Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008990

Physical Location & Seq

Genomic Coordinates Reverse (-)

83098562 .. 83101464

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCCATAGAGAGCGCATCAAAACTAGATGATGAGCAGTGGCTTGCTTATTGTATTATTTACTCTTTCCTCACTCTCTTGGAGACGGTTATCCAACCCACTTTAGAATGGTGTAGAGGAGGCAAAGACCATCATGATTTATCTAGCAAGTCCCGAAGTGGCAAAGATGTTCACTCAGAAGGGACTAATTATTGGACGCTTTCCGCGCAGACGTCCCATTTTGGAAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

5.69

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	2 - 38	1.4e-06	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24960 AT4G24960 AT4G24960 AT5G50720
fragaria_vesca	FvH4_5g08670 FvH4_5g08670
malus_domestica	MD06G1138000.v1.1 MD14G1153400.v1.1
prunus_persica	Prupe.5G148300_v2.0.a1 Prupe.5G148300_v2.0.a1
pyrus_communis	pycom06g12920 pycom14g12770
rosa_chinensis	RchiOBHm_Chr7g0189711
rosa_multiflora	Rmu_sc0001924.1_g000021
rosa_roxburghii	Rroxscaffold_1G00073990 Rroxscaffold_2G00145220 Rroxscaffold_3G00265240
rosa_rugosa	Rorug06G0499200
rosa_samantha	Rh3AG335400 Rh7AG104500 Rh7DG107500
rosa_wichuraiana	Rw7G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	206
AciI	CCGC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	212
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	2 cut(s)	17, 208
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	26, 144
BmsI	GCATC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	3 cut(s)	136, 196, 199
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	3 cut(s)	136, 196, 199
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	175, 231
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	17, 208
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	2 cut(s)	17, 208
CseI	GACGC	1 cut(s)	205
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	5, 43, 230
CviKI_1	RGCY	3 cut(s)	5, 43, 230
DdeI	CTNAG	2 cut(s)	175, 231
EaeI	YGGCCR	1 cut(s)	3
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	1 cut(s)	137
FaiI	YATR	2 cut(s)	8, 135
FaqI	GGGAC	3 cut(s)	136, 196, 199
FatI	CATG	1 cut(s)	133
FspBI	CTAG	2 cut(s)	26, 144
GlaI	GCGC	2 cut(s)	16, 207
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	2 cut(s)	17, 208
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	2 cut(s)	15, 206
HinP1I	GCGC	2 cut(s)	15, 206
HindIII	AAGCTT	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	134, 153
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	175, 231
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	2 cut(s)	15, 206
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	26, 144
MaeII	ACGT	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	80, 110, 113
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	133
SetI	ASST	2 cut(s)	215, 232
SfaNI	GCATC	1 cut(s)	26
SgeI	CNNG	8 cut(s)	38, 56, 91, 146, 156, 160, 165, 217
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	26, 144
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	215
TasI	AATT	1 cut(s)	187
TscAI	CASTG	1 cut(s)	44
TspRI	CASTG	1 cut(s)	44
XspI	CTAG	2 cut(s)	26, 144
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.