Rh7BG188600

transmembrane protein 64-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007106
Physical Location & Seq
Reverse (-)
15186843 .. 15190817
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG188600.1

Sequence Viewer

Length: 747 bp
ATGACCTATGAGGAGAATGTTGATCGAGGAGAGGTGGAGCCGGAGCTGATCGTAAGAATTGGGGGCGGTGAGGATGATGAGAAGGGGAGAGGGGACTATGTGAAGCTCAGGGAGTGTCCCGGCGAGGCTGAGGAGTCGTCGTCGTCGTCTTCGCCCAAGGGATTATGGTGTTTGTGGTATTGGGTTAGGTTGGTGTTGCTGTTCATGTGCTTGGGGTTGTTGGCTGGGGTTTTTATCAAATGGGTCGGGCCTTTTCTGATGGATACGGAGGTTATTCCAATCATTAACTGGGAGACAAAAACATTCAGTCCTCCAGTGCTTGCTATTCTGGTCTTTGCTTCTGTGGCATTGTTTCCTACCATACTATTACCATCTTCACCTTCTATGTGGGTGGCTGGAATGACTTTTGGTTATGGCTATGGATTTCTTCTCATTATATCAGCAGCAGCTATTGGTATATCACTTCCATATTTCATTAGCTATCTCTTCTACCATAAAATTCAGGGATGGTTAGAAAAATATCCAAAGAGAGCTTCCATTCTAAGATCAGCTGGCGAAGGAAACTGGTTTCACCAGTTTCGAGCTGTAGCATTAATCAGGATTTCTCCATTCCCTTATATTATATATAACTACTGTGCTGTGGCTACCAATGTCAAGTATGGTCCGTACCTCTTGGGGTCCTTGGCGGGAATGGTTCCAGAAACATTCGTTGCCATTTACACGTACGTAAAATCCCACTCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

248

Amino Acids

27.84

Weight (kDa)

6.1

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 123 - 241 4e-15 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 66, 686
AcsI RAATTY 1 cut(s) 498
AfaI GTAC 2 cut(s) 668, 725
AflIII ACRYGT 1 cut(s) 720
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AluBI AGCT 7 cut(s) 46, 106, 449, 480, 533, 551, 584
AluI AGCT 7 cut(s) 46, 106, 449, 480, 533, 551, 584
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 443, 446
ApoI RAATTY 1 cut(s) 498
AseI ATTAAT 1 cut(s) 593
AspS9I GGNCC 3 cut(s) 248, 662, 678
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 80, 369, 563
AvaII GGWCC 2 cut(s) 662, 678
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BbsI GAAGAC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 455, 458
BccI CCATC 3 cut(s) 253, 379, 501
BciVI GTATCC 1 cut(s) 256
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 585
BfuI GTATCC 1 cut(s) 256
BisI GCNGC 2 cut(s) 444, 447
BlsI GCNGC 2 cut(s) 445, 448
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 662, 678
BmgT120I GGNCC 3 cut(s) 248, 662, 678
BmiI GGNNCC 3 cut(s) 39, 679, 696
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 297
Bpu10I CCTNAGC 2 cut(s) 107, 129
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 2 cut(s) 723, 727
BsaJI CCNNGG 2 cut(s) 156, 681
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 4 cut(s) 293, 314, 569, 574
BseDI CCNNGG 2 cut(s) 156, 681
BseGI GGATG 2 cut(s) 79, 512
BseMII CTCAG 2 cut(s) 120, 121
BseNI ACTGG 4 cut(s) 293, 314, 569, 574
BseRI GAGGAG 3 cut(s) 26, 42, 146
BseXI GCAGC 2 cut(s) 455, 458
BseYI CCCAGC 1 cut(s) 224
BshFI GGCC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 41, 120
BsiWI CGTACG 1 cut(s) 723
BslFI GGGAC 2 cut(s) 102, 107
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 2 cut(s) 102, 107
BsnI GGCC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 22, 48, 545
BspACI CCGC 2 cut(s) 66, 686
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 2 cut(s) 120, 121
BspLI GGNNCC 3 cut(s) 39, 679, 696
BsrI ACTGG 4 cut(s) 293, 314, 569, 574
BssECI CCNNGG 2 cut(s) 156, 681
BssMI GATC 3 cut(s) 22, 48, 545
BssT1I CCWWGG 2 cut(s) 156, 681
Bst4CI ACNGT 1 cut(s) 635
Bst6I CTCTTC 1 cut(s) 491
BstBAI YACGTR 2 cut(s) 723, 727
BstC8I GCNNGC 2 cut(s) 321, 553
BstDEI CTNAG 3 cut(s) 107, 129, 542
BstF5I GGATG 2 cut(s) 79, 512
BstKTI GATC 3 cut(s) 25, 51, 548
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 3 cut(s) 22, 48, 545
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 585
BstSNI TACGTA 1 cut(s) 727
BstV1I GCAGC 2 cut(s) 455, 458
BstV2I GAAGAC 1 cut(s) 141
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 79, 512
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 321, 553
Cfr13I GGNCC 3 cut(s) 248, 662, 678
Csp6I GTAC 2 cut(s) 667, 724
CviAII CATG 1 cut(s) 205
CviQI GTAC 2 cut(s) 667, 724
DdeI CTNAG 3 cut(s) 107, 129, 542
DpnI GATC 3 cut(s) 24, 50, 547
DpnII GATC 3 cut(s) 22, 48, 545
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco105I TACGTA 1 cut(s) 727
Eco130I CCWWGG 2 cut(s) 156, 681
Eco47I GGWCC 2 cut(s) 662, 678
EcoO109I RGGNCCY 1 cut(s) 678
EcoT14I CCWWGG 2 cut(s) 156, 681
ErhI CCWWGG 2 cut(s) 156, 681
FaeI CATG 1 cut(s) 208
FaqI GGGAC 2 cut(s) 102, 107
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 679
Fnu4HI GCNGC 2 cut(s) 444, 447
FokI GGATG 2 cut(s) 86, 519
Fsp4HI GCNGC 2 cut(s) 444, 447
GluI GCNGC 2 cut(s) 444, 447
GsaI CCCAGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 41, 120
Hin1II CATG 1 cut(s) 208
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 41, 120
HphI GGTGA 3 cut(s) 80, 369, 563
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 598, 698
Hpy99I CGWCG 3 cut(s) 142, 145, 148
HpyAV CCTTC 3 cut(s) 76, 390, 551
HpyCH4III ACNGT 1 cut(s) 635
HpyCH4IV ACGT 2 cut(s) 722, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 3 cut(s) 107, 129, 542
HpySE526I ACGT 2 cut(s) 722, 726
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 22, 48, 545
LmnI GCTCC 2 cut(s) 37, 43
Lsp1109I GCAGC 2 cut(s) 455, 458
MaeII ACGT 2 cut(s) 722, 726
MalI GATC 3 cut(s) 24, 50, 547
MboI GATC 3 cut(s) 22, 48, 545
MboII GAAGA 4 cut(s) 141, 366, 419, 478
MluCI AATT 2 cut(s) 57, 498
MlyI GAGTC 1 cut(s) 143
MseI TTAA 3 cut(s) 285, 593, 745
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 2 cut(s) 41, 120
MspR9I CCNGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 344
NciI CCSGG 1 cut(s) 120
NdeII GATC 3 cut(s) 22, 48, 545
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 3 cut(s) 39, 679, 696
PcsI WCGNNNNNNNCGW 1 cut(s) 143
Pfl23II CGTACG 1 cut(s) 723
PkrI GCNGC 2 cut(s) 445, 448
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 2 cut(s) 723, 727
PpuMI RGGWCCY 1 cut(s) 678
PshBI ATTAAT 1 cut(s) 593
Psp5II RGGWCCY 1 cut(s) 678
PspFI CCCAGC 1 cut(s) 224
PspLI CGTACG 1 cut(s) 723
PspN4I GGNNCC 3 cut(s) 39, 679, 696
PspPI GGNCC 3 cut(s) 248, 662, 678
PspPPI RGGWCCY 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 2 cut(s) 668, 725
RsaNI GTAC 2 cut(s) 667, 724
SaqAI TTAA 3 cut(s) 285, 593, 745
SatI GCNGC 2 cut(s) 444, 447
Sau3AI GATC 3 cut(s) 22, 48, 545
Sau96I GGNCC 3 cut(s) 248, 662, 678
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 585
SinI GGWCC 2 cut(s) 662, 678
SnaBI TACGTA 1 cut(s) 727
Sse9I AATT 2 cut(s) 57, 498
SsiI CCGC 2 cut(s) 66, 686
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 156, 681
TaaI ACNGT 1 cut(s) 635
TaiI ACGT 2 cut(s) 725, 729
TaqI TCGA 2 cut(s) 25, 580
TasI AATT 2 cut(s) 57, 498
Tru1I TTAA 3 cut(s) 285, 593, 745
Tru9I TTAA 3 cut(s) 285, 593, 745
TscAI CASTG 1 cut(s) 321
TseI GCWGC 2 cut(s) 443, 446
TspDTI ATGAA 2 cut(s) 193, 463
TspGWI ACGGA 2 cut(s) 281, 654
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 662, 678
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 1 cut(s) 498
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.