Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001924.1

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

95742 .. 96799

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001924.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgggaaaaggctggactttccttacccaacttcactctgttgctgggcctgtgttgcagctgctttaccccttgtatgcatcagtgatggccatagagagcccatcaaaactagatgatgagcagtggcttgcttattggattatttactctttcctcactctcttggagatggttatccaacccgctttagaatggttaccaatttggtatgaggtgaagcttgtgtttgtggcgtggttggttctaccacaattcaaaggggcagctttcttgtatgataaatatgtgagggagcaaatcctcaggtatagaggaggacaagaccatcatgattcatccagcaagtccccaactggcaaaggcaagagcaagtttgtgcagttcatgacccccaagagtggagagcaggaagcttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

140

Amino Acids

16.18

Weight (kDa)

6.83

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	4 cut(s)	61, 223, 269, 416
AluI	AGCT	4 cut(s)	61, 223, 269, 416
AoxI	GGCC	2 cut(s)	47, 90
ApeKI	GCWGC	3 cut(s)	58, 61, 266
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	48, 70, 278
BccI	CCATC	4 cut(s)	82, 112, 166, 336
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	3 cut(s)	59, 62, 267
BlsI	GCNGC	3 cut(s)	60, 63, 268
BmgT120I	GGNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	361
Bse21I	CCTNAGG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	176
BseGI	GGATG	1 cut(s)	338
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	48, 70, 278
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	49, 92
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	49, 92
Bsp1286I	GDGCHC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	49, 92
BspCNI	CTCAG	1 cut(s)	318
BspHI	TCATGA	2 cut(s)	331, 387
BsrI	ACTGG	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	305
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstPI	GGTNACC	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	48, 70, 278
Bsu36I	CCTNAGG	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	49, 92
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	90, 131
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	2 cut(s)	331, 387
Cfr13I	GGNCC	1 cut(s)	47
CviAII	CATG	2 cut(s)	332, 388
CviJI	RGCY	9 cut(s)	12, 49, 61, 92, 102, 130, 223, 269, 416
CviKI_1	RGCY	9 cut(s)	12, 49, 61, 92, 102, 130, 223, 269, 416
DdeI	CTNAG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	104
Eco81I	CCTNAGG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	2 cut(s)	335, 391
FaiI	YATR	8 cut(s)	78, 95, 213, 279, 288, 312, 333, 389
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	331, 387
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	59, 62, 267
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	59, 62, 267
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	3 cut(s)	59, 62, 267
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	49, 92
Hin1II	CATG	2 cut(s)	335, 391
HindIII	AAGCTT	2 cut(s)	221, 414
HinfI	GANTC	1 cut(s)	335
HphI	GGTGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	332, 388
HpyCH4V	TGCA	3 cut(s)	58, 80, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	335, 391
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	30, 63, 292, 342, 355, 395
Lsp1109I	GCAGC	3 cut(s)	48, 70, 278
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	204, 254
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	167, 208, 285, 308, 311, 314
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	335, 391
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	2 cut(s)	331, 387
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	60, 63, 268
PspEI	GGTNACC	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	61
SatI	GCNGC	3 cut(s)	59, 62, 267
Sau96I	GGNCC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	6 cut(s)	63, 219, 225, 271, 311, 418
SfaNI	GCATC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	204, 254
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	113
TasI	AATT	2 cut(s)	204, 254
TfiI	GAWTC	1 cut(s)	335
TscAI	CASTG	2 cut(s)	90, 131
TseI	GCWGC	3 cut(s)	58, 61, 266
TspDTI	ATGAA	2 cut(s)	327, 376
TspRI	CASTG	2 cut(s)	90, 131
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.