Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Forward (+)

4981870 .. 4983338

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGAAAAGGCTGGACTTTCCTTACCCAACTTCACTCTGTTGCTGGGCCTGTGTTGCAGCTGCTCTACCCTTTATATGCATCAGTGATGGCCATAGAGAGCACATCAAAGCTAGATGATGAGCAGTGGCTTGCTTATTGGATTATTTACTCTTTCCTCACTCTCTTGGAGATGGTTATCCAACCCGCTCTGGAATGGTTACCAATTTGGTATGAAGTGAAGCTTGTGTTTGTGGCATGGTTGGTTCTACCACAGTTCAAAGGAGCAGCTTTCTTGTATGACAAATATGTGAGGGAGCAAATCCTCAAGCATAGAGGAGGTAAAGACCATCATGATTCATCCAGCAAGTCCCCAAACGGCAAAGGCAAGAACAAGTTCGTACAGTTCATGACCCCCAAGAATGAAGAGCAAGAAGCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

141

Amino Acids

16.27

Weight (kDa)

6.91

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 99	6.8e-29	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	188
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	5 cut(s)	61, 112, 223, 269, 416
AluI	AGCT	5 cut(s)	61, 112, 223, 269, 416
Alw21I	GWGCWC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	47, 90
ApeKI	GCWGC	3 cut(s)	58, 61, 266
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	48, 70, 278
BccI	CCATC	3 cut(s)	82, 166, 336
BceAI	ACGGC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	3 cut(s)	59, 62, 267
BlsI	GCNGC	3 cut(s)	60, 63, 268
BmgT120I	GGNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	176
BseGI	GGATG	1 cut(s)	338
BseJI	GATNNNNATC	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	48, 70, 278
BseYI	CCCAGC	1 cut(s)	44
BshFI	GGCC	2 cut(s)	49, 92
BsiHKAI	GWGCWC	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	49, 92
Bsp1286I	GDGCHC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	49, 92
BspHI	TCATGA	2 cut(s)	331, 387
BspQI	GCTCTTC	1 cut(s)	399
BsrBI	CCGCTC	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	255, 384
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstPI	GGTNACC	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	48, 70, 278
BsuRI	GGCC	2 cut(s)	49, 92
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	90, 131
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	2 cut(s)	331, 387
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	3 cut(s)	237, 332, 388
CviJI	RGCY	9 cut(s)	12, 49, 61, 92, 112, 130, 223, 269, 416
CviKI_1	RGCY	9 cut(s)	12, 49, 61, 92, 112, 130, 223, 269, 416
CviQI	GTAC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	3 cut(s)	240, 335, 391
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	3 cut(s)	236, 331, 387
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	59, 62, 267
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	3 cut(s)	59, 62, 267
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	3 cut(s)	59, 62, 267
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	49, 92
Hin1II	CATG	3 cut(s)	240, 335, 391
HindIII	AAGCTT	2 cut(s)	221, 414
HinfI	GANTC	1 cut(s)	335
Hpy188III	TCNNGA	3 cut(s)	191, 332, 388
HpyCH4III	ACNGT	2 cut(s)	255, 384
HpyCH4V	TGCA	2 cut(s)	58, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
Hsp92II	CATG	3 cut(s)	240, 335, 391
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	263, 295
LpnPI	CCDG	4 cut(s)	30, 63, 176, 355
Lsp1109I	GCAGC	3 cut(s)	48, 70, 278
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	198
MbiI	CCGCTC	1 cut(s)	188
MboII	GAAGA	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	167, 285, 308, 311, 314
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	240, 335, 391
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	2 cut(s)	331, 387
PciSI	GCTCTTC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	60, 63, 268
PspEI	GGTNACC	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	399
SatI	GCNGC	3 cut(s)	59, 62, 267
Sau96I	GGNCC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	6 cut(s)	63, 114, 225, 271, 322, 418
SfaNI	GCATC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	255, 384
TasI	AATT	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	335
TscAI	CASTG	2 cut(s)	90, 131
TseI	GCWGC	3 cut(s)	58, 61, 266
TspDTI	ATGAA	4 cut(s)	228, 327, 376, 417
TspRI	CASTG	2 cut(s)	90, 131
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.