Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

18001513 .. 18002489

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGAAAAGCTTGGACCTTTCTTACCCAACTTCACACACTTGCTGGGCCAGCGTTGACGTTGCTTTACCCTTTATATGCATCAGTGGTAGCAATAGAGAGCACATCCAAACTAGATGATGAGCAGTGGCTTGCTTATTGGGTTATTTACTCTTTCCTCACTCTCATGGAGATGGTGCTCCGACCAGCTCTTGAGTGGTTACCAATTTGGTATGATGTGAAGCTTGTGTTTGTGGCATGGATGGTGCTGCCACAGTTCAAGGGGGCAGCTTTCTTGTATGAGAGATATGTGAGAGATCAAGTCAGAAAGTATGGAGGGTTGAAGGACCATCCCAAATCCGGCAAGACATCCCCCACTGGCAAAGCAAAGAAGAAGTTTATGCAGTTCCTGACCCCCAAGAATGTGAGTGGGGAGCAGGAGGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

143

Amino Acids

16.4

Weight (kDa)

9.35

Isoelectric Point (pI)

24.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	259, 322
AluBI	AGCT	4 cut(s)	11, 188, 223, 269
AluI	AGCT	4 cut(s)	11, 188, 223, 269
Alw21I	GWGCWC	2 cut(s)	104, 180
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	247, 266
AspS9I	GGNCC	3 cut(s)	15, 47, 325
AvaII	GGWCC	2 cut(s)	15, 325
Bbv12I	GWGCWC	2 cut(s)	104, 180
BbvI	GCAGC	2 cut(s)	234, 278
BccI	CCATC	3 cut(s)	166, 235, 336
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	248, 267
BlsI	GCNGC	2 cut(s)	249, 268
Bme18I	GGWCC	2 cut(s)	15, 325
BmgT120I	GGNCC	3 cut(s)	15, 47, 325
BmsI	GCATC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	361
BseGI	GGATG	4 cut(s)	104, 246, 328, 347
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	234, 278
BseYI	CCCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	104, 180
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	338
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	104, 180
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	51, 132
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	4 cut(s)	104, 246, 328, 347
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstPI	GGTNACC	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	234, 278
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	104, 246, 328, 347
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	3 cut(s)	90, 131, 354
Cac8I	GCNNGC	2 cut(s)	51, 132
CaiI	CAGNNNCTG	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	15, 47, 325
CviAII	CATG	2 cut(s)	166, 237
CviJI	RGCY	7 cut(s)	11, 49, 130, 188, 223, 269, 422
CviKI_1	RGCY	7 cut(s)	11, 49, 130, 188, 223, 269, 422
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	15, 325
Eco91I	GGTNACC	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	2 cut(s)	169, 240
FaiI	YATR	9 cut(s)	76, 78, 167, 213, 238, 279, 288, 312, 380
FatI	CATG	2 cut(s)	165, 236
Fnu4HI	GCNGC	2 cut(s)	248, 267
FokI	GGATG	4 cut(s)	91, 253, 315, 334
Fsp4HI	GCNGC	2 cut(s)	248, 267
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	248, 267
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	2 cut(s)	169, 240
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	2 cut(s)	9, 221
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	182, 305
Hpy188III	TCNNGA	2 cut(s)	191, 388
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	80, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	169, 240
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	183, 412
LpnPI	CCDG	7 cut(s)	30, 63, 198, 342, 352, 401, 401
Lsp1109I	GCAGC	2 cut(s)	234, 278
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	104, 180
MluCI	AATT	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	167, 308, 412
Mph1103I	ATGCAT	1 cut(s)	82
MslI	CAYNNNNRTG	2 cut(s)	164, 170
MspI	CCGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	169, 240
NsiI	ATGCAT	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	249, 268
PspEI	GGTNACC	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	44
PspPI	GGNCC	3 cut(s)	15, 47, 325
PstNI	CAGNNNCTG	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	164, 170
SatI	GCNGC	2 cut(s)	248, 267
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	3 cut(s)	15, 47, 325
SduI	GDGCHC	2 cut(s)	104, 180
SetI	ASST	6 cut(s)	13, 20, 62, 190, 225, 271
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	2 cut(s)	15, 325
SmiMI	CAYNNNNRTG	2 cut(s)	164, 170
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	204
SspMI	CTAG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	62
TasI	AATT	1 cut(s)	204
TscAI	CASTG	3 cut(s)	90, 131, 361
TseI	GCWGC	2 cut(s)	247, 266
TspRI	CASTG	3 cut(s)	90, 131, 361
VpaK11BI	GGWCC	2 cut(s)	15, 325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.