Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000617.1

Orthogroup ID

OG0007106

Physical Location & Seq

Genomic Coordinates Forward (+)

171666 .. 178218

Gene Structure 6553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000617.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

atgcttgctggcatgacggggatgatgggtggatggtggaatggccagcacttgcttggagcggcggacacgtcaacggtgattaggagaggtggtggtgctcgccgaaaactggagctgcgatcagggaggaggaaaagaaggccgaagagcagagaggaggaagaagaagaagaagagggtttttcgatgacctatgaggagaatgttgatcgaggagaggtggagccggagctgatcgtgagaattgggggcggtgaggatgatgagaaggggagaggggactatgtgaagctcagggagtgtcccggcgaggctgaggagtcggagccgtcgtcgtcttcgcccaagggattatggtgtttgtggtattgggttaggttggtgttgctgttcatgtgcttggggttgttggctggggtttttatcaaatgggtcgggccttttctgatggatacggaggtaattccaatgattaactgggagacgaaaacattcagtactccagtgcttgctattctggtctttgcttctgtggcattgtttcctaccatactattaccatcttcaccttctatgtgggtggctggaatgacttttggttatggctatggatttcttctcattatatcagcagcagctattggtatatcacttccatatttcattagctatctcttctaccataaaattcagggatggttagaaaaatatccaaagagagcttccattctaagatcagctggcgaaggaaactggtttcaccagtttcgagctgtagcattaatcaggatttctccattcccttatattatatataactactgtgctgtggcaaccaatgtcaagtatggtccgtacctcttggggtccttggcgggaatggaggtaattccaatgattaactgggagacgaaaacattcagtactccagtgcttgctattctggtctttgcttctgtggcattgtttcctaccatactattaccatcttcaccttctatgtgggtggctggaatgacttttggttatggctatggatttcttctcattatatcagcagcagctattggtatatcacttccatatttcattagctatctcttctaccataaaattcagggatggttagaaaaatatccaaagagagcttccattctaagatcagctggcgaaggaaactggtttcaccagtttcgagctgtagcattaatcaggatttctccattcccttatattatatataactactgtgctgtggcaaccaatgtcaagtatggtccgtacctcttggggtccttggcgggaatggttccagaaacatttgttgccatttacactgggatcttaatacggacattggcagatgcttcacatgagcaccacggcctttcagccccacagataatcttcactgttgttggctttgctttggctgtggctaccacaattttcttcacagtgtatgcaaaaaagcagctcaaggaattgcagaaggaagatgagccactgttgcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

506

Amino Acids

56.59

Weight (kDa)

8.38

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12450 AT4G12000 AT4G12000 AT4G12000 AT4G22850 AT4G22850
fragaria_vesca	FvH4_5g00960 FvH4_5g00960 FvH4_5g00960
malus_domestica	MD00G1071900.v1.1 MD04G1076400.v1.1
prunus_persica	Prupe.3G013400_v2.0.a1 Prupe.5G083300_v2.0.a1
pyrus_communis	pycom04g06750 pycom06g06560
rosa_chinensis	RchiOBHm_Chr7g0200421
rosa_laevigata	RLG00000003727
rosa_multiflora	Rmu_sc0000617.1_g000042
rosa_roxburghii	Rroxscaffold_3G00256010
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh7AG185500 Rh7BG188600 Rh7CG195800 Rh7DG189600
rosa_wichuraiana	Rw7G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	5 cut(s)	62, 65, 255, 878, 1304
AclWI	GGATC	1 cut(s)	1352
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	690, 1116
AfaI	GTAC	4 cut(s)	502, 860, 928, 1286
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	69
AjiI	CACGTC	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	4 cut(s)	709, 741, 1135, 1167
Alw21I	GWGCWC	2 cut(s)	103, 1383
Alw26I	GTCTC	2 cut(s)	479, 905
AlwI	GGATC	1 cut(s)	1352
AoxI	GGCC	4 cut(s)	43, 143, 440, 1387
ApeKI	GCWGC	6 cut(s)	118, 635, 638, 1061, 1064, 1477
ApoI	RAATTY	2 cut(s)	690, 1116
AseI	ATTAAT	2 cut(s)	785, 1211
Asp700I	GAANNNNTTC	2 cut(s)	494, 920
AspS9I	GGNCC	5 cut(s)	440, 854, 870, 1280, 1296
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	6 cut(s)	91, 269, 561, 755, 987, 1181
AvaII	GGWCC	4 cut(s)	854, 870, 1280, 1296
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BalI	TGGCCA	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	103, 1383
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	6 cut(s)	105, 647, 650, 1073, 1076, 1489
BccI	CCATC	7 cut(s)	19, 27, 445, 571, 693, 997, 1119
BceAI	ACGGC	2 cut(s)	316, 1402
BciVI	GTATCC	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	479, 905
BfmI	CTRYAG	2 cut(s)	777, 1203
BfuI	GTATCC	1 cut(s)	448
BisI	GCNGC	7 cut(s)	63, 119, 636, 639, 1062, 1065, 1478
BlsI	GCNGC	7 cut(s)	64, 120, 637, 640, 1063, 1066, 1479
BmcAI	AGTACT	2 cut(s)	502, 928
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	4 cut(s)	854, 870, 1280, 1296
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	5 cut(s)	440, 854, 870, 1280, 1296
BmiI	GGNNCC	5 cut(s)	228, 330, 871, 1297, 1314
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	3 cut(s)	490, 916, 1350
BmsI	GCATC	1 cut(s)	1357
BmuI	ACTGGG	3 cut(s)	490, 916, 1350
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	3 cut(s)	134, 489, 915
Bpu10I	CCTNAGC	2 cut(s)	296, 318
BpuEI	CTTGAG	1 cut(s)	1466
BpuMI	CCSGG	1 cut(s)	309
BsaJI	CCNNGG	4 cut(s)	348, 873, 1299, 1384
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseDI	CCNNGG	4 cut(s)	348, 873, 1299, 1384
BseGI	GGATG	5 cut(s)	27, 38, 268, 704, 1130
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	2 cut(s)	309, 310
BseRI	GAGGAG	5 cut(s)	145, 173, 215, 231, 335
BseXI	GCAGC	6 cut(s)	105, 647, 650, 1073, 1076, 1489
BseYI	CCCAGC	1 cut(s)	416
BshFI	GGCC	4 cut(s)	45, 145, 442, 1389
BsiHKAI	GWGCWC	2 cut(s)	103, 1383
BsiSI	CCGG	2 cut(s)	230, 309
BslFI	GGGAC	2 cut(s)	291, 296
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	479, 905
BsmBI	CGTCTC	2 cut(s)	479, 905
BsmFI	GGGAC	2 cut(s)	291, 296
BsnI	GGCC	4 cut(s)	45, 145, 442, 1389
Bsp1286I	GDGCHC	2 cut(s)	103, 1383
Bsp143I	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
BspACI	CCGC	5 cut(s)	62, 65, 255, 878, 1304
BspANI	GGCC	4 cut(s)	45, 145, 442, 1389
BspCNI	CTCAG	2 cut(s)	309, 310
BspLI	GGNNCC	5 cut(s)	228, 330, 871, 1297, 1314
BspPI	GGATC	1 cut(s)	1352
BspQI	GCTCTTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	348, 873, 1299, 1384
BssMI	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
BssT1I	CCWWGG	3 cut(s)	348, 873, 1299
Bst4CI	ACNGT	6 cut(s)	79, 827, 1253, 1417, 1462, 1512
Bst6I	CTCTTC	4 cut(s)	143, 171, 683, 1109
BstC8I	GCNNGC	8 cut(s)	6, 10, 47, 103, 513, 745, 939, 1171
BstDEI	CTNAG	4 cut(s)	296, 318, 734, 1160
BstDSI	CCRYGG	1 cut(s)	1384
BstF5I	GGATG	5 cut(s)	27, 38, 268, 704, 1130
BstKTI	GATC	6 cut(s)	125, 214, 240, 740, 1166, 1347
BstMAI	GTCTC	2 cut(s)	479, 905
BstMBI	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
BstMWI	GCNNNNNNNGC	3 cut(s)	536, 962, 1513
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	777, 1203
BstV1I	GCAGC	6 cut(s)	105, 647, 650, 1073, 1076, 1489
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	1344
BstYI	RGATCY	1 cut(s)	1344
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	4 cut(s)	45, 145, 442, 1389
BtgI	CCRYGG	1 cut(s)	1384
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	27, 38, 268, 704, 1130
BtsIMutI	CAGTG	6 cut(s)	513, 939, 1338, 1413, 1467, 1508
Cac8I	GCNNGC	8 cut(s)	6, 10, 47, 103, 513, 745, 939, 1171
Cfr13I	GGNCC	5 cut(s)	440, 854, 870, 1280, 1296
Csp6I	GTAC	4 cut(s)	501, 859, 927, 1285
CviAII	CATG	3 cut(s)	13, 397, 1376
CviQI	GTAC	4 cut(s)	501, 859, 927, 1285
DdeI	CTNAG	4 cut(s)	296, 318, 734, 1160
DpnI	GATC	6 cut(s)	124, 213, 239, 739, 1165, 1346
DpnII	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	143, 171, 683, 1109
EarI	CTCTTC	4 cut(s)	143, 171, 683, 1109
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	3 cut(s)	348, 873, 1299
Eco47I	GGWCC	4 cut(s)	854, 870, 1280, 1296
EcoO109I	RGGNCCY	2 cut(s)	870, 1296
EcoT14I	CCWWGG	3 cut(s)	348, 873, 1299
ErhI	CCWWGG	3 cut(s)	348, 873, 1299
Esp3I	CGTCTC	2 cut(s)	479, 905
FaeI	CATG	3 cut(s)	16, 400, 1379
FaqI	GGGAC	2 cut(s)	291, 296
FatI	CATG	3 cut(s)	12, 396, 1375
FauI	CCCGC	2 cut(s)	871, 1297
Fnu4HI	GCNGC	7 cut(s)	63, 119, 636, 639, 1062, 1065, 1478
FokI	GGATG	5 cut(s)	34, 45, 275, 711, 1137
Fsp4HI	GCNGC	7 cut(s)	63, 119, 636, 639, 1062, 1065, 1478
GluI	GCNGC	7 cut(s)	63, 119, 636, 639, 1062, 1065, 1478
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	3 cut(s)	134, 489, 915
HaeIII	GGCC	4 cut(s)	45, 145, 442, 1389
HapII	CCGG	2 cut(s)	230, 309
Hin1II	CATG	3 cut(s)	16, 400, 1379
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	2 cut(s)	230, 309
HphI	GGTGA	6 cut(s)	91, 269, 561, 755, 987, 1181
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	328, 450
Hpy188III	TCNNGA	4 cut(s)	241, 790, 1216, 1316
Hpy8I	GTNNAC	1 cut(s)	75
Hpy99I	CGWCG	2 cut(s)	337, 340
HpyAV	CCTTC	7 cut(s)	135, 265, 582, 743, 1008, 1169, 1489
HpyCH4III	ACNGT	6 cut(s)	79, 827, 1253, 1417, 1462, 1512
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	3 cut(s)	1469, 1492, 1516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	536, 962, 1513
HpyF3I	CTNAG	4 cut(s)	296, 318, 734, 1160
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	16, 400, 1379
Kzo9I	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	5 cut(s)	59, 115, 226, 232, 328
Lsp1109I	GCAGC	6 cut(s)	105, 647, 650, 1073, 1076, 1489
LweI	GCATC	1 cut(s)	1357
MaeII	ACGT	1 cut(s)	71
MalI	GATC	6 cut(s)	124, 213, 239, 739, 1165, 1346
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
MflI	RGATCY	1 cut(s)	1344
MhlI	GDGCHC	2 cut(s)	103, 1383
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	7 cut(s)	246, 465, 690, 891, 1116, 1449, 1487
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	306
Mox20I	TGGCCA	1 cut(s)	45
MroXI	GAANNNNTTC	2 cut(s)	494, 920
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	5 cut(s)	477, 785, 903, 1211, 1349
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	743, 1169
MspI	CCGG	2 cut(s)	230, 309
MspR9I	CCNGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	536, 962, 1513
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
NlaIII	CATG	3 cut(s)	16, 400, 1379
NlaIV	GGNNCC	5 cut(s)	228, 330, 871, 1297, 1314
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdmI	GAANNNNTTC	2 cut(s)	494, 920
PkrI	GCNGC	7 cut(s)	64, 120, 637, 640, 1063, 1066, 1479
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	2 cut(s)	870, 1296
PshBI	ATTAAT	2 cut(s)	785, 1211
Psp5II	RGGWCCY	2 cut(s)	870, 1296
PspFI	CCCAGC	1 cut(s)	416
PspN4I	GGNNCC	5 cut(s)	228, 330, 871, 1297, 1314
PspPI	GGNCC	5 cut(s)	440, 854, 870, 1280, 1296
PspPPI	RGGWCCY	2 cut(s)	870, 1296
PsuI	RGATCY	1 cut(s)	1344
PvuII	CAGCTG	2 cut(s)	743, 1169
RsaI	GTAC	4 cut(s)	502, 860, 928, 1286
RsaNI	GTAC	4 cut(s)	501, 859, 927, 1285
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	5 cut(s)	477, 785, 903, 1211, 1349
SatI	GCNGC	7 cut(s)	63, 119, 636, 639, 1062, 1065, 1478
Sau3AI	GATC	6 cut(s)	122, 211, 237, 737, 1163, 1344
Sau96I	GGNCC	5 cut(s)	440, 854, 870, 1280, 1296
ScaI	AGTACT	2 cut(s)	502, 928
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	103, 1383
SfaNI	GCATC	1 cut(s)	1357
SfcI	CTRYAG	2 cut(s)	777, 1203
SinI	GGWCC	4 cut(s)	854, 870, 1280, 1296
SmlI	CTYRAG	1 cut(s)	1481
SmoI	CTYRAG	1 cut(s)	1481
Sse9I	AATT	7 cut(s)	246, 465, 690, 891, 1116, 1449, 1487
SsiI	CCGC	5 cut(s)	62, 65, 255, 878, 1304
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	3 cut(s)	348, 873, 1299
TaaI	ACNGT	6 cut(s)	79, 827, 1253, 1417, 1462, 1512
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	4 cut(s)	188, 214, 772, 1198
TasI	AATT	7 cut(s)	246, 465, 690, 891, 1116, 1449, 1487
TatI	WGTACW	2 cut(s)	500, 926
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	5 cut(s)	477, 785, 903, 1211, 1349
Tru9I	TTAA	5 cut(s)	477, 785, 903, 1211, 1349
TscAI	CASTG	6 cut(s)	513, 939, 1345, 1420, 1467, 1515
TseI	GCWGC	6 cut(s)	118, 635, 638, 1061, 1064, 1477
TspDTI	ATGAA	3 cut(s)	385, 655, 1081
TspGWI	ACGGA	4 cut(s)	473, 846, 1272, 1369
TspRI	CASTG	6 cut(s)	513, 939, 1345, 1420, 1467, 1515
VpaK11BI	GGWCC	4 cut(s)	854, 870, 1280, 1296
VspI	ATTAAT	2 cut(s)	785, 1211
XapI	RAATTY	2 cut(s)	690, 1116
XcmI	CCANNNNNNNNNTGG	3 cut(s)	53, 477, 903
XmnI	GAANNNNTTC	2 cut(s)	494, 920
ZrmI	AGTACT	2 cut(s)	502, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.