Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

13554477 .. 13555894

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G148300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGAAAAGCCTGGACCATGCTTACCCAACTTCATTCACTGGCTGGGCCAGTGGTGACGTTGCTTTACCCCTTATATGCATCAGTGATAGCCATAGAGAGCACATCTAAGATAGATGATGAGCAGTGGCTTGCTTATTGGATCATCTACTCTTTCCTCACTCTCTTGGAGATGGTAATCCAACCAGCTCTAGAGTGGTTACCAATTTGGTATGAAGTGAAGCTTGTGTTTGTGGCATGGTTGGTTCTTCCACAATTCCAAGGTGCAGCTTTCTTGTACGAGAAATATGTGAGACAGCAGCTCAGGAGGTATAGAGATGGGAGAGATCATCCTCAATCCTCCCAGAAGTCCCCCACTGGGAAAGGAAAGAACAAGTTTGTGCAGTTCATGACCCCCAAGAATCAGGGGGAGCAGGAGGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

142

Amino Acids

16.48

Weight (kDa)

8.78

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	4 cut(s)	188, 223, 269, 301
AluI	AGCT	4 cut(s)	188, 223, 269, 301
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	266, 298
AspS9I	GGNCC	2 cut(s)	15, 47
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	278, 310
BccI	CCATC	2 cut(s)	166, 311
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	267, 299
BlsI	GCNGC	2 cut(s)	268, 300
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	15, 47
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	3 cut(s)	45, 50, 361
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	3 cut(s)	45, 50, 361
BseXI	GCAGC	2 cut(s)	278, 310
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	2 cut(s)	285, 401
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	141, 325
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	387
BspPI	GGATC	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	45, 50, 361
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	141, 325
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	108, 302
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	2 cut(s)	144, 328
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	141, 325
BstNI	CCWGG	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	278, 310
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	5 cut(s)	38, 57, 90, 131, 354
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	387
Cfr13I	GGNCC	2 cut(s)	15, 47
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	19, 237, 388
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	108, 302
DpnI	GATC	2 cut(s)	143, 327
DpnII	GATC	2 cut(s)	141, 325
Eco130I	CCWWGG	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	22, 240, 391
FaiI	YATR	9 cut(s)	20, 76, 78, 95, 213, 238, 288, 312, 389
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	3 cut(s)	18, 236, 387
Fnu4HI	GCNGC	2 cut(s)	267, 299
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	267, 299
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	2 cut(s)	267, 299
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	3 cut(s)	22, 240, 391
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	400
HphI	GGTGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	191, 304, 388
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	80, 266, 382
HpyF3I	CTNAG	2 cut(s)	108, 302
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	22, 240, 391
Kzo9I	GATC	2 cut(s)	141, 325
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	2 cut(s)	278, 310
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	55, 198
MalI	GATC	2 cut(s)	143, 327
MboI	GATC	2 cut(s)	141, 325
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	2 cut(s)	204, 254
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	167, 300, 342, 349, 409
Mph1103I	ATGCAT	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	141, 325
NlaIII	CATG	3 cut(s)	22, 240, 391
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	268, 300
Psp6I	CCWGG	1 cut(s)	11
PspEI	GGTNACC	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	15, 47
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	2 cut(s)	267, 299
Sau3AI	GATC	2 cut(s)	141, 325
Sau96I	GGNCC	2 cut(s)	15, 47
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	7 cut(s)	62, 190, 225, 265, 271, 303, 311
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	2 cut(s)	204, 254
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	259
TaiI	ACGT	1 cut(s)	62
TasI	AATT	2 cut(s)	204, 254
TfiI	GAWTC	1 cut(s)	400
TscAI	CASTG	5 cut(s)	45, 57, 90, 131, 361
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	266, 298
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	23, 228, 376
TspRI	CASTG	5 cut(s)	45, 57, 90, 131, 361
VpaK11BI	GGWCC	1 cut(s)	15
XbaI	TCTAGA	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.