Rh7AG185500

transmembrane protein 64-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007106
Physical Location & Seq
Reverse (-)
16449216 .. 16452918
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG185500.1

Sequence Viewer

Length: 750 bp
ATGACCTATGAGGAGAATGTTGATCGAGGAGAGGTGGAGCCGGAGCTGATCGTAAGAATTGGGGGCGGTGAGGATGATGAGAAGGGGAGAGGGGACTATGTGAAGCTCAGGGAGTGTCCCGGCGAGGCTGAGGAGTCGTCGTCCTCGTCGTCTTCGCCCAAGGGATTATGGTGTTTGTGGTATTGGGTTAGGTTGGTGTTGCTGTTCATGTGCCTGGGGTTGTTGGCTGGGGTTTTTATCAAATGGGTCGGGCCTTTTCTGATGGATACGGAGGTTATTCCAATGATTAACTGGGAGACGAAAACATTCAGTCCTCCAGTGCTTGCTATTCTGGTCTTTGCTTCTGTGGCATTGTTTCCTACCATACTATTACCATCTTCACCTTCTATGTGGGTGGCTGGAATGACTTTTGGTTATGGCTATGGATTTCTTCTCATTATATCAGCAGCAGCTATTGGTATATCACTTCCATATTTCATTAGCTATCTCTTCTACCATAAAATTCAGGGATGGTTAGAAAAATATCCAAAGAGAGCTTCCATTCTAAGATCAGCTGGCGAAGGAAACTGGTTTCACCAGTTTCGAGCTGTAGCATTAATCAGGATTTCTCCATTCCCTTATATTATATATAACTACTGTGCTGTGGCAACCAATGTCAAGTATGGTCCATACCTCTTGGGGTCCTTGGCGGGAATGGTTCCAGAAACATTTGTTGCCATTTACACGTACGTAAAATCCCACTCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

249

Amino Acids

27.95

Weight (kDa)

6.1

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 124 - 242 4e-15 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 66, 689
AcsI RAATTY 1 cut(s) 501
AfaI GTAC 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 723
AjnI CCWGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 7 cut(s) 46, 106, 452, 483, 536, 554, 587
AluI AGCT 7 cut(s) 46, 106, 452, 483, 536, 554, 587
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 446, 449
ApoI RAATTY 1 cut(s) 501
AseI ATTAAT 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 251, 665, 681
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 80, 372, 566
AvaII GGWCC 2 cut(s) 665, 681
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BbsI GAAGAC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 458, 461
BccI CCATC 3 cut(s) 256, 382, 504
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 259
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 588
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 2 cut(s) 447, 450
BlsI GCNGC 2 cut(s) 448, 451
Bme1390I CCNGG 2 cut(s) 120, 215
Bme18I GGWCC 2 cut(s) 665, 681
BmgT120I GGNCC 3 cut(s) 251, 665, 681
BmiI GGNNCC 3 cut(s) 39, 682, 699
BmrFI CCNGG 2 cut(s) 120, 215
BmrI ACTGGG 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 107, 129
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 2 cut(s) 726, 730
BsaJI CCNNGG 3 cut(s) 159, 214, 684
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 4 cut(s) 296, 317, 572, 577
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 3 cut(s) 159, 214, 684
BseGI GGATG 2 cut(s) 79, 515
BseMII CTCAG 2 cut(s) 120, 121
BseNI ACTGG 4 cut(s) 296, 317, 572, 577
BseRI GAGGAG 3 cut(s) 26, 42, 146
BseXI GCAGC 2 cut(s) 458, 461
BseYI CCCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 253
BsiSI CCGG 2 cut(s) 41, 120
BsiWI CGTACG 1 cut(s) 726
BslFI GGGAC 2 cut(s) 102, 107
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 102, 107
BsnI GGCC 1 cut(s) 253
Bsp143I GATC 3 cut(s) 22, 48, 548
BspACI CCGC 2 cut(s) 66, 689
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 120, 121
BspLI GGNNCC 3 cut(s) 39, 682, 699
BsrI ACTGG 4 cut(s) 296, 317, 572, 577
BssECI CCNNGG 3 cut(s) 159, 214, 684
BssMI GATC 3 cut(s) 22, 48, 548
BssT1I CCWWGG 2 cut(s) 159, 684
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 1 cut(s) 494
BstBAI YACGTR 2 cut(s) 726, 730
BstC8I GCNNGC 2 cut(s) 324, 556
BstDEI CTNAG 3 cut(s) 107, 129, 545
BstF5I GGATG 2 cut(s) 79, 515
BstKTI GATC 3 cut(s) 25, 51, 551
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 22, 48, 548
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 118, 213
BstSFI CTRYAG 1 cut(s) 588
BstSNI TACGTA 1 cut(s) 730
BstV1I GCAGC 2 cut(s) 458, 461
BstV2I GAAGAC 1 cut(s) 144
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 79, 515
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 324, 556
Cfr13I GGNCC 3 cut(s) 251, 665, 681
Csp6I GTAC 1 cut(s) 727
CviAII CATG 1 cut(s) 208
CviQI GTAC 1 cut(s) 727
DdeI CTNAG 3 cut(s) 107, 129, 545
DpnI GATC 3 cut(s) 24, 50, 550
DpnII GATC 3 cut(s) 22, 48, 548
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Eco105I TACGTA 1 cut(s) 730
Eco130I CCWWGG 2 cut(s) 159, 684
Eco47I GGWCC 2 cut(s) 665, 681
EcoO109I RGGNCCY 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 159, 684
ErhI CCWWGG 2 cut(s) 159, 684
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 1 cut(s) 211
FaqI GGGAC 2 cut(s) 102, 107
FatI CATG 1 cut(s) 207
FauI CCCGC 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 447, 450
FokI GGATG 2 cut(s) 86, 522
Fsp4HI GCNGC 2 cut(s) 447, 450
GluI GCNGC 2 cut(s) 447, 450
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 41, 120
Hin1II CATG 1 cut(s) 211
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 41, 120
HphI GGTGA 3 cut(s) 80, 372, 566
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 601, 701
Hpy99I CGWCG 2 cut(s) 142, 151
HpyAV CCTTC 3 cut(s) 76, 393, 554
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4IV ACGT 2 cut(s) 725, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 107, 129, 545
HpySE526I ACGT 2 cut(s) 725, 729
Hsp92II CATG 1 cut(s) 211
Kzo9I GATC 3 cut(s) 22, 48, 548
LmnI GCTCC 2 cut(s) 37, 43
Lsp1109I GCAGC 2 cut(s) 458, 461
MaeII ACGT 2 cut(s) 725, 729
MalI GATC 3 cut(s) 24, 50, 550
MboI GATC 3 cut(s) 22, 48, 548
MboII GAAGA 4 cut(s) 144, 369, 422, 481
MluCI AATT 2 cut(s) 57, 501
MlyI GAGTC 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 3 cut(s) 288, 596, 748
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 2 cut(s) 41, 120
MspR9I CCNGG 2 cut(s) 120, 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 120
NdeII GATC 3 cut(s) 22, 48, 548
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 3 cut(s) 39, 682, 699
PcsI WCGNNNNNNNCGW 2 cut(s) 143, 146
PdmI GAANNNNTTC 1 cut(s) 305
Pfl23II CGTACG 1 cut(s) 726
PkrI GCNGC 2 cut(s) 448, 451
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 2 cut(s) 726, 730
PpuMI RGGWCCY 1 cut(s) 681
PshBI ATTAAT 1 cut(s) 596
Psp5II RGGWCCY 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 213
PspLI CGTACG 1 cut(s) 726
PspN4I GGNNCC 3 cut(s) 39, 682, 699
PspPI GGNCC 3 cut(s) 251, 665, 681
PspPPI RGGWCCY 1 cut(s) 681
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 1 cut(s) 728
RsaNI GTAC 1 cut(s) 727
SaqAI TTAA 3 cut(s) 288, 596, 748
SatI GCNGC 2 cut(s) 447, 450
Sau3AI GATC 3 cut(s) 22, 48, 548
Sau96I GGNCC 3 cut(s) 251, 665, 681
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 120, 215
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 2 cut(s) 665, 681
SnaBI TACGTA 1 cut(s) 730
Sse9I AATT 2 cut(s) 57, 501
SsiI CCGC 2 cut(s) 66, 689
StyD4I CCNGG 2 cut(s) 118, 213
StyI CCWWGG 2 cut(s) 159, 684
TaaI ACNGT 1 cut(s) 638
TaiI ACGT 2 cut(s) 728, 732
TaqI TCGA 2 cut(s) 25, 583
TasI AATT 2 cut(s) 57, 501
Tru1I TTAA 3 cut(s) 288, 596, 748
Tru9I TTAA 3 cut(s) 288, 596, 748
TscAI CASTG 1 cut(s) 324
TseI GCWGC 2 cut(s) 446, 449
TspDTI ATGAA 2 cut(s) 196, 466
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 2 cut(s) 665, 681
VspI ATTAAT 1 cut(s) 596
XapI RAATTY 1 cut(s) 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.