FvH4_5g00960

transmembrane protein 64-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007106
Physical Location & Seq
Forward (+)
566264 .. 568834
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00960.t3

Sequence Viewer

Length: 888 bp
ATGACATATGAGGAGATTGTTGATCGGAGAGAGGTGGTGTCGGAGATGATCGTCGGGATTGAGGATGATGAGAAGGCCAGAGGGGACTATGTGAAGCTGAGACACTGCCCTGAAGAGGAGGCTGAGGCTGAGGCGAAGGGAATTGGGATTGGGTGGTTGTGGTATTGGGTGAGGTTGGTGTTGCTGTTCATGTGCTTGGTGTTGTTGGCTGGGGTTTTTATCAAATGGGTTGGGCCTTTTTTGATGGATAAGGAGGTTATTCCAATGATTAACTGGGAAACAAAGACATTTAGTCCTCCAGTGCTTGCTATTCTGGTCTTTGCTTCTGTGGCATTGTTTCCTACGATTCTCTTACCATCTTCACCTTCTATGTGGGTGGCTGGAATGACTTTTGGTTATGGCTATGGATTTCTTCTAATTATATCAGCCGCAGCTATTGGAATATCACTTCCGTATTTTATTAGCTATCTTTTCTTCCATAAAATTCAGGGATGGTTAGAAAAGTATCCAAAGAGAGCTTCCATTCTAAGATCAGCTGGCGAAGGAAACTGGTTCCATCAGTTTCGAGCTGTAACATTAATCAGGGTTTCTCCATTCCCGTATATTATATATAACTACTGTGCAGTGGCAACCAATGTCAAGTATGGTCCGTACCTCTTTGGGTCTTTGGCAGGAATGGTTCCAGAAACATTTGTTGCCCTTTACACTGGGATCTTAATACGGACATTGGCAGATGCTTCACATGAACACCATGGCCTTTCAGCCCCACAGATAATCTTCAGTGTTGTTGGCTTCGCTTTGGCTGTGGCTACCACAATTTTCTTCACAGTGTATGCAAAAAAGCAGCTCAAAGAATTGCAGAAGGAAGATGAGCCACTGTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

296

Amino Acids

33.29

Weight (kDa)

6.09

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 118 - 235 1.1e-15 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 719
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 2 cut(s) 132, 763
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 1 cut(s) 115
AhdI GACNNNNNGTC 1 cut(s) 291
AjuI GAANNNNNNNTTGG 2 cut(s) 502, 534
AluBI AGCT 7 cut(s) 97, 434, 465, 518, 536, 569, 847
AluI AGCT 7 cut(s) 97, 434, 465, 518, 536, 569, 847
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 719
AoxI GGCC 3 cut(s) 75, 233, 754
ApeKI GCWGC 2 cut(s) 431, 844
ApoI RAATTY 1 cut(s) 483
AseI ATTAAT 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 233, 647
AsuHPI GGTGA 2 cut(s) 181, 354
AvaII GGWCC 1 cut(s) 647
BbvCI CCTCAGC 2 cut(s) 123, 129
BbvI GCAGC 2 cut(s) 443, 856
BccI CCATC 4 cut(s) 238, 364, 486, 564
BciVI GTATCC 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 94
BfuI GTATCC 1 cut(s) 516
BisI GCNGC 3 cut(s) 429, 432, 845
BlsI GCNGC 3 cut(s) 430, 433, 846
Bme18I GGWCC 1 cut(s) 647
BmeRI GACNNNNNGTC 1 cut(s) 291
BmgT120I GGNCC 2 cut(s) 233, 647
BmiI GGNNCC 2 cut(s) 554, 681
BmrI ACTGGG 2 cut(s) 283, 717
BmsI GCATC 1 cut(s) 724
BmuI ACTGGG 2 cut(s) 283, 717
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 2 cut(s) 123, 129
BsaJI CCNNGG 1 cut(s) 751
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 4 cut(s) 278, 299, 554, 712
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 2 cut(s) 70, 497
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 3 cut(s) 89, 114, 120
BseNI ACTGG 4 cut(s) 278, 299, 554, 712
BseRI GAGGAG 2 cut(s) 26, 131
BseXI GCAGC 2 cut(s) 443, 856
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 642
BshFI GGCC 3 cut(s) 77, 235, 756
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 3 cut(s) 77, 235, 756
Bsp143I GATC 4 cut(s) 22, 48, 530, 711
Bsp19I CCATGG 1 cut(s) 751
BspACI CCGC 1 cut(s) 429
BspANI GGCC 3 cut(s) 77, 235, 756
BspCNI CTCAG 3 cut(s) 90, 115, 121
BspLI GGNNCC 2 cut(s) 554, 681
BspPI GGATC 1 cut(s) 719
BsrI ACTGG 4 cut(s) 278, 299, 554, 712
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 4 cut(s) 22, 48, 530, 711
BssT1I CCWWGG 1 cut(s) 751
Bst4CI ACNGT 3 cut(s) 620, 829, 879
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 306, 538
BstDEI CTNAG 4 cut(s) 98, 123, 129, 527
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 2 cut(s) 70, 497
BstKTI GATC 4 cut(s) 25, 51, 533, 714
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 22, 48, 530, 711
BstMWI GCNNNNNNNGC 2 cut(s) 329, 880
BstV1I GCAGC 2 cut(s) 443, 856
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 3 cut(s) 77, 235, 756
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 2 cut(s) 70, 497
BtsI GCAGTG 2 cut(s) 103, 630
BtsIMutI CAGTG 7 cut(s) 103, 306, 630, 705, 787, 834, 875
Cac8I GCNNGC 2 cut(s) 306, 538
Cfr13I GGNCC 2 cut(s) 233, 647
Csp6I GTAC 1 cut(s) 652
CviAII CATG 3 cut(s) 190, 743, 752
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 4 cut(s) 98, 123, 129, 527
DpnI GATC 4 cut(s) 24, 50, 532, 713
DpnII GATC 4 cut(s) 22, 48, 530, 711
DriI GACNNNNNGTC 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 2 cut(s) 132, 763
EcoT14I CCWWGG 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 3 cut(s) 193, 746, 755
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 189, 742, 751
FauNDI CATATG 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 429, 432, 845
FokI GGATG 2 cut(s) 77, 504
Fsp4HI GCNGC 3 cut(s) 429, 432, 845
GluI GCNGC 3 cut(s) 429, 432, 845
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 3 cut(s) 77, 235, 756
Hin1II CATG 3 cut(s) 193, 746, 755
HinfI GANTC 1 cut(s) 346
HphI GGTGA 2 cut(s) 181, 354
Hpy188I TCNGA 2 cut(s) 27, 43
Hpy188III TCNNGA 2 cut(s) 55, 683
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 5 cut(s) 67, 130, 375, 536, 856
HpyCH4III ACNGT 3 cut(s) 620, 829, 879
HpyCH4V TGCA 4 cut(s) 623, 836, 859, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 880
HpyF3I CTNAG 4 cut(s) 98, 123, 129, 527
Hsp92II CATG 3 cut(s) 193, 746, 755
Kzo9I GATC 4 cut(s) 22, 48, 530, 711
Lsp1109I GCAGC 2 cut(s) 443, 856
LweI GCATC 1 cut(s) 724
MaeIII GTNAC 1 cut(s) 571
MalI GATC 4 cut(s) 24, 50, 532, 713
MboI GATC 4 cut(s) 22, 48, 530, 711
MboII GAAGA 7 cut(s) 125, 351, 404, 466, 769, 814, 878
MflI RGATCY 1 cut(s) 711
MluCI AATT 5 cut(s) 141, 417, 483, 816, 854
MmeI TCCRAC 1 cut(s) 21
MseI TTAA 3 cut(s) 270, 578, 716
MspA1I CMGCKG 1 cut(s) 536
MwoI GCNNNNNNNGC 2 cut(s) 329, 880
NcoI CCATGG 1 cut(s) 751
NdeI CATATG 1 cut(s) 7
NdeII GATC 4 cut(s) 22, 48, 530, 711
NlaIII CATG 3 cut(s) 193, 746, 755
NlaIV GGNNCC 2 cut(s) 554, 681
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 3 cut(s) 430, 433, 846
PshBI ATTAAT 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 554, 681
PspPI GGNCC 2 cut(s) 233, 647
PsuI RGATCY 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
SaqAI TTAA 3 cut(s) 270, 578, 716
SatI GCNGC 3 cut(s) 429, 432, 845
Sau3AI GATC 4 cut(s) 22, 48, 530, 711
Sau96I GGNCC 2 cut(s) 233, 647
SfaNI GCATC 1 cut(s) 724
SinI GGWCC 1 cut(s) 647
Sse9I AATT 5 cut(s) 141, 417, 483, 816, 854
SsiI CCGC 1 cut(s) 429
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 3 cut(s) 620, 829, 879
TaqI TCGA 1 cut(s) 565
TasI AATT 5 cut(s) 141, 417, 483, 816, 854
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 270, 578, 716
Tru9I TTAA 3 cut(s) 270, 578, 716
TscAI CASTG 7 cut(s) 110, 306, 630, 712, 787, 834, 882
TseI GCWGC 2 cut(s) 431, 844
TspDTI ATGAA 2 cut(s) 178, 759
TspGWI ACGGA 3 cut(s) 441, 639, 736
TspRI CASTG 7 cut(s) 110, 306, 630, 712, 787, 834, 882
VpaK11BI GGWCC 1 cut(s) 647
VspI ATTAAT 1 cut(s) 578
XapI RAATTY 1 cut(s) 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.