Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

8166693 .. 8168824

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG104500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAACTTAGACTTATGTTTATTGTGGGAATTTGATTATAGGTATGCATCAGTGATGGCCATAGAGAGCCCATCAAAACTAGATGATGAGCAGTGGCTTGCTTATTGGATTATTTACTCTTTCCTCACTCTCTTGGAGATGGTTATCCAACCCGCTTTAGAATGGTTACCAATTTGGTATGAGGTGAAGCTTGTGTTTGTGGCGTGGTTGGTTCTACCACAATTCAAAGGGGCAGCTTTCTTGTATGATAAATATGTGAGGGAGCAAATCCTCAGGTATAGAGGAGGACAAGACCATCATGATTCATCCAGCAAGTCCCCAACTGGCAAAGGCAAGAGCAAGTTTGTGCAGTTCATGACCCCCAAGAGTGTAAGTTCACTTAACTTCGTCTGCTACCAATGTCATTATATCTTAAAGGCGCAAGTTGCAATTTTGGTCCTTATGTTTGATTGGATTCACAATCTTATCCTTACGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

159

Amino Acids

18.76

Weight (kDa)

6.4

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	15 - 88	4.3e-28	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	2 cut(s)	190, 236
AluI	AGCT	2 cut(s)	190, 236
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	4 cut(s)	49, 79, 133, 303
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmsI	GCATC	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	328
Bse21I	CCTNAGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	143
BseGI	GGATG	1 cut(s)	305
BseJI	GATNNNNATC	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	298, 354
BsrI	ACTGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	7, 272
BstEII	GGTNACC	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstPI	GGTNACC	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	305
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	2 cut(s)	57, 98
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	2 cut(s)	298, 354
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	436
CviAII	CATG	2 cut(s)	299, 355
CviJI	RGCY	5 cut(s)	59, 69, 97, 190, 236
CviKI_1	RGCY	5 cut(s)	59, 69, 97, 190, 236
DdeI	CTNAG	2 cut(s)	7, 272
EaeI	YGGCCR	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	71
FaeI	CATG	2 cut(s)	302, 358
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	2 cut(s)	298, 354
FauI	CCCGC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	302, 358
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	2 cut(s)	302, 454
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	299, 355
Hpy8I	GTNNAC	1 cut(s)	377
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	3 cut(s)	47, 349, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	2 cut(s)	7, 272
Hsp92II	CATG	2 cut(s)	302, 358
HspAI	GCGC	1 cut(s)	419
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	3 cut(s)	259, 309, 322
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	4 cut(s)	29, 171, 221, 429
MluNI	TGGCCA	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	134, 175, 252, 275, 278, 281
Mox20I	TGGCCA	1 cut(s)	59
Mph1103I	ATGCAT	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	3 cut(s)	381, 413, 478
Msp20I	TGGCCA	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	302, 358
NsiI	ATGCAT	1 cut(s)	49
PagI	TCATGA	2 cut(s)	298, 354
PfeI	GAWTC	2 cut(s)	302, 454
PkrI	GCNGC	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	381, 413, 478
SatI	GCNGC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	5 cut(s)	44, 186, 192, 238, 278
SfaNI	GCATC	1 cut(s)	56
SinI	GGWCC	1 cut(s)	436
Sse9I	AATT	4 cut(s)	29, 171, 221, 429
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	475
TasI	AATT	4 cut(s)	29, 171, 221, 429
TfiI	GAWTC	2 cut(s)	302, 454
Tru1I	TTAA	3 cut(s)	381, 413, 478
Tru9I	TTAA	3 cut(s)	381, 413, 478
TscAI	CASTG	2 cut(s)	57, 98
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	17, 294, 343
TspRI	CASTG	2 cut(s)	57, 98
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.