MD06G1138000.v1.1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0008990
Physical Location & Seq
Reverse (-)
28298596 .. 28299882
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1138000.v1.1.491

Sequence Viewer

Length: 423 bp
ATGGGAAAAGCTTGGACCTTTCTTACCCAACTTCACACACTTGCTGGGCCAGTGTTGACGTTGCTTTACCCTTTATATGCATCAGTGGTAGCAATAGAGAGCACATCCAAACTAGATGATGAGCAGTGGCTTGCTTATTGGATTATTTACTCTTTCCTCACTCTCATGGAGATGGTGCTACGACCAGCTCTTGAGTGGTTACCAATTTGGTATGATGTGAAGCTTGTGTTTGTGGCATGGTTGGTGCTGCCACAGTTCAAGGGGGCAGCTTTCTTGTATGAGAGATATGTGAGAGATCAAGTCAGAAAGTATGGAGGGTTGAAAGACCATCCGAAATCCGGCAAGACATCCCCCACTGGCAAAGCAAAGAAGAAGTTTATGCAGTTCCTGACCCCCAAGAATGGGGAGCAGGAGGCTTATTGA

Protein Analysis

141

Amino Acids

16.24

Weight (kDa)

9.35

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 98 4e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 3 cut(s) 338, 401, 402
AgsI TTSAA 2 cut(s) 259, 322
AluBI AGCT 4 cut(s) 11, 188, 223, 269
AluI AGCT 4 cut(s) 11, 188, 223, 269
Alw21I GWGCWC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 388
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 247, 266
AspS9I GGNCC 2 cut(s) 15, 47
AvaII GGWCC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 234, 278
BccI CCATC 2 cut(s) 166, 336
BfaI CTAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 248, 267
BlsI GCNGC 2 cut(s) 249, 268
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 15, 47
BmsI GCATC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 401, 402
Bse1I ACTGG 2 cut(s) 50, 361
BseGI GGATG 3 cut(s) 104, 328, 347
BseLI CCNNNNNNNGG 3 cut(s) 338, 401, 402
BseNI ACTGG 2 cut(s) 50, 361
BseXI GCAGC 2 cut(s) 234, 278
BseYI CCCAGC 1 cut(s) 44
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 338, 401, 402
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 295
BspANI GGCC 1 cut(s) 49
BsrI ACTGG 2 cut(s) 50, 361
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 198
BstF5I GGATG 3 cut(s) 104, 328, 347
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstPI GGTNACC 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 234, 278
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 104, 328, 347
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 4 cut(s) 57, 90, 131, 354
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 15, 47
CviAII CATG 2 cut(s) 166, 237
CviJI RGCY 7 cut(s) 11, 49, 130, 188, 223, 269, 416
CviKI_1 RGCY 7 cut(s) 11, 49, 130, 188, 223, 269, 416
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 15
Eco91I GGTNACC 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 82
FaeI CATG 2 cut(s) 169, 240
FaiI YATR 9 cut(s) 76, 78, 167, 213, 238, 279, 288, 312, 380
FatI CATG 2 cut(s) 165, 236
Fnu4HI GCNGC 2 cut(s) 248, 267
FokI GGATG 3 cut(s) 91, 315, 334
Fsp4HI GCNGC 2 cut(s) 248, 267
FspBI CTAG 1 cut(s) 113
GluI GCNGC 2 cut(s) 248, 267
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 339
Hin1II CATG 2 cut(s) 169, 240
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 2 cut(s) 9, 221
HpaII CCGG 1 cut(s) 339
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 305, 333
Hpy188III TCNNGA 2 cut(s) 191, 388
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 80, 382
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 2 cut(s) 169, 240
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 7 cut(s) 30, 63, 198, 342, 352, 395, 401
Lsp1109I GCAGC 2 cut(s) 234, 278
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 198
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 204
MnlI CCTC 3 cut(s) 167, 308, 406
Mph1103I ATGCAT 1 cut(s) 82
MslI CAYNNNNRTG 2 cut(s) 164, 170
MspI CCGG 1 cut(s) 339
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 169, 240
NsiI ATGCAT 1 cut(s) 82
PkrI GCNGC 2 cut(s) 249, 268
PspEI GGTNACC 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 44
PspPI GGNCC 2 cut(s) 15, 47
PstNI CAGNNNCTG 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 164, 170
SatI GCNGC 2 cut(s) 248, 267
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 2 cut(s) 15, 47
SduI GDGCHC 1 cut(s) 104
SetI ASST 6 cut(s) 13, 20, 62, 190, 225, 271
SfaNI GCATC 1 cut(s) 89
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 164, 170
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 204
SspMI CTAG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 1 cut(s) 62
TasI AATT 1 cut(s) 204
TscAI CASTG 4 cut(s) 57, 90, 131, 361
TseI GCWGC 2 cut(s) 247, 266
TspRI CASTG 4 cut(s) 57, 90, 131, 361
VpaK11BI GGWCC 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.