Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002359

Physical Location & Seq

Genomic Coordinates Forward (+)

15872345 .. 15876707

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCTTCGTGTTTTAGCGGTGGCGGAAGGACCTATGCATTTGAGCTTGACATAGTCAAATCCCCTTCCACTTCAACCCGGACTTCACAAACATCCTCACCTTCTTCCACTCTCTCGGAATCAAGCAATTCGGCACTCGCAATCTCCACCCGAAAACCCCGCACCCCTCGAAAACGTCCCAACCAGACTTACAATGAAGCCGCTGCATTACTCTCCACTGCTTACCCCAACGTCTTCTCCACCAAAATCCTCACAAATCCTCGCAAATCCACCAAACCCCACCACGACTCCTTCCTCGACCCATCTTCCGAACTGCTCCTCCCTTTCAGACTCATCGACAATTCCGCCACTTTCCTCCTCCACAACCCCATCCGAGAAAAACCCAATTCTCGATTCGAGCCCAAAGCCATCAATTCATTTGAAAAGTCTTGTCATTCGCCCGGGGAGTTCAATTCCCCGGTGAATTTCGACTCCAATCCCAACTCCTCCATGGAGCTATGCGATGACTTCGACGCGGAATCTATGCTGGACGAGGAAATTGAGGAGGGTATTGATAGTATCATGGGGAGTAGCACCAGCATGAACATGAACATCGATTCCGTCGATGAGTCCACTAGCAGTGACCCAATGATGACGACGGACTCCTGCTATGGCTACCCAATGGGGTTGGGATTTGGCGGGAATTTCGAACTCGGGTTCGGATTCAGAAGAGGAGGAGTGAGACCGTTGAGGCAAGTCGACGATGGAGTGAATTGGTGGAGTTTCCCGACCGTCGATGTTGTTGAAATCTCGCCCAGATTCAACAAATCTCGGCCGTCCGTTCCGGCTCCGTCGGCCCCACCTTCTGCCGGGAAGAAGAAGAAGAAGAAGATGGAGAAGCTAGCGGTGGTGGAGTCCAAGCTGGCCGAGTTGCCGCTAAAGGAGAAGATCAGTCCGAACCCGAAGGAGGAGTCGGAGCCTGGCGGGCTGATGCTGAAGCTGGACTACGACGACGTTTTGAGTGCTTGGTCCGACAAAGCGTCGCCGTTTACGGAGGAGTTGCAGGGCGGCGCTGATGGAAACGACGTCTCTGTATGTTTCTCATCTCTCGCCAGGAAATCAAATTCCAGCAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

372

Amino Acids

40.62

Weight (kDa)

5.37

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25990 AT4G25990 AT4G25990 AT5G57180 AT5G57180 AT5G57180 AT5G57180
fragaria_vesca	FvH4_2g01490 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780
malus_domestica	MD13G1239300.v1.1 MD16G1248400.v1.1
prunus_persica	Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1
pyrus_communis	pycom13g21340 pycom16g20820
rosa_chinensis	RchiOBHm_Chr4g0399481
rosa_laevigata	RLG00000009263
rosa_multiflora	Rmu_sc0002285.1_g000032 Rmu_sc0004311.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344410
rosa_rugosa	Rorug04G0017200 Rorug04G0017300 Rorug04G0017300
rosa_samantha	Rh4AG095100 Rh4BG092500 Rh4CG103600 Rh4DG087400
rosa_wichuraiana	Rw4G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1068
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	1 cut(s)	515
AcoI	YGGCCR	2 cut(s)	812, 903
AcsI	RAATTY	3 cut(s)	463, 682, 1102
AcuI	CTGAAG	1 cut(s)	995
AcyI	GRCGYC	1 cut(s)	1065
AfiI	CCNNNNNNNGG	2 cut(s)	848, 946
AgsI	TTSAA	5 cut(s)	75, 422, 451, 785, 802
AhdI	GACNNNNNGTC	1 cut(s)	1018
AjnI	CCWGG	2 cut(s)	958, 1091
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AloI	GAACNNNNNNTCC	4 cut(s)	303, 335, 581, 613
AluBI	AGCT	5 cut(s)	46, 496, 880, 901, 979
AluI	AGCT	5 cut(s)	46, 496, 880, 901, 979
Alw26I	GTCTC	2 cut(s)	715, 1072
Ama87I	CYCGRG	2 cut(s)	440, 692
AoxI	GGCC	3 cut(s)	812, 834, 903
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	463, 682, 1102
ArsI	GACNNNNNNTTYG	2 cut(s)	935, 967
AspLEI	GCGC	1 cut(s)	1052
AspS9I	GGNCC	3 cut(s)	30, 835, 1008
AsuC2I	CCSGG	5 cut(s)	79, 441, 442, 458, 850
AsuHPI	GGTGA	2 cut(s)	90, 472
AsuII	TTCGAA	1 cut(s)	687
AsuNHI	GCTAGC	1 cut(s)	880
AvaI	CYCGRG	2 cut(s)	440, 692
AvaII	GGWCC	2 cut(s)	30, 1008
BanII	GRGCYC	1 cut(s)	402
BarI	GAAGNNNNNNTAC	2 cut(s)	968, 1000
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	6 cut(s)	310, 377, 416, 737, 865, 1049
BceAI	ACGGC	2 cut(s)	799, 1009
BciT130I	CCWGG	2 cut(s)	960, 1093
BcnI	CCSGG	5 cut(s)	79, 441, 442, 458, 850
BcoDI	GTCTC	2 cut(s)	715, 1072
BfaI	CTAG	2 cut(s)	615, 881
BfoI	RGCGCY	1 cut(s)	1053
BglI	GCCNNNNNGGC	1 cut(s)	964
BisI	GCNGC	4 cut(s)	201, 204, 914, 1048
BlsI	GCNGC	4 cut(s)	202, 205, 915, 1049
Bme1390I	CCNGG	7 cut(s)	79, 441, 442, 458, 850, 960, 1093
Bme18I	GGWCC	2 cut(s)	30, 1008
BmeRI	GACNNNNNGTC	1 cut(s)	1018
BmeT110I	CYCGRG	2 cut(s)	440, 692
BmgT120I	GGNCC	3 cut(s)	30, 835, 1008
BmiI	GGNNCC	3 cut(s)	828, 837, 957
BmrFI	CCNGG	7 cut(s)	79, 441, 442, 458, 850, 960, 1093
BmsI	GCATC	1 cut(s)	960
BmtI	GCTAGC	1 cut(s)	884
BpiI	GAAGAC	1 cut(s)	226
Bpu14I	TTCGAA	1 cut(s)	687
BpuMI	CCSGG	5 cut(s)	79, 441, 442, 458, 850
Bsa29I	ATCGAT	1 cut(s)	594
BsaHI	GRCGYC	1 cut(s)	1065
BsaI	GGTCTC	1 cut(s)	715
BsaJI	CCNNGG	4 cut(s)	440, 441, 456, 489
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 272, 302, 303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	848, 946
BseBI	CCWGG	2 cut(s)	960, 1093
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	4 cut(s)	440, 441, 456, 489
BseGI	GGATG	2 cut(s)	92, 369
BseLI	CCNNNNNNNGG	2 cut(s)	848, 946
BseRI	GAGGAG	8 cut(s)	308, 347, 475, 557, 726, 729, 962, 1049
BseX3I	CGGCCG	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	515
Bsh1285I	CGRYCG	2 cut(s)	771, 815
BshFI	GGCC	3 cut(s)	814, 836, 905
BshVI	ATCGAT	1 cut(s)	594
BsiEI	CGRYCG	2 cut(s)	771, 815
BsiHKCI	CYCGRG	2 cut(s)	440, 692
BsiSI	CCGG	5 cut(s)	79, 441, 458, 824, 849
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	848, 946
BsmAI	GTCTC	2 cut(s)	715, 1072
BsmBI	CGTCTC	1 cut(s)	1072
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	814, 836, 905
Bso31I	GGTCTC	1 cut(s)	715
BsoBI	CYCGRG	2 cut(s)	440, 692
Bsp119I	TTCGAA	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	927
Bsp19I	CCATGG	1 cut(s)	489
BspANI	GGCC	3 cut(s)	814, 836, 905
BspDI	ATCGAT	1 cut(s)	594
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	3 cut(s)	828, 837, 957
BspOI	GCTAGC	1 cut(s)	884
BspT104I	TTCGAA	1 cut(s)	687
BspTNI	GGTCTC	1 cut(s)	715
BssECI	CCNNGG	4 cut(s)	440, 441, 456, 489
BssMI	GATC	1 cut(s)	927
BssNI	GRCGYC	1 cut(s)	1065
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	960, 1093
Bst4CI	ACNGT	2 cut(s)	726, 772
Bst6I	CTCTTC	1 cut(s)	703
BstACI	GRCGYC	1 cut(s)	1065
BstBI	TTCGAA	1 cut(s)	687
BstC8I	GCNNGC	3 cut(s)	882, 903, 965
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	92, 369
BstFNI	CGCG	1 cut(s)	515
BstH2I	RGCGCY	1 cut(s)	1053
BstHHI	GCGC	1 cut(s)	1052
BstKTI	GATC	1 cut(s)	930
BstMAI	GTCTC	2 cut(s)	715, 1072
BstMBI	GATC	1 cut(s)	927
BstMCI	CGRYCG	2 cut(s)	771, 815
BstMWI	GCNNNNNNNGC	2 cut(s)	833, 964
BstNI	CCWGG	2 cut(s)	960, 1093
BstSCI	CCNGG	7 cut(s)	77, 439, 440, 456, 848, 958, 1091
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	226
BstZI	CGGCCG	1 cut(s)	812
Bsu15I	ATCGAT	1 cut(s)	594
BsuRI	GGCC	3 cut(s)	814, 836, 905
BsuTUI	ATCGAT	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	489
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	92, 369
BtsI	GCAGTG	2 cut(s)	216, 625
BtsIMutI	CAGTG	2 cut(s)	216, 625
Cac8I	GCNNGC	3 cut(s)	882, 903, 965
CfoI	GCGC	1 cut(s)	1052
Cfr13I	GGNCC	3 cut(s)	30, 835, 1008
Cfr9I	CCCGGG	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	594
CseI	GACGC	2 cut(s)	521, 1008
CviAII	CATG	4 cut(s)	490, 562, 580, 586
DpnI	GATC	1 cut(s)	929
DpnII	GATC	1 cut(s)	927
DriI	GACNNNNNGTC	1 cut(s)	1018
EaeI	YGGCCR	2 cut(s)	812, 903
EagI	CGGCCG	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	703
Eam1105I	GACNNNNNGTC	1 cut(s)	1018
EarI	CTCTTC	1 cut(s)	703
EciI	GGCGGA	2 cut(s)	39, 334
EclXI	CGGCCG	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	30, 1008
Eco52I	CGGCCG	1 cut(s)	812
Eco57I	CTGAAG	1 cut(s)	995
Eco88I	CYCGRG	2 cut(s)	440, 692
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	958, 1091
EcoT14I	CCWWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	489
Esp3I	CGTCTC	1 cut(s)	1072
FaeI	CATG	4 cut(s)	493, 565, 583, 589
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	4 cut(s)	489, 561, 579, 585
FauI	CCCGC	3 cut(s)	167, 671, 956
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	4 cut(s)	201, 204, 914, 1048
FokI	GGATG	2 cut(s)	79, 356
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	4 cut(s)	201, 204, 914, 1048
FspBI	CTAG	2 cut(s)	615, 881
GlaI	GCGC	1 cut(s)	1051
GluI	GCNGC	4 cut(s)	201, 204, 914, 1048
HaeII	RGCGCY	1 cut(s)	1053
HaeIII	GGCC	3 cut(s)	814, 836, 905
HapII	CCGG	5 cut(s)	79, 441, 458, 824, 849
HgaI	GACGC	2 cut(s)	521, 1008
HhaI	GCGC	1 cut(s)	1052
Hin1I	GRCGYC	1 cut(s)	1065
Hin1II	CATG	4 cut(s)	493, 565, 583, 589
Hin6I	GCGC	1 cut(s)	1050
HinP1I	GCGC	1 cut(s)	1050
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HpaII	CCGG	5 cut(s)	79, 441, 458, 824, 849
HphI	GGTGA	2 cut(s)	90, 472
Hpy166II	GTNNAC	3 cut(s)	612, 739, 1029
Hpy188I	TCNGA	9 cut(s)	118, 310, 329, 374, 701, 707, 936, 955, 1012
Hpy188III	TCNNGA	2 cut(s)	390, 766
Hpy8I	GTNNAC	3 cut(s)	612, 739, 1029
HpyAV	CCTTC	6 cut(s)	21, 75, 111, 301, 852, 937
HpyCH4III	ACNGT	2 cut(s)	726, 772
HpyCH4IV	ACGT	4 cut(s)	175, 231, 993, 1065
HpyCH4V	TGCA	3 cut(s)	38, 206, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	833, 964
HpySE526I	ACGT	4 cut(s)	175, 231, 993, 1065
Hsp92I	GRCGYC	1 cut(s)	1065
Hsp92II	CATG	4 cut(s)	493, 565, 583, 589
HspAI	GCGC	1 cut(s)	1050
Kzo9I	GATC	1 cut(s)	927
LmnI	GCTCC	4 cut(s)	321, 493, 832, 955
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	960
MaeI	CTAG	2 cut(s)	615, 881
MaeII	ACGT	4 cut(s)	175, 231, 993, 1065
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	1 cut(s)	929
MboI	GATC	1 cut(s)	927
MhlI	GDGCHC	1 cut(s)	402
MlyI	GAGTC	7 cut(s)	281, 324, 464, 617, 635, 902, 959
MmeI	TCCRAC	2 cut(s)	933, 1035
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	1 cut(s)	1117
MslI	CAYNNNNRTG	2 cut(s)	578, 584
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	5 cut(s)	79, 441, 458, 824, 849
MspR9I	CCNGG	7 cut(s)	79, 441, 442, 458, 850, 960, 1093
MvaI	CCWGG	2 cut(s)	960, 1093
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	833, 964
NciI	CCSGG	5 cut(s)	79, 441, 442, 458, 850
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	1 cut(s)	927
NheI	GCTAGC	1 cut(s)	880
NlaIII	CATG	4 cut(s)	493, 565, 583, 589
NlaIV	GGNNCC	3 cut(s)	828, 837, 957
NmeAIII	GCCGAG	2 cut(s)	790, 931
NmuCI	GTSAC	1 cut(s)	620
NsiI	ATGCAT	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PfeI	GAWTC	6 cut(s)	119, 393, 518, 596, 702, 798
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	202, 205, 915, 1049
PleI	GAGTC	7 cut(s)	281, 324, 464, 616, 635, 901, 958
PpsI	GAGTC	7 cut(s)	281, 324, 464, 616, 635, 901, 958
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	958, 1091
PspGI	CCWGG	2 cut(s)	958, 1091
PspN4I	GGNNCC	3 cut(s)	828, 837, 957
PspPI	GGNCC	3 cut(s)	30, 835, 1008
PspPPI	RGGWCCY	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	53
RseI	CAYNNNNRTG	2 cut(s)	578, 584
SalI	GTCGAC	1 cut(s)	737
SaqAI	TTAA	1 cut(s)	1117
SatI	GCNGC	4 cut(s)	201, 204, 914, 1048
Sau3AI	GATC	1 cut(s)	927
Sau96I	GGNCC	3 cut(s)	30, 835, 1008
SchI	GAGTC	7 cut(s)	281, 324, 464, 617, 635, 902, 959
ScrFI	CCNGG	7 cut(s)	79, 441, 442, 458, 850, 960, 1093
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	960
SfuI	TTCGAA	1 cut(s)	687
SinI	GGWCC	2 cut(s)	30, 1008
SmaI	CCCGGG	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	578, 584
SspMI	CTAG	2 cut(s)	615, 881
StyD4I	CCNGG	7 cut(s)	77, 439, 440, 456, 848, 958, 1091
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	726, 772
TaiI	ACGT	4 cut(s)	178, 234, 996, 1068
TauI	GCSGC	3 cut(s)	203, 916, 1050
TfiI	GAWTC	6 cut(s)	119, 393, 518, 596, 702, 798
Tru1I	TTAA	1 cut(s)	1117
Tru9I	TTAA	1 cut(s)	1117
TscAI	CASTG	2 cut(s)	223, 625
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	4 cut(s)	210, 405, 596, 602
TspGWI	ACGGA	5 cut(s)	589, 653, 808, 819, 1046
TspMI	CCCGGG	1 cut(s)	440
TspRI	CASTG	2 cut(s)	223, 625
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	30, 1008
XapI	RAATTY	3 cut(s)	463, 682, 1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmaI	CCCGGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	2 cut(s)	615, 881
ZraI	GACGTC	1 cut(s)	1066
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.