Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

20633193 .. 20634618

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGACAAAACTATGGACTTCTCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTCTATCCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGGCTTGCTTATTGGATTCTCTATTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTCCTAGAGTGGATACCGATATGGTACACGGCGAAGCTAGTGTTTGTGGCATGGTTGGTTTTACCACAATTTAGAGGAGCTGCTTTTATATACAACAAAGTCGTGAGGGAACAGTTCAAGAAGTACGGCATCCTCAAACCTAAGGTAGAGCATCAGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

116

Amino Acids

13.48

Weight (kDa)

7.94

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 99	4.4e-29	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	212, 311
AgsI	TTSAA	2 cut(s)	182, 304
AluBI	AGCT	2 cut(s)	223, 266
AluI	AGCT	2 cut(s)	223, 266
ApeKI	GCWGC	2 cut(s)	61, 266
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	67, 97
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	48, 253
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	2 cut(s)	231, 328
BciVI	GTATCC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	191, 224
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	2 cut(s)	62, 267
BlsI	GCNGC	2 cut(s)	63, 268
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	3 cut(s)	48, 324, 346
BsaJI	CCNNGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	174, 315
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	48, 253
Bsp1286I	GDGCHC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	327, 345
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	174, 315
BstV1I	GCAGC	2 cut(s)	48, 253
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	174, 315
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	211, 310
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	5 cut(s)	102, 130, 223, 266, 344
CviKI_1	RGCY	5 cut(s)	102, 130, 223, 266, 344
CviQI	GTAC	2 cut(s)	211, 310
DdeI	CTNAG	2 cut(s)	327, 345
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	1 cut(s)	240
FaiI	YATR	7 cut(s)	13, 76, 78, 208, 238, 275, 277
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	62, 267
FokI	GGATG	2 cut(s)	161, 302
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	62, 267
FspBI	CTAG	2 cut(s)	191, 224
GluI	GCNGC	2 cut(s)	62, 267
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	2 cut(s)	67, 97
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	289, 304
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	300
HpyF3I	CTNAG	2 cut(s)	327, 345
Hsp92II	CATG	1 cut(s)	240
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	2 cut(s)	30, 326
Lsp1109I	GCAGC	2 cut(s)	48, 253
LweI	GCATC	3 cut(s)	48, 324, 346
MaeI	CTAG	2 cut(s)	191, 224
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	254
MnlI	CCTC	4 cut(s)	50, 254, 285, 329
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	63, 268
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	212, 311
RsaNI	GTAC	2 cut(s)	211, 310
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	62, 267
Sau96I	GGNCC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	4 cut(s)	225, 268, 328, 333
SfaNI	GCATC	3 cut(s)	48, 324, 346
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	1 cut(s)	254
SspMI	CTAG	2 cut(s)	191, 224
TaaI	ACNGT	1 cut(s)	300
TasI	AATT	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	61, 266
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	2 cut(s)	191, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.