3 cut(s)	228, 240, 511
BssSI	CACGAG	1 cut(s)	633
Bst2BI	CACGAG	1 cut(s)	633
Bst4CI	ACNGT	3 cut(s)	7, 620, 808
Bst6I	CTCTTC	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstDEI	CTNAG	3 cut(s)	424, 670, 684
BstF5I	GGATG	3 cut(s)	295, 390, 497
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	3 cut(s)	231, 243, 514
BstMAI	GTCTC	2 cut(s)	764, 848
BstMBI	GATC	3 cut(s)	228, 240, 511
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 206, 262, 329, 743, 809
BstSFI	CTRYAG	3 cut(s)	429, 624, 744
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	6 cut(s)	24, 187, 415, 443, 520, 530
BstV2I	GAAGAC	2 cut(s)	60, 302
BstXI	CCANNNNNNTGG	1 cut(s)	372
Bsu36I	CCTNAGG	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	3 cut(s)	295, 390, 497
BtsIMutI	CAGTG	2 cut(s)	333, 813
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	71, 233, 647
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	2 cut(s)	244, 676
DdeI	CTNAG	3 cut(s)	424, 670, 684
DpnI	GATC	3 cut(s)	230, 242, 513
DpnII	GATC	3 cut(s)	228, 240, 511
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	665
Eco31I	GGTCTC	1 cut(s)	764
Eco32I	GATATC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	233, 647
Eco81I	CCTNAGG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	665
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	2 cut(s)	247, 679
FatI	CATG	2 cut(s)	243, 675
FbaI	TGATCA	2 cut(s)	240, 511
Fnu4HI	GCNGC	6 cut(s)	38, 201, 429, 432, 519, 534
FokI	GGATG	3 cut(s)	282, 397, 504
FriOI	GRGCYC	1 cut(s)	665
Fsp4HI	GCNGC	6 cut(s)	38, 201, 429, 432, 519, 534
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	6 cut(s)	38, 201, 429, 432, 519, 534
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	872
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	26, 583
Hin1II	CATG	2 cut(s)	247, 679
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	4 cut(s)	113, 146, 778, 820
HpaII	CCGG	2 cut(s)	26, 583
HphI	GGTGA	4 cut(s)	55, 548, 551, 787
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	4 cut(s)	32, 110, 509, 583
Hpy99I	CGWCG	2 cut(s)	62, 154
HpyAV	CCTTC	2 cut(s)	121, 536
HpyCH4III	ACNGT	3 cut(s)	7, 620, 808
HpyCH4V	TGCA	5 cut(s)	203, 323, 431, 746, 886
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 206, 262, 329, 743, 809
HpyF3I	CTNAG	3 cut(s)	424, 670, 684
Hsp92II	CATG	2 cut(s)	247, 679
Kpn2I	TCCGGA	1 cut(s)	582
Ksp22I	TGATCA	2 cut(s)	240, 511
Kzo9I	GATC	3 cut(s)	228, 240, 511
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	6 cut(s)	24, 187, 415, 443, 520, 530
LweI	GCATC	2 cut(s)	332, 746
MaeI	CTAG	1 cut(s)	497
MaeIII	GTNAC	4 cut(s)	7, 218, 571, 766
MalI	GATC	3 cut(s)	230, 242, 513
MboI	GATC	3 cut(s)	228, 240, 511
MboII	GAAGA	9 cut(s)	65, 143, 146, 302, 344, 463, 732, 761, 874
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	4 cut(s)	83, 483, 547, 560
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	4 cut(s)	7, 85, 679, 862
MroI	TCCGGA	1 cut(s)	582
MseI	TTAA	3 cut(s)	527, 578, 639
MslI	CAYNNNNRTG	1 cut(s)	370
MspA1I	CMGCKG	3 cut(s)	428, 434, 850
MspI	CCGG	2 cut(s)	26, 583
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	6 cut(s)	197, 206, 262, 329, 743, 809
NdeII	GATC	3 cut(s)	228, 240, 511
NlaIII	CATG	2 cut(s)	247, 679
NlaIV	GGNNCC	1 cut(s)	681
NmeAIII	GCCGAG	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	113, 146, 778, 820
PinAI	ACCGGT	1 cut(s)	25
PkrI	GCNGC	6 cut(s)	39, 202, 430, 433, 520, 535
PsiI	TTATAA	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	3 cut(s)	71, 233, 647
PstI	CTGCAG	2 cut(s)	433, 748
PvuII	CAGCTG	3 cut(s)	428, 434, 850
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	527, 578, 639
SatI	GCNGC	6 cut(s)	38, 201, 429, 432, 519, 534
Sau3AI	GATC	3 cut(s)	228, 240, 511
Sau96I	GGNCC	3 cut(s)	71, 233, 647
SduI	GDGCHC	1 cut(s)	665
SfaNI	GCATC	2 cut(s)	332, 746
SfcI	CTRYAG	3 cut(s)	429, 624, 744
SinI	GGWCC	2 cut(s)	233, 647
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	83, 483, 547, 560
SsiI	CCGC	2 cut(s)	154, 263
SspMI	CTAG	1 cut(s)	497
TaaI	ACNGT	3 cut(s)	7, 620, 808
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	4 cut(s)	83, 483, 547, 560
TfiI	GAWTC	4 cut(s)	113, 146, 778, 820
Tru1I	TTAA	3 cut(s)	527, 578, 639
Tru9I	TTAA	3 cut(s)	527, 578, 639
TscAI	CASTG	2 cut(s)	333, 813
TseI	GCWGC	6 cut(s)	37, 200, 428, 431, 518, 533
TspDTI	ATGAA	1 cut(s)	875
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	333, 813
VpaK11BI	GGWCC	2 cut(s)	233, 647
XapI	RAATTY	1 cut(s)	483
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.