Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Forward (+)

48744954 .. 48762730

Gene Structure 17777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG335400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCCATAGATAGCACATCAAAACTAGATGATGAGCAGTGGCTTGCTTATTGGATTATTTACTCTTTCCTCACTGTCTTGGAGATGGTTATCCAACCCACTTTAGAATGGTATAGAGGAGGCAAAGACCATCATGATTTATCCAGCAAGTCCCCAAGTGGCAAAGGCAAGAACAGAGCTCAAGAAGTGATTTATCTTGGCAATAAATCACCAGTCACTACAATGCTCCCGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

78

Amino Acids

8.9

Weight (kDa)

5.55

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	2 - 37	2.1e-08	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	3
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BccI	CCATC	2 cut(s)	79, 138
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 72
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	1 cut(s)	133
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	5, 43, 179
CviKI_1	RGCY	3 cut(s)	5, 43, 179
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	1 cut(s)	137
FaiI	YATR	3 cut(s)	8, 114, 135
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	1 cut(s)	137
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	134, 182
HpyCH4III	ACNGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	2 cut(s)	157, 225
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	80, 110, 113
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
NciI	CCSGG	1 cut(s)	230
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	76
TscAI	CASTG	2 cut(s)	44, 79
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspRI	CASTG	2 cut(s)	44, 79
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.