Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002359

Physical Location & Seq

Genomic Coordinates Forward (+)

23167774 .. 23171025

Gene Structure 3252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTCGGCGTGTTTAAGCAGCGGAGGAGGAGGAGCAGCAGCATATAGTTTCGAGTTAGAAAAAGTGAAATCACCACCACCATCATCCTCAACAACAACAACAAGAGCTACTTCACCATCATCAACAATCTCCGAATCATCAAATTCACCACTCGCAATCTCAACGAGAAAGCCAAGAACACAACGCAAAAGACCAAACCAGACTTACAACGAAGCAGCTACTCTTCTCTCTACTGCTTATCCCAACATCTTCTCCTCAAACTTGTCCTCTAAGCAAAAAACTCACTCTTCATCAAACTCTCACTTCTACGGGCCATTGCTTAGTGACAACGACGACGCTTCTGATTTGCTTCTTCCTTATGAATCAATCGAAGAACCTGATTTTCTGTTTCATCCAACGATTCAAACGAAAACAGAGTTTTTCTCAGACCAGAAGGAAGTTAACTCCGGTGGAGATTGCTACGGTGGTGAAATCGAAAAGTTTGATTTCTCCGACGAATTCGATGCTGAATCGATTCTCGATGAGGATATTGAAGAAGGAATCGATAGTATAATGGGGACTGTGGTGGAATCGAATTCAAATTCGGGGATTTATGAATCTAGGGTTCCGGGAATGATCAATCGCGGTGGAAGAAGTTCTTCTAATCGGATTGGTAAACTAGAACAGATGATGATGATCAATTCATGGAATCGAAGCTCTAACGGATTCAATTTCCCGTTAGGGCTTGGATTACGAAGTGCTCTCAGAGAAAACGACGACACAAAATTGTGGAAGATTCATACCGTTGATTTCGAACAGATCTCGCCGCGAATTCAAACTGTCAAAACCGAAACTGCAATCTCCACCGTTGATGAGGAGAAATCCGACGGTAAGAAGGTGGTAATCTCTGGAGAGAAGAGTAATAAGAAGAAGAAGAAGAAGAAAATGACGGTGACGACGACATTGATTACGGAATCGAAAAGCTTGGAAGATACGGAGGAGACGAGTTTGAAGAGAACAGGTCCGTTGTTGAAGCTTGATTACGACGGCGTTTTGGAAGCTTGGTCTGATAAAACGTCGCCGTTTCCCGACGAGATTCAGGGATCGGAAGCTGTCGATGTCAATGCTAGATTAGCTCAGATTGATTTGTTCGGAGACAGTGGAATGCGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTCGAACTCGTCTTTTTTCGAAGAAAATTCGATACCAAGTTCGCAAACTCAATGCTGATCAACGTCCTCGAATGAAGGTATCTAACCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

424

Amino Acids

47.07

Weight (kDa)

6.02

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25990 AT4G25990 AT4G25990 AT5G57180 AT5G57180 AT5G57180 AT5G57180
fragaria_vesca	FvH4_2g01490 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780
malus_domestica	MD13G1239300.v1.1 MD16G1248400.v1.1
prunus_persica	Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1
pyrus_communis	pycom13g21340 pycom16g20820
rosa_chinensis	RchiOBHm_Chr4g0399481
rosa_laevigata	RLG00000009263
rosa_multiflora	Rmu_sc0002285.1_g000032 Rmu_sc0004311.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344410
rosa_rugosa	Rorug04G0017200 Rorug04G0017300 Rorug04G0017300
rosa_samantha	Rh4AG095100 Rh4BG092500 Rh4CG103600 Rh4DG087400
rosa_wichuraiana	Rw4G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	624, 808
AciI	CCGC	3 cut(s)	21, 624, 806
AclWI	GGATC	1 cut(s)	1090
AcsI	RAATTY	6 cut(s)	142, 497, 574, 580, 810, 1206
AfaI	GTAC	1 cut(s)	1169
AgsI	TTSAA	7 cut(s)	404, 533, 579, 709, 815, 991, 1012
AluBI	AGCT	8 cut(s)	107, 218, 696, 963, 1015, 1040, 1091, 1115
AluI	AGCT	8 cut(s)	107, 218, 696, 963, 1015, 1040, 1091, 1115
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	974, 1128
AlwI	GGATC	1 cut(s)	1090
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	4 cut(s)	18, 35, 38, 215
ApoI	RAATTY	6 cut(s)	142, 497, 574, 580, 810, 1206
Asp700I	GAANNNNTTC	3 cut(s)	513, 634, 637
AspS9I	GGNCC	2 cut(s)	311, 1001
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	5 cut(s)	63, 105, 138, 479, 943
AsuII	TTCGAA	2 cut(s)	792, 1199
AvaII	GGWCC	1 cut(s)	1001
BarI	GAAGNNNNNNTAC	2 cut(s)	1004, 1036
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	4 cut(s)	30, 47, 50, 227
BccI	CCATC	2 cut(s)	88, 124
BceAI	ACGGC	2 cut(s)	1042, 1045
BcgI	CGANNNNNNTGC	4 cut(s)	485, 519, 1085, 1119
BclI	TGATCA	3 cut(s)	615, 675, 1237
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	974, 1128
BfaI	CTAG	3 cut(s)	600, 659, 1107
BglII	AGATCT	1 cut(s)	798
BisI	GCNGC	5 cut(s)	19, 36, 39, 216, 806
BlsI	GCNGC	5 cut(s)	20, 37, 40, 217, 807
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	1001
BmgT120I	GGNCC	2 cut(s)	311, 1001
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	493
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	909
Bpu14I	TTCGAA	2 cut(s)	792, 1199
BpuMI	CCSGG	1 cut(s)	609
Bsa29I	ATCGAT	2 cut(s)	512, 543
BsaBI	GATNNNNATC	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse3DI	GCAATG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	674
BseCI	ATCGAT	2 cut(s)	512, 543
BseGI	GGATG	2 cut(s)	83, 391
BseJI	GATNNNNATC	1 cut(s)	674
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	3 cut(s)	438, 757, 1130
BseRI	GAGGAG	6 cut(s)	39, 42, 45, 244, 869, 992
BseXI	GCAGC	4 cut(s)	30, 47, 50, 227
Bsh1236I	CGCG	2 cut(s)	624, 808
BshFI	GGCC	1 cut(s)	313
BshVI	ATCGAT	2 cut(s)	512, 543
BsiHKAI	GWGCWC	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	447, 608
BslFI	GGGAC	1 cut(s)	571
BsmAI	GTCTC	2 cut(s)	974, 1128
BsmBI	CGTCTC	1 cut(s)	974
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	1149
BsnI	GGCC	1 cut(s)	313
Bsp119I	TTCGAA	2 cut(s)	792, 1199
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	5 cut(s)	615, 675, 798, 1082, 1237
BspACI	CCGC	3 cut(s)	21, 624, 806
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	3 cut(s)	437, 756, 1129
BspDI	ATCGAT	2 cut(s)	512, 543
BspFNI	CGCG	2 cut(s)	624, 808
BspLI	GGNNCC	1 cut(s)	606
BspPI	GGATC	1 cut(s)	1090
BspT104I	TTCGAA	2 cut(s)	792, 1199
BsrDI	GCAATG	1 cut(s)	314
BssMI	GATC	5 cut(s)	615, 675, 798, 1082, 1237
Bst4CI	ACNGT	8 cut(s)	464, 562, 784, 820, 847, 869, 931, 1139
Bst6I	CTCTTC	4 cut(s)	228, 292, 890, 986
BstBI	TTCGAA	2 cut(s)	792, 1199
BstDEI	CTNAG	6 cut(s)	270, 320, 424, 743, 1116, 1272
BstF5I	GGATG	2 cut(s)	83, 391
BstFNI	CGCG	2 cut(s)	624, 808
BstKTI	GATC	5 cut(s)	618, 678, 801, 1085, 1240
BstMAI	GTCTC	2 cut(s)	974, 1128
BstMBI	GATC	5 cut(s)	615, 675, 798, 1082, 1237
BstMWI	GCNNNNNNNGC	1 cut(s)	1112
BstSCI	CCNGG	1 cut(s)	607
BstUI	CGCG	2 cut(s)	624, 808
BstV1I	GCAGC	4 cut(s)	30, 47, 50, 227
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
Bsu15I	ATCGAT	2 cut(s)	512, 543
BsuRI	GGCC	1 cut(s)	313
BsuTUI	ATCGAT	2 cut(s)	512, 543
BtsCI	GGATG	2 cut(s)	83, 391
BtsIMutI	CAGTG	1 cut(s)	1144
Cfr13I	GGNCC	2 cut(s)	311, 1001
ClaI	ATCGAT	2 cut(s)	512, 543
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	1168
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	1 cut(s)	684
CviQI	GTAC	1 cut(s)	1168
DdeI	CTNAG	6 cut(s)	270, 320, 424, 743, 1116, 1272
DpnI	GATC	5 cut(s)	617, 677, 800, 1084, 1239
DpnII	GATC	5 cut(s)	615, 675, 798, 1082, 1237
Eam1104I	CTCTTC	4 cut(s)	228, 292, 890, 986
EarI	CTCTTC	4 cut(s)	228, 292, 890, 986
Eco47I	GGWCC	1 cut(s)	1001
EcoRI	GAATTC	3 cut(s)	497, 574, 810
Esp3I	CGTCTC	1 cut(s)	974
FaeI	CATG	1 cut(s)	687
FaiI	YATR	7 cut(s)	43, 45, 360, 551, 594, 685, 780
FalI	AAGNNNNNCTT	4 cut(s)	94, 126, 622, 654
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	1 cut(s)	683
FbaI	TGATCA	3 cut(s)	615, 675, 1237
Fnu4HI	GCNGC	5 cut(s)	19, 36, 39, 216, 806
FokI	GGATG	2 cut(s)	70, 378
Fsp4HI	GCNGC	5 cut(s)	19, 36, 39, 216, 806
FspBI	CTAG	3 cut(s)	600, 659, 1107
GluI	GCNGC	5 cut(s)	19, 36, 39, 216, 806
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	2 cut(s)	447, 608
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	3 cut(s)	961, 1013, 1038
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	447, 608
HphI	GGTGA	5 cut(s)	63, 105, 138, 479, 943
Hpy166II	GTNNAC	2 cut(s)	442, 656
Hpy188III	TCNNGA	3 cut(s)	518, 888, 1067
Hpy8I	GTNNAC	2 cut(s)	442, 656
HpyAV	CCTTC	4 cut(s)	427, 530, 868, 1249
HpyCH4III	ACNGT	8 cut(s)	464, 562, 784, 820, 847, 869, 931, 1139
HpyCH4IV	ACGT	3 cut(s)	1055, 1180, 1243
HpyCH4V	TGCA	1 cut(s)	836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1112
HpyF3I	CTNAG	6 cut(s)	270, 320, 424, 743, 1116, 1272
HpySE526I	ACGT	3 cut(s)	1055, 1180, 1243
Hsp92II	CATG	1 cut(s)	687
Ksp22I	TGATCA	3 cut(s)	615, 675, 1237
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	5 cut(s)	615, 675, 798, 1082, 1237
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	8 cut(s)	212, 390, 443, 460, 621, 873, 984, 1064
Lsp1109I	GCAGC	4 cut(s)	30, 47, 50, 227
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	600, 659, 1107
MaeII	ACGT	3 cut(s)	1055, 1180, 1243
MaeIII	GTNAC	2 cut(s)	323, 931
MalI	GATC	5 cut(s)	617, 677, 800, 1084, 1239
MboI	GATC	5 cut(s)	615, 675, 798, 1082, 1237
MflI	RGATCY	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	9 cut(s)	142, 497, 574, 580, 679, 709, 764, 810, 1206
MmeI	TCCRAC	3 cut(s)	419, 516, 888
MroXI	GAANNNNTTC	3 cut(s)	513, 634, 637
MseI	TTAA	2 cut(s)	14, 441
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	2 cut(s)	447, 608
MspR9I	CCNGG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	1149
MvnI	CGCG	2 cut(s)	624, 808
MwoI	GCNNNNNNNGC	1 cut(s)	1112
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	5 cut(s)	615, 675, 798, 1082, 1237
NlaIII	CATG	1 cut(s)	687
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	2 cut(s)	323, 931
NspV	TTCGAA	2 cut(s)	792, 1199
PcsI	WCGNNNNNNNCGW	4 cut(s)	404, 935, 980, 1186
PctI	GAATGC	1 cut(s)	1149
PdmI	GAANNNNTTC	3 cut(s)	513, 634, 637
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	5 cut(s)	20, 37, 40, 217, 807
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	2 cut(s)	311, 1001
PsuI	RGATCY	1 cut(s)	798
RsaI	GTAC	1 cut(s)	1169
RsaNI	GTAC	1 cut(s)	1168
SaqAI	TTAA	2 cut(s)	14, 441
SatI	GCNGC	5 cut(s)	19, 36, 39, 216, 806
Sau3AI	GATC	5 cut(s)	615, 675, 798, 1082, 1237
Sau96I	GGNCC	2 cut(s)	311, 1001
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	742
SfaNI	GCATC	1 cut(s)	493
SfuI	TTCGAA	2 cut(s)	792, 1199
SinI	GGWCC	1 cut(s)	1001
Sse9I	AATT	9 cut(s)	142, 497, 574, 580, 679, 709, 764, 810, 1206
SsiI	CCGC	3 cut(s)	21, 624, 806
SspMI	CTAG	3 cut(s)	600, 659, 1107
StyD4I	CCNGG	1 cut(s)	607
TaaI	ACNGT	8 cut(s)	464, 562, 784, 820, 847, 869, 931, 1139
TaiI	ACGT	3 cut(s)	1058, 1183, 1246
TasI	AATT	9 cut(s)	142, 497, 574, 580, 679, 709, 764, 810, 1206
TauI	GCSGC	1 cut(s)	808
Tru1I	TTAA	2 cut(s)	14, 441
Tru9I	TTAA	2 cut(s)	14, 441
TscAI	CASTG	1 cut(s)	1144
TseFI	GTSAC	2 cut(s)	323, 931
TseI	GCWGC	4 cut(s)	18, 35, 38, 215
Tsp45I	GTSAC	2 cut(s)	323, 931
TspDTI	ATGAA	7 cut(s)	279, 375, 380, 609, 672, 767, 1268
TspGWI	ACGGA	4 cut(s)	717, 965, 989, 993
TspRI	CASTG	1 cut(s)	1144
VpaK11BI	GGWCC	1 cut(s)	1001
XapI	RAATTY	6 cut(s)	142, 497, 574, 580, 810, 1206
XmnI	GAANNNNTTC	3 cut(s)	513, 634, 637
XspI	CTAG	3 cut(s)	600, 659, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.