Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002359

Physical Location & Seq

Genomic Coordinates Reverse (-)

13191085 .. 13194124

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCCTCTTGTGCCTATAGCTTCGAGTTGGAAATGATGAAATCGCCGCCGTCAAACAACACTCCTTCACCGTCATCTACAATCTCTGAGACAAACTCTCCTCCGTTCTCAATCTCCACGAGAAGGCCACGAACTCCACGGAAACGTCCCAACCAAACATACGACGAAGCTGCGGCTCTCCTCTCCACCGCTTACCCTAAAATCTTCTCTTCCAAGAAGGCAAAAACTCAGATTTTCGGGACTAATAAATCTCCTCTCAGTGATTACGACGAAGCTTCTCAGTTGCTTCTTCCGTACGTATCCATCGAGGAGAACGAGTTTCTGTTCAATCCAACGATTCCAACGAAAACAGAACACTTCTTGGAGCAGAAGGAAGTCAGTTTTGATGACTTGGAGGTGAATGGGTTTGGAGTTTTAGACGATTTCGACGCGGAATCGATTTTAGATGAAGAGATTGAAGAAGGAATTGATAGTTTTATGGGGAATATTGAATCTAATGACGGAGATAGAGAAAATTGTTACAGAGTCGGTCGATTAGAGGAAATTATGAAGAATGCTTGGAACGGAAGGTTTCGTTTAGGGCTTGGTTTGAGAAGTTCTCTCCGACAAAACAACGACGAGAACTGGTGGAAATTTCCTACTGTGGAGTTTGATCAGATTTCGCCGAGAATTCAGACCACCGCCGCCGCAGCAGCTGATGATGGTCAATCCAATGTCGTGGATAGTAGCAAGATTAAAACGATTGTGACGGCGGAGGGAGACAAGAAAAAGAAAAAGAAGAAGAAGAAAAAGAAAGTGGCTCCGGCGGCGGCGGAATCAAAGAGCTCTGAAGTTACGGACTCGAATCCAAAGCTGGAGCAGAGAGTGAGTCCGTTGCTGAAGCTCGACTACGATGGGGTTTTAGAGGCTTGGTCAGGTAAGGAGTCACCGTTCTCCGACGAGATTCTTGGTTCGGACGCTGACGGAGTCGATTTTCATGTAAGGTTGGGTGAGATAGATTTGTTCGGAGAAAGTGGTATGAGAGAAGCAAGTGTGTTAAGGTATAAAGAGAAGCGGAGGAATAGACTCTTCTCCAAGAAAATCCGATATCAAGTTCGCAAGCTCAACGCCGACCAACGCCCGCGTATGAAGGGACGATTTGTGAGAAGGCCCAACGCAAGGAATTTAAGTGGTCTACGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

394

Amino Acids

44.58

Weight (kDa)

8.26

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	341 - 383	6.1e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25990 AT4G25990 AT4G25990 AT5G57180 AT5G57180 AT5G57180 AT5G57180
fragaria_vesca	FvH4_2g01490 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780
malus_domestica	MD13G1239300.v1.1 MD16G1248400.v1.1
prunus_persica	Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1
pyrus_communis	pycom13g21340 pycom16g20820
rosa_chinensis	RchiOBHm_Chr4g0399481
rosa_laevigata	RLG00000009263
rosa_multiflora	Rmu_sc0002285.1_g000032 Rmu_sc0004311.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344410
rosa_rugosa	Rorug04G0017200 Rorug04G0017300 Rorug04G0017300
rosa_samantha	Rh4AG095100 Rh4BG092500 Rh4CG103600 Rh4DG087400
rosa_wichuraiana	Rw4G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	1174
AccII	CGCG	2 cut(s)	431, 1123
AcsI	RAATTY	3 cut(s)	632, 669, 1162
AcuI	CTGAAG	2 cut(s)	849, 899
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	123, 1158
AgsI	TTSAA	3 cut(s)	328, 458, 491
AloI	GAACNNNNNNTCC	2 cut(s)	914, 946
AluBI	AGCT	8 cut(s)	21, 170, 275, 695, 825, 853, 883, 1102
AluI	AGCT	8 cut(s)	21, 170, 275, 695, 825, 853, 883, 1102
Alw21I	GWGCWC	1 cut(s)	827
Alw26I	GTCTC	2 cut(s)	83, 753
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	125, 1148
ApeKI	GCWGC	3 cut(s)	170, 689, 692
ApoI	RAATTY	3 cut(s)	632, 669, 1162
AspS9I	GGNCC	1 cut(s)	1149
AsuHPI	GGTGA	4 cut(s)	60, 409, 918, 1001
BanII	GRGCYC	1 cut(s)	827
BarI	GAAGNNNNNNTAC	2 cut(s)	872, 904
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	827
BbvI	GCAGC	3 cut(s)	157, 701, 704
BccI	CCATC	3 cut(s)	311, 695, 887
BceAI	ACGGC	2 cut(s)	34, 765
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciVI	GTATCC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	83, 753
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	9 cut(s)	47, 171, 174, 684, 687, 690, 693, 807, 810
BlsI	GCNGC	9 cut(s)	48, 172, 175, 685, 688, 691, 694, 808, 811
BmgT120I	GGNCC	1 cut(s)	1149
BmiI	GGNNCC	1 cut(s)	801
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 583, 615
BpmI	CTGGAG	1 cut(s)	875
Bsa29I	ATCGAT	1 cut(s)	437
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	6 cut(s)	82, 112, 302, 332, 914, 944
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 1158
Bse1I	ACTGG	1 cut(s)	629
BseCI	ATCGAT	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	123, 1158
BseMII	CTCAG	4 cut(s)	78, 242, 271, 293
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	4 cut(s)	90, 170, 243, 323
BseXI	GCAGC	3 cut(s)	157, 701, 704
Bsh1236I	CGCG	2 cut(s)	431, 1123
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	127, 1150
BshVI	ATCGAT	1 cut(s)	437
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	827
BsiSI	CCGG	1 cut(s)	803
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	3 cut(s)	132, 253, 1146
BslI	CCNNNNNNNGG	2 cut(s)	123, 1158
BsmAI	GTCTC	2 cut(s)	83, 753
BsmFI	GGGAC	3 cut(s)	132, 253, 1146
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	127, 1150
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp143I	GATC	1 cut(s)	652
BspANI	GGCC	2 cut(s)	127, 1150
BspCNI	CTCAG	4 cut(s)	79, 241, 270, 292
BspDI	ATCGAT	1 cut(s)	437
BspFNI	CGCG	2 cut(s)	431, 1123
BspLI	GGNNCC	1 cut(s)	801
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	652
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	72, 643, 930
Bst6I	CTCTTC	3 cut(s)	214, 444, 1073
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	1100, 1121
BstDEI	CTNAG	4 cut(s)	87, 228, 257, 279
BstDSI	CCRYGG	1 cut(s)	137
BstFNI	CGCG	2 cut(s)	431, 1123
BstKTI	GATC	1 cut(s)	655
BstMAI	GTCTC	2 cut(s)	83, 753
BstMBI	GATC	1 cut(s)	652
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	3 cut(s)	689, 692, 806
BstSFI	CTRYAG	1 cut(s)	16
BstSNI	TACGTA	1 cut(s)	298
BstUI	CGCG	2 cut(s)	431, 1123
BstV1I	GCAGC	3 cut(s)	157, 701, 704
BstXI	CCANNNNNNTGG	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	437
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	127, 1150
BsuTUI	ATCGAT	1 cut(s)	437
BtgI	CCRYGG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	1100, 1121
CaiI	CAGNNNCTG	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	1149
ClaI	ATCGAT	1 cut(s)	437
CseI	GACGC	2 cut(s)	437, 965
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	977
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	4 cut(s)	87, 228, 257, 279
DpnI	GATC	1 cut(s)	654
DpnII	GATC	1 cut(s)	652
Eam1104I	CTCTTC	3 cut(s)	214, 444, 1073
EarI	CTCTTC	3 cut(s)	214, 444, 1073
EciI	GGCGGA	2 cut(s)	767, 827
Ecl136II	GAGCTC	1 cut(s)	825
Eco105I	TACGTA	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	827
Eco32I	GATATC	1 cut(s)	1088
Eco53kI	GAGCTC	1 cut(s)	825
Eco57I	CTGAAG	2 cut(s)	849, 899
EcoICRI	GAGCTC	1 cut(s)	825
EcoRI	GAATTC	1 cut(s)	669
EcoRV	GATATC	1 cut(s)	1088
EcoT38I	GRGCYC	1 cut(s)	827
FaeI	CATG	1 cut(s)	980
FaiI	YATR	9 cut(s)	18, 160, 479, 548, 978, 1019, 1044, 1127, 1183
FaqI	GGGAC	3 cut(s)	132, 253, 1146
FatI	CATG	1 cut(s)	976
FauI	CCCGC	1 cut(s)	1128
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	1174
Fnu4HI	GCNGC	9 cut(s)	47, 171, 174, 684, 687, 690, 693, 807, 810
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	9 cut(s)	47, 171, 174, 684, 687, 690, 693, 807, 810
GluI	GCNGC	9 cut(s)	47, 171, 174, 684, 687, 690, 693, 807, 810
GsuI	CTGGAG	1 cut(s)	875
HaeIII	GGCC	2 cut(s)	127, 1150
HapII	CCGG	1 cut(s)	803
HgaI	GACGC	2 cut(s)	437, 965
Hin1II	CATG	1 cut(s)	980
HindIII	AAGCTT	1 cut(s)	273
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	4 cut(s)	60, 409, 918, 1001
Hpy166II	GTNNAC	1 cut(s)	1175
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	1175
Hpy99I	CGWCG	5 cut(s)	167, 272, 431, 620, 941
HpyAV	CCTTC	8 cut(s)	75, 117, 211, 364, 455, 561, 1123, 1140
HpyCH4III	ACNGT	3 cut(s)	72, 643, 930
HpyCH4IV	ACGT	2 cut(s)	145, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	689, 692, 806
HpyF3I	CTNAG	4 cut(s)	87, 228, 257, 279
HpySE526I	ACGT	2 cut(s)	145, 297
Hsp92II	CATG	1 cut(s)	980
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	1 cut(s)	652
LmnI	GCTCC	3 cut(s)	364, 805, 856
LpnPI	CCDG	4 cut(s)	610, 816, 839, 900
Lsp1109I	GCAGC	3 cut(s)	157, 701, 704
MaeII	ACGT	2 cut(s)	145, 297
MaeIII	GTNAC	4 cut(s)	518, 745, 832, 924
MalI	GATC	1 cut(s)	654
MboI	GATC	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	827
MluCI	AATT	6 cut(s)	465, 514, 543, 632, 669, 1162
MlyI	GAGTC	6 cut(s)	534, 833, 877, 932, 975, 1059
MmeI	TCCRAC	5 cut(s)	9, 356, 365, 628, 960
MseI	TTAA	3 cut(s)	735, 1037, 1166
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	1 cut(s)	803
Mva1269I	GAATGC	1 cut(s)	559
MvnI	CGCG	2 cut(s)	431, 1123
MwoI	GCNNNNNNNGC	3 cut(s)	689, 692, 806
NdeII	GATC	1 cut(s)	652
NlaIII	CATG	1 cut(s)	980
NlaIV	GGNNCC	1 cut(s)	801
NmeAIII	GCCGAG	1 cut(s)	690
NmuCI	GTSAC	2 cut(s)	745, 924
PcsI	WCGNNNNNNNCGW	3 cut(s)	303, 312, 341
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	6 cut(s)	337, 434, 491, 815, 844, 943
Pfl23II	CGTACG	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	965
PkrI	GCNGC	9 cut(s)	48, 172, 175, 685, 688, 691, 694, 808, 811
PleI	GAGTC	6 cut(s)	533, 833, 876, 931, 974, 1059
PpsI	GAGTC	6 cut(s)	533, 833, 876, 931, 974, 1059
Ppu21I	YACGTR	1 cut(s)	298
PsiI	TTATAA	1 cut(s)	1183
Psp124BI	GAGCTC	1 cut(s)	827
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	801
PspPI	GGNCC	1 cut(s)	1149
PstNI	CAGNNNCTG	1 cut(s)	695
PsyI	GACNNNGTC	1 cut(s)	965
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	827
SaqAI	TTAA	3 cut(s)	735, 1037, 1166
SatI	GCNGC	9 cut(s)	47, 171, 174, 684, 687, 690, 693, 807, 810
Sau3AI	GATC	1 cut(s)	652
Sau96I	GGNCC	1 cut(s)	1149
SchI	GAGTC	6 cut(s)	534, 833, 877, 932, 975, 1059
SduI	GDGCHC	1 cut(s)	827
SfcI	CTRYAG	1 cut(s)	16
SnaBI	TACGTA	1 cut(s)	298
Sse9I	AATT	6 cut(s)	465, 514, 543, 632, 669, 1162
SspI	AATATT	1 cut(s)	487
SstI	GAGCTC	1 cut(s)	827
TaaI	ACNGT	3 cut(s)	72, 643, 930
TaiI	ACGT	2 cut(s)	148, 300
TaqI	TCGA	8 cut(s)	24, 306, 426, 437, 532, 842, 885, 969
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	6 cut(s)	465, 514, 543, 632, 669, 1162
TauI	GCSGC	6 cut(s)	49, 176, 686, 689, 809, 812
TfiI	GAWTC	6 cut(s)	337, 434, 491, 815, 844, 943
Tru1I	TTAA	3 cut(s)	735, 1037, 1166
Tru9I	TTAA	3 cut(s)	735, 1037, 1166
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	745, 924
TseI	GCWGC	3 cut(s)	170, 689, 692
Tsp45I	GTSAC	2 cut(s)	745, 924
TspDTI	ATGAA	5 cut(s)	53, 462, 563, 965, 1142
TspGWI	ACGGA	8 cut(s)	93, 154, 282, 516, 579, 851, 861, 978
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	965
XapI	RAATTY	3 cut(s)	632, 669, 1162
XmiI	GTMKAC	1 cut(s)	1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.