Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007106

Physical Location & Seq

Genomic Coordinates Forward (+)

9611631 .. 9616197

Gene Structure 4567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G083300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACCTATGACGAAAGTGAGGATCGGGGAGAGGTGGTGCCGGAGCTGATTTTGAGAATTGGGGGTGAAGATGACAAAAGGGACTATGTGAAGTTGAGGGGTGATCATGGCGATTGCGGACCGGCGGAGGGGGTTGAGGGGCCGGTGGAGCCCTCTCCCCCAAAAAAGTTAGCGTCTTTGTGGTATTGGATTCGGTTGGTATTGTTGGTCATGTGCTTGGTTTTGTTGGCTGGGGTTTTTGTCAAATGGGTTGGACCTTTCTTCATGGATAAGGAGATTATTCCAATTATTACCTGGGAGACAAAGACGTTCAGTACTCCAGTGCTTGCAGTTCTCGTCTTTGCTTCTGTTGCATTATTTCCCACCCTACTTTTACCATCGTCACCTTCTATGTGGGTGGCTGGTATGACTTTTGGTTATGGCTATGGATTTCTTCTAATCATGTCAGCAGCAGCTGTGGGTGTATCTCTTCCATTTTTCATGGGCTCTCTCTTCTATCGTAAAATTCAAGGATGGTTAGAAAAATACCCAAAGAGAGCGTCCGTTCTAAGATCAGCTGGTGAAGGAAACTGGTTTCATCAGTTTCGAGCTGTAACATTAATCAGGATTTCTCCGTTCCCTTACATTATTTATAACTACTGTGCTGTGGCAACAAATGTAAAGTATGTTCCTTATCTCTTGGGGTCCTTGGCGGGAATGGTGCCAGAAACATTTGTTGCCATCTACACTGGGATCCTAATACGGACGTTGGCAGATGCTTCACATGAGCACCATGGTCTTTCTGCCCCACAAATAATCTTCACTGTTGTTGGCTTCTCTTTGACTGTGGCCACCACAATTTTCTTCACGGTGTATGCTAAAAGGCAGCTCAAGGAATTACAAAAGGATGATGAACCACTATTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

303

Amino Acids

33.71

Weight (kDa)

6.53

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12450 AT4G12000 AT4G12000 AT4G12000 AT4G22850 AT4G22850
fragaria_vesca	FvH4_5g00960 FvH4_5g00960 FvH4_5g00960
malus_domestica	MD00G1071900.v1.1 MD04G1076400.v1.1
prunus_persica	Prupe.3G013400_v2.0.a1 Prupe.5G083300_v2.0.a1
pyrus_communis	pycom04g06750 pycom06g06560
rosa_chinensis	RchiOBHm_Chr7g0200421
rosa_laevigata	RLG00000003727
rosa_multiflora	Rmu_sc0000617.1_g000042
rosa_roxburghii	Rroxscaffold_3G00256010
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh7AG185500 Rh7BG188600 Rh7CG195800 Rh7DG189600
rosa_wichuraiana	Rw7G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AccB1I	GGYRCC	2 cut(s)	37, 700
AciI	CCGC	3 cut(s)	117, 125, 692
AclWI	GGATC	3 cut(s)	30, 727, 740
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	1 cut(s)	504
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	5 cut(s)	46, 455, 557, 590, 868
AluI	AGCT	5 cut(s)	46, 455, 557, 590, 868
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	30, 727, 740
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	140, 828
ApeKI	GCWGC	3 cut(s)	449, 452, 865
ApoI	RAATTY	1 cut(s)	504
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AseI	ATTAAT	1 cut(s)	599
AspS9I	GGNCC	4 cut(s)	119, 140, 254, 684
AsuHPI	GGTGA	4 cut(s)	77, 113, 375, 572
AvaII	GGWCC	3 cut(s)	119, 254, 684
BalI	TGGCCA	1 cut(s)	830
BamHI	GGATCC	1 cut(s)	732
BanI	GGYRCC	2 cut(s)	37, 700
BanII	GRGCYC	2 cut(s)	153, 488
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	3 cut(s)	461, 464, 877
BccI	CCATC	3 cut(s)	385, 507, 728
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	3 cut(s)	450, 453, 866
BlsI	GCNGC	3 cut(s)	451, 454, 867
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	3 cut(s)	119, 254, 684
BmgT120I	GGNCC	4 cut(s)	119, 140, 254, 684
BmiI	GGNNCC	6 cut(s)	39, 141, 150, 685, 702, 734
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	1 cut(s)	745
BmuI	ACTGGG	1 cut(s)	738
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	854
BsaJI	CCNNGG	3 cut(s)	294, 687, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	2 cut(s)	121, 142
Bse1I	ACTGG	3 cut(s)	320, 575, 733
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	3 cut(s)	294, 687, 772
BseGI	GGATG	2 cut(s)	518, 892
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	3 cut(s)	320, 575, 733
BseXI	GCAGC	3 cut(s)	461, 464, 877
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	142, 830
BshNI	GGYRCC	2 cut(s)	37, 700
BsiHKAI	GWGCWC	1 cut(s)	771
BsiSI	CCGG	3 cut(s)	41, 122, 143
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	142, 830
Bsp1286I	GDGCHC	3 cut(s)	153, 488, 771
Bsp143I	GATC	4 cut(s)	22, 103, 551, 732
Bsp19I	CCATGG	1 cut(s)	772
BspACI	CCGC	3 cut(s)	117, 125, 692
BspANI	GGCC	2 cut(s)	142, 830
BspLI	GGNNCC	6 cut(s)	39, 141, 150, 685, 702, 734
BspPI	GGATC	3 cut(s)	30, 727, 740
BspT107I	GGYRCC	2 cut(s)	37, 700
BsrFI	RCCGGY	2 cut(s)	121, 142
BsrI	ACTGG	3 cut(s)	320, 575, 733
BssAI	RCCGGY	2 cut(s)	121, 142
BssECI	CCNNGG	3 cut(s)	294, 687, 772
BssMI	GATC	4 cut(s)	22, 103, 551, 732
BssT1I	CCWWGG	2 cut(s)	687, 772
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	4 cut(s)	641, 805, 826, 850
Bst6I	CTCTTC	2 cut(s)	474, 497
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	548
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	518, 892
BstKTI	GATC	4 cut(s)	25, 106, 554, 735
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	22, 103, 551, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 350
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	461, 464, 877
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	142, 830
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	518, 892
BtsIMutI	CAGTG	3 cut(s)	327, 726, 801
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr10I	RCCGGY	2 cut(s)	121, 142
Cfr13I	GGNCC	4 cut(s)	119, 140, 254, 684
CpoI	CGGWCCG	1 cut(s)	119
CseI	GACGC	2 cut(s)	162, 528
Csp6I	GTAC	1 cut(s)	315
CspI	CGGWCCG	1 cut(s)	119
CviAII	CATG	7 cut(s)	107, 211, 265, 442, 481, 764, 773
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	548
DpnI	GATC	4 cut(s)	24, 105, 553, 734
DpnII	GATC	4 cut(s)	22, 103, 551, 732
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	2 cut(s)	474, 497
EarI	CTCTTC	2 cut(s)	474, 497
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	687, 772
Eco24I	GRGCYC	2 cut(s)	153, 488
Eco47I	GGWCC	3 cut(s)	119, 254, 684
EcoO109I	RGGNCCY	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	687, 772
EcoT38I	GRGCYC	2 cut(s)	153, 488
ErhI	CCWWGG	2 cut(s)	687, 772
FaeI	CATG	7 cut(s)	110, 214, 268, 445, 484, 767, 776
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	7 cut(s)	106, 210, 264, 441, 480, 763, 772
FauI	CCCGC	1 cut(s)	685
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	450, 453, 866
FokI	GGATG	2 cut(s)	525, 899
FriOI	GRGCYC	2 cut(s)	153, 488
Fsp4HI	GCNGC	3 cut(s)	450, 453, 866
GluI	GCNGC	3 cut(s)	450, 453, 866
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	142, 830
HapII	CCGG	3 cut(s)	41, 122, 143
HgaI	GACGC	2 cut(s)	162, 528
Hin1II	CATG	7 cut(s)	110, 214, 268, 445, 484, 767, 776
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	3 cut(s)	41, 122, 143
HphI	GGTGA	4 cut(s)	77, 113, 375, 572
Hpy188III	TCNNGA	1 cut(s)	604
HpyAV	CCTTC	2 cut(s)	396, 557
HpyCH4III	ACNGT	4 cut(s)	641, 805, 826, 850
HpyCH4IV	ACGT	2 cut(s)	308, 746
HpyCH4V	TGCA	3 cut(s)	329, 353, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 350
HpyF3I	CTNAG	1 cut(s)	548
HpySE526I	ACGT	2 cut(s)	308, 746
Hsp92II	CATG	7 cut(s)	110, 214, 268, 445, 484, 767, 776
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	22, 103, 551, 732
LmnI	GCTCC	2 cut(s)	43, 148
Lsp1109I	GCAGC	3 cut(s)	461, 464, 877
LweI	GCATC	1 cut(s)	745
MaeII	ACGT	2 cut(s)	308, 746
MaeIII	GTNAC	2 cut(s)	381, 592
MalI	GATC	4 cut(s)	24, 105, 553, 734
MboI	GATC	4 cut(s)	22, 103, 551, 732
MboII	GAAGA	7 cut(s)	80, 253, 425, 461, 484, 790, 835
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	3 cut(s)	153, 488, 771
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	5 cut(s)	57, 285, 504, 837, 875
MluNI	TGGCCA	1 cut(s)	830
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	13, 25, 90, 121, 130, 163
Mox20I	TGGCCA	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	830
MspA1I	CMGCKG	2 cut(s)	455, 557
MspI	CCGG	3 cut(s)	41, 122, 143
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	148, 350
NcoI	CCATGG	1 cut(s)	772
NdeII	GATC	4 cut(s)	22, 103, 551, 732
NlaIII	CATG	7 cut(s)	110, 214, 268, 445, 484, 767, 776
NlaIV	GGNNCC	6 cut(s)	39, 141, 150, 685, 702, 734
NmuCI	GTSAC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	451, 454, 867
PpuMI	RGGWCCY	1 cut(s)	684
PshBI	ATTAAT	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	633
Psp5II	RGGWCCY	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	6 cut(s)	39, 141, 150, 685, 702, 734
PspPI	GGNCC	4 cut(s)	119, 140, 254, 684
PspPPI	RGGWCCY	1 cut(s)	684
PsrI	GAACNNNNNNTAC	2 cut(s)	651, 683
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	732
PvuII	CAGCTG	2 cut(s)	455, 557
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
Rsr2I	CGGWCCG	1 cut(s)	119
RsrII	CGGWCCG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	3 cut(s)	450, 453, 866
Sau3AI	GATC	4 cut(s)	22, 103, 551, 732
Sau96I	GGNCC	4 cut(s)	119, 140, 254, 684
ScaI	AGTACT	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	3 cut(s)	153, 488, 771
SfaNI	GCATC	1 cut(s)	745
SinI	GGWCC	3 cut(s)	119, 254, 684
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	5 cut(s)	57, 285, 504, 837, 875
SsiI	CCGC	3 cut(s)	117, 125, 692
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	687, 772
TaaI	ACNGT	4 cut(s)	641, 805, 826, 850
TaiI	ACGT	2 cut(s)	311, 749
TaqI	TCGA	1 cut(s)	586
TasI	AATT	5 cut(s)	57, 285, 504, 837, 875
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	3 cut(s)	327, 733, 808
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	3 cut(s)	449, 452, 865
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	4 cut(s)	253, 469, 566, 906
TspGWI	ACGGA	3 cut(s)	532, 603, 757
TspRI	CASTG	3 cut(s)	327, 733, 808
VpaK11BI	GGWCC	3 cut(s)	119, 254, 684
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.