RchiOBHm_Chr7g0189711

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008990
Physical Location & Seq
Reverse (-)
8974383 .. 8976477
2095 bp
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UTR
Exon/CDS
Intron
PRQ16944

Sequence Viewer

Length: 423 bp
ATGGGAAAAGGCTGGACTTTCCTTACCCAACTTCACTCTCTTGCTGGGCCTGTGTTGCAGCTGCTTTACCCCTTGTATGCATCAGTGATGGCCATAGAGAGCCCATCAAAACTAGATGATGAGCAGTGGCTTGCTTATTGGATTATTTACTCTTTCCTCACTCTCTTGGAGATGGTTATCCAACCGGCTTTAGAATGGTTACCAATTTGGTATGAGGTGAAGCTTGTGTTTGTGGCGTGGTTGGTTCTACCACAATTCAAAGGGGCAGCTTTCTTGTATGATAAATATGTGAGGGAGCAAATCCTCAGGTATAGAGGAGGACAAGACCATCATGATTCATCCAGCAAGTCCCCAACTGGCAAAGGCAAGAGCAAGTTTGTGCAGTTCATGACCCCCAAGAGTGGAGAGCAGGAAGCTTACTGA

Protein Analysis

140

Amino Acids

16.2

Weight (kDa)

6.83

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 99 3e-29 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 4 cut(s) 61, 223, 269, 416
AluI AGCT 4 cut(s) 61, 223, 269, 416
AoxI GGCC 2 cut(s) 47, 90
ApeKI GCWGC 3 cut(s) 58, 61, 266
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 305
BalI TGGCCA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 48, 70, 278
BccI CCATC 4 cut(s) 82, 112, 166, 336
BfaI CTAG 1 cut(s) 113
BisI GCNGC 3 cut(s) 59, 62, 267
BlsI GCNGC 3 cut(s) 60, 63, 268
BmgT120I GGNCC 1 cut(s) 47
BmsI GCATC 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 361
Bse21I CCTNAGG 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 176
BseGI GGATG 1 cut(s) 338
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 3 cut(s) 48, 70, 278
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 401
BshFI GGCC 2 cut(s) 49, 92
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 2 cut(s) 49, 92
Bsp1286I GDGCHC 1 cut(s) 104
BspANI GGCC 2 cut(s) 49, 92
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 2 cut(s) 331, 387
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 305
BstEII GGTNACC 1 cut(s) 198
BstF5I GGATG 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstPI GGTNACC 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 48, 70, 278
Bsu36I CCTNAGG 1 cut(s) 305
BsuRI GGCC 2 cut(s) 49, 92
BtsCI GGATG 1 cut(s) 338
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 90, 131
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 2 cut(s) 331, 387
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 47
CviAII CATG 2 cut(s) 332, 388
DdeI CTNAG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 104
Eco81I CCTNAGG 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 2 cut(s) 335, 391
FaiI YATR 8 cut(s) 78, 95, 213, 279, 288, 312, 333, 389
FaqI GGGAC 1 cut(s) 334
FatI CATG 2 cut(s) 331, 387
Fnu4HI GCNGC 3 cut(s) 59, 62, 267
FokI GGATG 1 cut(s) 325
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 59, 62, 267
FspBI CTAG 1 cut(s) 113
GluI GCNGC 3 cut(s) 59, 62, 267
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 49, 92
HapII CCGG 1 cut(s) 185
Hin1II CATG 2 cut(s) 335, 391
HindIII AAGCTT 2 cut(s) 221, 414
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 332, 388
HpyCH4V TGCA 3 cut(s) 58, 80, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 305
Hsp92II CATG 2 cut(s) 335, 391
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 7 cut(s) 30, 63, 198, 292, 342, 355, 395
Lsp1109I GCAGC 3 cut(s) 48, 70, 278
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 2 cut(s) 204, 254
MluNI TGGCCA 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 167, 208, 285, 308, 311, 314
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 82
MscI TGGCCA 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 55
NlaIII CATG 2 cut(s) 335, 391
NsiI ATGCAT 1 cut(s) 82
PagI TCATGA 2 cut(s) 331, 387
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 3 cut(s) 60, 63, 268
PspEI GGTNACC 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 61
SatI GCNGC 3 cut(s) 59, 62, 267
Sau96I GGNCC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 104
SetI ASST 6 cut(s) 63, 219, 225, 271, 311, 418
SfaNI GCATC 1 cut(s) 89
Sse9I AATT 2 cut(s) 204, 254
SspMI CTAG 1 cut(s) 113
TasI AATT 2 cut(s) 204, 254
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 2 cut(s) 90, 131
TseI GCWGC 3 cut(s) 58, 61, 266
TspDTI ATGAA 2 cut(s) 327, 376
TspRI CASTG 2 cut(s) 90, 131
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.