Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Forward (+)

12827856 .. 12829303

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGACAAATTTTGGACTTTCCTCACTGCTCTTCATTCAGGCGCTGGGCCTATCGTGATGTTACTTTATCCATTGTACGCATCGGTGATAGCAATGGAGAGCACAACAAAAGTGGACGATGAACAGTGGCTTGCGTATTGGATAATATATTCGTTCCTCTCACTCACGGAACTGATTCTGCAATCGCTTATTGAGTGGATTCCGATTTGGTATACGGTGAAACTTGTGTTCGTGGCTTGGCTAGTTCTTCCTCAGTTTCAAGGCGCAGCTTTTATCTACAACCGTGTTGTTAGAGAACAGTTCAAGAAACACGGCGTCCTCCGCTCCACCCACTCCAAGCCCACCAAGCCCAACATCCTCCACTCCATTTTCCCCCACCGGGAGGGACACGAGGCTCACAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

135

Amino Acids

15.75

Weight (kDa)

8.06

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 99	5.2e-28	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	379, 382
AgsI	TTSAA	2 cut(s)	260, 304
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	104
AlwNI	CAGNNNCTG	2 cut(s)	44, 405
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	44, 266
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	97, 229
BauI	CACGAG	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	380
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 382
Bse3DI	GCAATG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	379, 382
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	379, 382
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	36
BsrBI	CCGCTC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	99
BssNAI	GTATAC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	315
BssSI	CACGAG	1 cut(s)	389
Bst1107I	GTATAC	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	389
Bst4CI	ACNGT	5 cut(s)	126, 217, 284, 300, 401
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 346
BstSCI	CCNGG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 131, 403
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	2 cut(s)	44, 405
CfoI	GCGC	2 cut(s)	44, 266
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviJI	RGCY	8 cut(s)	49, 130, 236, 241, 269, 340, 349, 395
CviKI_1	RGCY	8 cut(s)	49, 130, 236, 241, 269, 340, 349, 395
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
FaiI	YATR	2 cut(s)	148, 213
FaqI	GGGAC	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	2 cut(s)	43, 265
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	379
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	2 cut(s)	44, 266
Hin1I	GRCGYC	1 cut(s)	315
Hin6I	GCGC	2 cut(s)	42, 264
HinP1I	GCGC	2 cut(s)	42, 264
HinfI	GANTC	2 cut(s)	175, 199
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	2 cut(s)	97, 229
Hpy166II	GTNNAC	2 cut(s)	115, 213
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	2 cut(s)	55, 304
Hpy8I	GTNNAC	2 cut(s)	115, 213
HpyCH4III	ACNGT	5 cut(s)	126, 217, 284, 300, 401
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 346
HpyF3I	CTNAG	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	315
HspAI	GCGC	2 cut(s)	42, 264
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	3 cut(s)	24, 30, 392
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	60, 401
MbiI	CCGCTC	1 cut(s)	324
MboII	GAAGA	2 cut(s)	23, 239
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	8
MnlI	CCTC	7 cut(s)	32, 167, 261, 329, 368, 376, 385
MroXI	GAANNNNTTC	1 cut(s)	174
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	321, 346
NciI	CCSGG	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	175, 199
PkrI	GCNGC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	47
PstNI	CAGNNNCTG	2 cut(s)	44, 405
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	1 cut(s)	271
SfaNI	GCATC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	5 cut(s)	126, 217, 284, 300, 401
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	175, 199
TscAI	CASTG	2 cut(s)	31, 131
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	23, 135
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	31, 131
XapI	RAATTY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.