Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

61478182 .. 61479771

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0499200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGAAACTGGAAGCTAATATGGAAACCAGAATTAAACAGGCTCAGAAGCTGAGTGCAAAGTTAGATAGAGAGAGACTCCCGCTCACTGAAGCAATAGACCTAAAGATGTTTGAGCAGTGGTGTATTGAAAGACGGTTGAGATATCTCAAAAGCCAGAAAGAGGAGCTCGAATCCTGTCTAAAATACAAGAGAAACAAAATGGATCTGCTGCAGCAATTTCTGGAGAAGCTTCGTTTTTCGGACAATGCTTACCAAAAGAAACCAATCAAGTCATGCTTGTCAGAACAAGAGATGAATAAACATAAATTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTCGCCAAGGAAAAGCAGCTTTTAAAAGAGATCAAAGTGAGTCAGCAGGAGGATAGTTTTGGTTCATTTTGGAATCAATTGGAAGAACGTCTTCGTGATTCTGAAAATACTCGCTGGTGGCATGACTGGCATCAATTGAAGCAGACCTGGTGGTTGCATGACTTGCATCACCAGATGCCATTTTCGATCTATAAGAGAGATTCAGTTGAAGACCGTGAAGGAAATATCATATATAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

194

Amino Acids

23.93

Weight (kDa)

9.23

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	318
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	131, 481, 551
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	5 cut(s)	17, 52, 169, 232, 361
AluI	AGCT	5 cut(s)	17, 52, 169, 232, 361
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	213
AlwNI	CAGNNNCTG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	318
ApeKI	GCWGC	3 cut(s)	211, 214, 358
Asp700I	GAANNNNTTC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	425, 558
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	198, 226, 370
BccI	CCATC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	3 cut(s)	212, 215, 359
BlsI	GCNGC	3 cut(s)	213, 216, 360
Bme1390I	CCNGG	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	3 cut(s)	481, 507, 517
BpiI	GAAGAC	2 cut(s)	425, 558
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpmI	CTGGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	15, 473
BseAI	TCCGGA	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	44, 59
BseNI	ACTGG	2 cut(s)	15, 473
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	198, 226, 370
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	205, 372, 528
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	45, 58
BspEI	TCCGGA	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	15, 473
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	205, 372, 528
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	138, 557
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstDEI	CTNAG	2 cut(s)	45, 53
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	3 cut(s)	208, 375, 531
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	205, 372, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 505
BstNI	CCWGG	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	198, 226, 370
BstV2I	GAAGAC	2 cut(s)	425, 558
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	87, 125
CaiI	CAGNNNCTG	1 cut(s)	52
CsiI	ACCWGGT	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	4 cut(s)	276, 329, 464, 500
CviJI	RGCY	7 cut(s)	17, 44, 52, 156, 169, 232, 361
CviKI_1	RGCY	7 cut(s)	17, 44, 52, 156, 169, 232, 361
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	2 cut(s)	45, 53
DpnI	GATC	3 cut(s)	207, 374, 530
DpnII	GATC	3 cut(s)	205, 372, 528
DraI	TTTAAA	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	488
EcoRV	GATATC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	279, 332, 467, 503
FalI	AAGNNNNNCTT	4 cut(s)	263, 295, 417, 449
FatI	CATG	4 cut(s)	275, 328, 463, 499
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	212, 215, 359
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	212, 215, 359
GluI	GCNGC	3 cut(s)	212, 215, 359
GsuI	CTGGAG	1 cut(s)	245
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	4 cut(s)	279, 332, 467, 503
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	6 cut(s)	78, 173, 382, 415, 440, 542
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	4 cut(s)	48, 244, 286, 445
Hpy188III	TCNNGA	3 cut(s)	224, 319, 437
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	2 cut(s)	138, 557
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	5 cut(s)	59, 214, 313, 499, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 505
HpyF3I	CTNAG	2 cut(s)	45, 53
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	4 cut(s)	279, 332, 467, 503
Kpn2I	TCCGGA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	205, 372, 528
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	3 cut(s)	198, 226, 370
LweI	GCATC	3 cut(s)	481, 507, 517
MabI	ACCWGGT	1 cut(s)	488
MaeII	ACGT	1 cut(s)	430
MalI	GATC	3 cut(s)	207, 374, 530
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	3 cut(s)	205, 372, 528
MboII	GAAGA	3 cut(s)	425, 437, 563
MfeI	CAATTG	2 cut(s)	419, 476
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	5 cut(s)	33, 218, 308, 419, 476
MlyI	GAGTC	2 cut(s)	72, 391
MnlI	CCTC	2 cut(s)	157, 385
MroI	TCCGGA	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	2 cut(s)	36, 365
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	490
MunI	CAATTG	2 cut(s)	419, 476
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	469, 505
NdeII	GATC	3 cut(s)	205, 372, 528
NlaIII	CATG	4 cut(s)	279, 332, 467, 503
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	173, 415, 440, 542
PkrI	GCNGC	3 cut(s)	213, 216, 360
PleI	GAGTC	2 cut(s)	72, 390
PpsI	GAGTC	2 cut(s)	72, 390
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	36, 365
SatI	GCNGC	3 cut(s)	212, 215, 359
Sau3AI	GATC	3 cut(s)	205, 372, 528
SchI	GAGTC	2 cut(s)	72, 391
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	8 cut(s)	19, 54, 105, 171, 234, 363, 433, 491
SexAI	ACCWGGT	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	481, 507, 517
SfcI	CTRYAG	1 cut(s)	212
Sse9I	AATT	5 cut(s)	33, 218, 308, 419, 476
SsiI	CCGC	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	138, 557
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	171, 527
TasI	AATT	5 cut(s)	33, 218, 308, 419, 476
TfiI	GAWTC	4 cut(s)	173, 415, 440, 542
Tru1I	TTAA	2 cut(s)	36, 365
Tru9I	TTAA	2 cut(s)	36, 365
TscAI	CASTG	2 cut(s)	94, 125
TseI	GCWGC	3 cut(s)	211, 214, 358
TspDTI	ATGAA	2 cut(s)	311, 396
TspRI	CASTG	2 cut(s)	94, 125
XmnI	GAANNNNTTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.