Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

15799085 .. 15800224

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGAAAAGCTTGGACCTTTGTTACCCAACTTCACACAGTTGCTGGGCCAGTGCTGATGTTGCTTTACCCTTTATATGCATCAGTGGTAGCCATAGAGAGCACATCCAAACTAGATGATGAGCAGTGGCTTGCCTATTGGATTATTTACTCTTTCCTCACTCTCGTGGAGATGTTGCTCCAACCAGCCCTCGAGTGGTTACCAATTTGGTACAATGTGAAACTTGTGTTTGTGGCATGGTTGGTTCTGCCACAGTTCAAGGGGGCAGCTTTCTTGTATGAGAGATATGTGAGAGATCAAGTCAGAAAGTATGGAGGGTTTAATAATCATCCCCAATTTAACCGTCCCCAATCCAGCAAAACATCCCCCACTGGCAAAGCAAAGAACTCGTTTGTGCAGTTCATGAACCCCAAGACTGGGGAGCAGGAGGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

146

Amino Acids

16.82

Weight (kDa)

9.1

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 98	5.1e-28	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	195, 416, 417
AgsI	TTSAA	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	11, 269
AluI	AGCT	2 cut(s)	11, 269
Alw21I	GWGCWC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	15, 47
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	15
BauI	CACGAG	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	15, 47
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 416, 417
Bse1I	ACTGG	3 cut(s)	50, 376, 421
BseGI	GGATG	3 cut(s)	104, 328, 362
BseLI	CCNNNNNNNGG	3 cut(s)	195, 416, 417
BseNI	ACTGG	3 cut(s)	50, 376, 421
BseXI	GCAGC	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	195, 416, 417
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	50, 376, 421
BssMI	GATC	1 cut(s)	295
BssSI	CACGAG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	40, 255, 344
BstC8I	GCNNGC	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	104, 328, 362
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstPI	GGTNACC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	104, 328, 362
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	4 cut(s)	57, 90, 131, 369
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	15, 47
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	237, 403
CviJI	RGCY	7 cut(s)	11, 49, 92, 130, 188, 269, 431
CviKI_1	RGCY	7 cut(s)	11, 49, 92, 130, 188, 269, 431
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	2 cut(s)	240, 406
FaiI	YATR	8 cut(s)	76, 78, 95, 238, 279, 288, 312, 404
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	2 cut(s)	236, 402
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	91, 315, 349
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	240, 406
HindIII	AAGCTT	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	1 cut(s)	403
HpyCH4III	ACNGT	3 cut(s)	40, 255, 344
HpyCH4V	TGCA	2 cut(s)	80, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	240, 406
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	183, 421
LpnPI	CCDG	7 cut(s)	30, 63, 198, 357, 367, 402, 410
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	22, 198
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	2 cut(s)	204, 335
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	167, 200, 308, 421
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	2 cut(s)	321, 339
MslI	CAYNNNNRTG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	240, 406
NsiI	ATGCAT	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	268
PspEI	GGTNACC	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	15, 47
PspXI	VCTCGAGB	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	321, 339
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	15, 47
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	3 cut(s)	13, 20, 271
SfaNI	GCATC	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	204, 335
SspMI	CTAG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	40, 255, 344
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	204, 335
Tru1I	TTAA	2 cut(s)	321, 339
Tru9I	TTAA	2 cut(s)	321, 339
TscAI	CASTG	4 cut(s)	57, 90, 131, 376
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	391, 419
TspRI	CASTG	4 cut(s)	57, 90, 131, 376
VpaK11BI	GGWCC	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.