Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

9151304 .. 9153437

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG107500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCATAGAGAGCCCATCAAAACTAGATGATGAGCAGTGGCTTGCTTATTGGATTATTTACTCTTTCCTCACTCTCTTGGAGATGGTTATCCAACCGGCTTTAGAATGGTTACCAATTTGGTATGAGGTGAAGCTTGTGTTTGTGGCGTGGTTGGTTCTACCACAATTCAAAGGGGCAGCTTTCTTGTATGATAAATATGTGAGGGAGCAAATCCTCAGGTATAGAGGAGGACAAGACCATCATGATTCATCCAGCAAGTCCCCAACTGGCAAAGGCAAGAGCAAGTTTGTGCAGTTCATGACCCCCAAGAGTGTAAGTTCACTTAACTTCGTCTGCTACCAATGTCATTATATCTTAAAGGCACAAGTTGCAATTTTGGTCCTTATGTTTGATTGGATTCACAATCTTATCCTTACGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

141

Amino Acids

16.52

Weight (kDa)

7.77

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	2 - 70	5.1e-26	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	136, 182
AluI	AGCT	2 cut(s)	136, 182
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	3 cut(s)	25, 79, 249
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	274
Bse21I	CCTNAGG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	89
BseGI	GGATG	1 cut(s)	251
BseJI	GATNNNNATC	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	231
BspHI	TCATGA	2 cut(s)	244, 300
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	218
BstEII	GGTNACC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	2 cut(s)	244, 300
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	382
CviAII	CATG	2 cut(s)	245, 301
CviJI	RGCY	6 cut(s)	5, 15, 43, 101, 136, 182
CviKI_1	RGCY	6 cut(s)	5, 15, 43, 101, 136, 182
DdeI	CTNAG	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	2 cut(s)	248, 304
FaiI	YATR	9 cut(s)	8, 126, 192, 201, 225, 246, 302, 354, 389
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	244, 300
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	2 cut(s)	248, 304
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	2 cut(s)	248, 400
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	2 cut(s)	245, 301
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	2 cut(s)	295, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	248, 304
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	4 cut(s)	111, 205, 255, 268
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	117, 167, 375
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	80, 121, 198, 221, 224, 227
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	327, 359, 424
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	248, 304
PagI	TCATGA	2 cut(s)	244, 300
PfeI	GAWTC	2 cut(s)	248, 400
PkrI	GCNGC	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	327, 359, 424
SatI	GCNGC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	4 cut(s)	132, 138, 184, 224
SinI	GGWCC	1 cut(s)	382
Sse9I	AATT	3 cut(s)	117, 167, 375
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	421
TasI	AATT	3 cut(s)	117, 167, 375
TfiI	GAWTC	2 cut(s)	248, 400
Tru1I	TTAA	3 cut(s)	327, 359, 424
Tru9I	TTAA	3 cut(s)	327, 359, 424
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	240, 289
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	382
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.