FvH4_4g07270

Protein CHLOROPLAST IMPORT APPARATUS 2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
6675176 .. 6679826
4651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07270.t3

Sequence Viewer

Length: 1257 bp
ATGTCTTCGTGTTTTAGCGGTGGCGGAAGAACCTATGCATTTGAGCTTGACATAGTCAAATCCCCTTCCACTTCAACCCGGACTTCCCAAATTTCCTCCCCTTCCTCCACCCTCTCGGAATCAAGCAATTCCGCCCTCGCAATCTCAACCCGAAAACCCCGAACTCCTCGGAAACGTCCCAACCAGACTTACAATGAAGCCGCTGCATTACTCTCCACTGCTTACCCCAACATCTTCTCCACCAAAACCCTCACAAATCCTCGCAAATCCACCAAACCCCATGACTCCTTCCTCGACCCCTCATCTTCTGAATTACTCCTCCCTCTCCGACTCATCGACAATCCCGCCACTTTTCTCCTTCACAACCCAATTCTGGAAAAACCCAACTCCCGTTTCGAGCCGAAATCCATCAATTCGTTCGAAAAGTCCTGCAACTCTCCCGGGGAATTCAACTCCCCGGTGAACTTCGACTCCAATCCCAACTCCTCCATGGAGATATGTGACGACTTCGACGCGGAATCGATGTTGGACGAGGAGATTGAGGAGGGTATTGATAGCATCATGGGGAGTAGTACAACCAGCATGAACATAGACTCGGTCGACGAGTCGTCCACTACTACTAGTAGTGACCAAATGATGATGGGTTCATGTTATGGCTACCCAATGGGGTTGGGATTTGGCGGGAACTTGGAATTCGGGTTCGGATTCAGACGAGGAGGAGTGAGGCCGTTGAGGCAAGTTGACGATGGGGTGAACTGGTGGAGTTTCCCCACCGTCGATGTTCTTGAAATCTCGCCCAGATTCAACAAATCTCGGCCGTCGGCCGCGCCGCCTTCTGCGGGGAAGAAGAAGAAGAAGAAGATGGAGAAGCTGGCGGTGGTGGAGTCGAAGCTGGCGGAGAAGAGTGGTAGTCCGAAGACGAGTCAGAGTACGAAGGAGGAGGAGGAGGAGCCGGAAGCGGAGACTAGGCAGTTGATGCTGAAGCTGGACTACGACGACGTTTTGAATGCTTGGTCAGACAAAGCGTCGCCGTTCCCGGAGGAGCTTCAGGGCGGCGCTGATGGAAACGATGTCTCTGCCAGGCTGGCGCAGATTGATTTATTCACGGACGCCGGTGGATTGAGAGAGGCTAGCGTCCTCCGTTACAAAGAAAAGCGGCGTACACGCCTCTTCTCGAAAAAAATTAGGTATCAAGTCCGTAAAGTTAACGCTGATCGACGACCAAGAATGAAGATTTGTGAGAAGGCCAAACTCTAG

Protein Analysis

419

Amino Acids

46.29

Weight (kDa)

7.55

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 375 - 411 3.8e-13 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 600
AccII CGCG 2 cut(s) 515, 827
AcoI YGGCCR 2 cut(s) 815, 822
AcsI RAATTY 3 cut(s) 90, 446, 692
AcuI CTGAAG 2 cut(s) 1001, 1031
AcyI GRCGYC 1 cut(s) 1110
AfaI GTAC 3 cut(s) 574, 931, 1162
AfiI CCNNNNNNNGG 2 cut(s) 373, 839
AgsI TTSAA 5 cut(s) 75, 451, 788, 805, 1006
AhdI GACNNNNNGTC 2 cut(s) 607, 1024
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 1 cut(s) 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AloI GAACNNNNNNTCC 4 cut(s) 455, 487, 683, 715
AluBI AGCT 5 cut(s) 46, 871, 892, 985, 1045
AluI AGCT 5 cut(s) 46, 871, 892, 985, 1045
Alw26I GTCTC 2 cut(s) 956, 1078
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 4 cut(s) 725, 815, 822, 1245
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 90, 446, 692
AspLEI GCGC 3 cut(s) 829, 1058, 1090
AsuC2I CCSGG 5 cut(s) 79, 441, 442, 458, 1037
AsuHPI GGTGA 2 cut(s) 472, 763
AsuII TTCGAA 1 cut(s) 420
AsuNHI GCTAGC 1 cut(s) 1130
AvaI CYCGRG 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 974, 1006
BbsI GAAGAC 1 cut(s) 923
BbvI GCAGC 1 cut(s) 190
BccI CCATC 5 cut(s) 416, 634, 740, 856, 1055
BceAI ACGGC 3 cut(s) 712, 802, 1015
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 1 cut(s) 1081
BcnI CCSGG 5 cut(s) 79, 441, 442, 458, 1037
BcoDI GTCTC 2 cut(s) 956, 1078
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 4 cut(s) 621, 966, 1131, 1255
BfoI RGCGCY 1 cut(s) 1059
BglI GCCNNNNNGGC 2 cut(s) 733, 1085
BisI GCNGC 6 cut(s) 201, 204, 825, 830, 1054, 1157
BlsI GCNGC 6 cut(s) 202, 205, 826, 831, 1055, 1158
Bme1390I CCNGG 6 cut(s) 79, 441, 442, 458, 1037, 1081
BmeRI GACNNNNNGTC 2 cut(s) 607, 1024
BmeT110I CYCGRG 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 951
BmrFI CCNGG 6 cut(s) 79, 441, 442, 458, 1037, 1081
BmsI GCATC 2 cut(s) 567, 966
BmtI GCTAGC 1 cut(s) 1134
BpiI GAAGAC 1 cut(s) 923
Bpu14I TTCGAA 1 cut(s) 420
BpuMI CCSGG 5 cut(s) 79, 441, 442, 458, 1037
Bsa29I ATCGAT 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 1110
BsaJI CCNNGG 5 cut(s) 167, 440, 441, 456, 489
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 839
Bse118I RCCGGY 1 cut(s) 1112
Bse1I ACTGG 1 cut(s) 761
BseBI CCWGG 1 cut(s) 1081
BseCI ATCGAT 1 cut(s) 521
BseDI CCNNGG 5 cut(s) 167, 440, 441, 456, 489
BseLI CCNNNNNNNGG 2 cut(s) 373, 839
BseNI ACTGG 1 cut(s) 761
BseX3I CGGCCG 2 cut(s) 815, 822
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 2 cut(s) 515, 827
Bsh1285I CGRYCG 3 cut(s) 600, 818, 825
BshFI GGCC 4 cut(s) 727, 817, 824, 1247
BshVI ATCGAT 1 cut(s) 521
BsiEI CGRYCG 3 cut(s) 600, 818, 825
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 6 cut(s) 79, 441, 458, 953, 1037, 1113
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 373, 839
BsmAI GTCTC 2 cut(s) 956, 1078
BsmFI GGGAC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 1012
BsnI GGCC 4 cut(s) 727, 817, 824, 1247
BsoBI CYCGRG 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 420
Bsp143I GATC 1 cut(s) 1213
Bsp19I CCATGG 1 cut(s) 489
BspANI GGCC 4 cut(s) 727, 817, 824, 1247
BspDI ATCGAT 1 cut(s) 521
BspFNI CGCG 2 cut(s) 515, 827
BspLI GGNNCC 1 cut(s) 951
BspOI GCTAGC 1 cut(s) 1134
BspT104I TTCGAA 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 1112
BsrI ACTGG 1 cut(s) 761
BssAI RCCGGY 1 cut(s) 1112
BssECI CCNNGG 5 cut(s) 167, 440, 441, 456, 489
BssMI GATC 1 cut(s) 1213
BssNI GRCGYC 1 cut(s) 1110
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 1081
Bst4CI ACNGT 1 cut(s) 775
Bst6I CTCTTC 2 cut(s) 896, 1175
BstACI GRCGYC 1 cut(s) 1110
BstAPI GCANNNNNTGC 1 cut(s) 976
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 4 cut(s) 873, 894, 1086, 1132
BstDSI CCRYGG 1 cut(s) 489
BstFNI CGCG 2 cut(s) 515, 827
BstH2I RGCGCY 1 cut(s) 1059
BstHHI GCGC 3 cut(s) 829, 1058, 1090
BstKTI GATC 1 cut(s) 1216
BstMAI GTCTC 2 cut(s) 956, 1078
BstMBI GATC 1 cut(s) 1213
BstMCI CGRYCG 3 cut(s) 600, 818, 825
BstMWI GCNNNNNNNGC 3 cut(s) 733, 976, 1085
BstNI CCWGG 1 cut(s) 1081
BstSCI CCNGG 6 cut(s) 77, 439, 440, 456, 1035, 1079
BstUI CGCG 2 cut(s) 515, 827
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 923
BstZI CGGCCG 2 cut(s) 815, 822
Bsu15I ATCGAT 1 cut(s) 521
BsuRI GGCC 4 cut(s) 727, 817, 824, 1247
BsuTUI ATCGAT 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 489
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 873, 894, 1086, 1132
CfoI GCGC 3 cut(s) 829, 1058, 1090
Cfr10I RCCGGY 1 cut(s) 1112
Cfr9I CCCGGG 1 cut(s) 440
ClaI ATCGAT 1 cut(s) 521
CseI GACGC 4 cut(s) 521, 1014, 1118, 1123
Csp6I GTAC 3 cut(s) 573, 930, 1161
CviAII CATG 5 cut(s) 281, 490, 562, 583, 648
CviQI GTAC 3 cut(s) 573, 930, 1161
DpnI GATC 1 cut(s) 1215
DpnII GATC 1 cut(s) 1213
DriI GACNNNNNGTC 2 cut(s) 607, 1024
EaeI YGGCCR 2 cut(s) 815, 822
EagI CGGCCG 2 cut(s) 815, 822
Eam1104I CTCTTC 2 cut(s) 896, 1175
Eam1105I GACNNNNNGTC 2 cut(s) 607, 1024
EarI CTCTTC 2 cut(s) 896, 1175
EciI GGCGGA 3 cut(s) 39, 121, 911
EclXI CGGCCG 2 cut(s) 815, 822
Eco130I CCWWGG 1 cut(s) 489
Eco52I CGGCCG 2 cut(s) 815, 822
Eco57I CTGAAG 2 cut(s) 1001, 1031
Eco88I CYCGRG 1 cut(s) 440
EcoRI GAATTC 2 cut(s) 446, 692
EcoRII CCWGG 1 cut(s) 1079
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 5 cut(s) 284, 493, 565, 586, 651
FaqI GGGAC 1 cut(s) 162
FatI CATG 5 cut(s) 280, 489, 561, 582, 647
FauI CCCGC 3 cut(s) 352, 674, 832
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 6 cut(s) 201, 204, 825, 830, 1054, 1157
Fsp4HI GCNGC 6 cut(s) 201, 204, 825, 830, 1054, 1157
FspBI CTAG 4 cut(s) 621, 966, 1131, 1255
GlaI GCGC 3 cut(s) 828, 1057, 1089
GluI GCNGC 6 cut(s) 201, 204, 825, 830, 1054, 1157
HaeII RGCGCY 1 cut(s) 1059
HaeIII GGCC 4 cut(s) 727, 817, 824, 1247
HapII CCGG 6 cut(s) 79, 441, 458, 953, 1037, 1113
HgaI GACGC 4 cut(s) 521, 1014, 1118, 1123
HhaI GCGC 3 cut(s) 829, 1058, 1090
Hin1I GRCGYC 1 cut(s) 1110
Hin1II CATG 5 cut(s) 284, 493, 565, 586, 651
Hin6I GCGC 3 cut(s) 827, 1056, 1088
HinP1I GCGC 3 cut(s) 827, 1056, 1088
HincII GTYRAC 3 cut(s) 601, 742, 1207
HindII GTYRAC 3 cut(s) 601, 742, 1207
HpaI GTTAAC 1 cut(s) 1207
HpaII CCGG 6 cut(s) 79, 441, 458, 953, 1037, 1113
HphI GGTGA 2 cut(s) 472, 763
Hpy166II GTNNAC 7 cut(s) 463, 601, 612, 742, 754, 1163, 1207
Hpy188I TCNGA 9 cut(s) 118, 171, 310, 329, 704, 710, 915, 927, 1018
Hpy188III TCNNGA 3 cut(s) 374, 785, 1174
Hpy8I GTNNAC 7 cut(s) 463, 601, 612, 742, 754, 1163, 1207
Hpy99I CGWCG 8 cut(s) 515, 605, 779, 823, 998, 1001, 1030, 1221
HpyAV CCTTC 7 cut(s) 75, 111, 298, 368, 843, 928, 1237
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 2 cut(s) 175, 999
HpyCH4V TGCA 3 cut(s) 38, 206, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 733, 976, 1085
HpySE526I ACGT 2 cut(s) 175, 999
Hsp92I GRCGYC 1 cut(s) 1110
Hsp92II CATG 5 cut(s) 284, 493, 565, 586, 651
HspAI GCGC 3 cut(s) 827, 1056, 1088
KspAI GTTAAC 1 cut(s) 1207
Kzo9I GATC 1 cut(s) 1213
LmnI GCTCC 2 cut(s) 949, 1042
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 567, 966
MaeI CTAG 4 cut(s) 621, 966, 1131, 1255
MaeII ACGT 2 cut(s) 175, 999
MaeIII GTNAC 3 cut(s) 500, 626, 1142
MalI GATC 1 cut(s) 1215
MboI GATC 1 cut(s) 1213
MluCI AATT 8 cut(s) 90, 127, 311, 369, 412, 446, 692, 1182
MlyI GAGTC 7 cut(s) 278, 324, 464, 587, 614, 893, 931
MmeI TCCRAC 2 cut(s) 352, 507
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 1 cut(s) 1206
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 6 cut(s) 79, 441, 458, 953, 1037, 1113
MspR9I CCNGG 6 cut(s) 79, 441, 442, 458, 1037, 1081
Mva1269I GAATGC 1 cut(s) 1012
MvaI CCWGG 1 cut(s) 1081
MvnI CGCG 2 cut(s) 515, 827
MwoI GCNNNNNNNGC 3 cut(s) 733, 976, 1085
NciI CCSGG 5 cut(s) 79, 441, 442, 458, 1037
NcoI CCATGG 1 cut(s) 489
NdeII GATC 1 cut(s) 1213
NheI GCTAGC 1 cut(s) 1130
NlaIII CATG 5 cut(s) 284, 493, 565, 586, 651
NlaIV GGNNCC 1 cut(s) 951
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 2 cut(s) 500, 626
NsiI ATGCAT 1 cut(s) 40
NspV TTCGAA 1 cut(s) 420
PctI GAATGC 1 cut(s) 1012
PfeI GAWTC 4 cut(s) 119, 518, 705, 801
PflFI GACNNNGTC 2 cut(s) 53, 596
PfoI TCCNGGA 1 cut(s) 1035
PkrI GCNGC 6 cut(s) 202, 205, 826, 831, 1055, 1158
PleI GAGTC 7 cut(s) 278, 324, 464, 587, 613, 892, 930
PpsI GAGTC 7 cut(s) 278, 324, 464, 587, 613, 892, 930
Psp6I CCWGG 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1079
PspN4I GGNNCC 1 cut(s) 951
PsyI GACNNNGTC 2 cut(s) 53, 596
RsaI GTAC 3 cut(s) 574, 931, 1162
RsaNI GTAC 3 cut(s) 573, 930, 1161
SalI GTCGAC 1 cut(s) 599
SaqAI TTAA 1 cut(s) 1206
SatI GCNGC 6 cut(s) 201, 204, 825, 830, 1054, 1157
Sau3AI GATC 1 cut(s) 1213
SchI GAGTC 7 cut(s) 278, 324, 464, 587, 614, 893, 931
ScrFI CCNGG 6 cut(s) 79, 441, 442, 458, 1037, 1081
SetI ASST 9 cut(s) 35, 48, 178, 873, 894, 987, 1002, 1047, 1190
SfaNI GCATC 2 cut(s) 567, 966
SfuI TTCGAA 1 cut(s) 420
SgrAI CRCCGGYG 1 cut(s) 1112
SmaI CCCGGG 1 cut(s) 442
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 8 cut(s) 90, 127, 311, 369, 412, 446, 692, 1182
SspMI CTAG 4 cut(s) 621, 966, 1131, 1255
StyD4I CCNGG 6 cut(s) 77, 439, 440, 456, 1035, 1079
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 2 cut(s) 178, 1002
TaqII GACCGA 1 cut(s) 586
TasI AATT 8 cut(s) 90, 127, 311, 369, 412, 446, 692, 1182
TatI WGTACW 1 cut(s) 572
TauI GCSGC 5 cut(s) 203, 827, 832, 1056, 1159
TfiI GAWTC 4 cut(s) 119, 518, 705, 801
Tru1I TTAA 1 cut(s) 1206
Tru9I TTAA 1 cut(s) 1206
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 500, 626
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 2 cut(s) 500, 626
TspDTI ATGAA 4 cut(s) 210, 599, 636, 1244
TspGWI ACGGA 3 cut(s) 1121, 1130, 1187
TspMI CCCGGG 1 cut(s) 440
TspRI CASTG 1 cut(s) 223
Tth111I GACNNNGTC 2 cut(s) 53, 596
XapI RAATTY 3 cut(s) 90, 446, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmaI CCCGGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 600
XspI CTAG 4 cut(s) 621, 966, 1131, 1255
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.