pycom16g20820

Protein CHLOROPLAST IMPORT APPARATUS 2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
18866277 .. 18868968
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20820.3

Sequence Viewer

Length: 1302 bp
ATGTCTTCGTGTCTAAGAGGCGGCGGAAGAACCTATGCCTTCGAGCTTGACATAGTCAAATCGCCGTCCACATCAACCTTCACCTCCACCTCTTCTCCGTCCTCAACTCTCTCGGAATCCAGCAACTCCGGCCTCGCAATCTCGACGAGAAAACCTCGTACCCCTCGAAAACGGCCAAACCAAACATACAACGAAGCCGCCGCATTGCTCTCCACAGCGTACCCCAACATCTTCTCTTCCAAGAACTTCACAAATCCCAGAAAATTCACTAAACCCCACGACTCTTTCTTCGACCAATCCCCAGAATTGCTCCTGCCCTTCAGAGTCATCGAAGCCGAAAATGCCGGGTTCTTGCTCCACCTCCCAATCCGGGAAAAACCCAGTTCCCAATTCGAGCCCAAGTCCCTGAATTCGTTCGAGAAGCCGTGCCGGAGTCCCGGGGAATTCGATTCCCAGCCGAATTGCAATTCCGATTCCATGGAGTTGTGCGACGTGTACAATTTTCAAGAGGAAGACTTCGATGCGGAGTCGATTCTCGACGAGGAAATTGAAGAGGGGATTGATAGCATCATGGGAAGTATGAGTGTGAACATGGACTTGGAGGATGAGTCTACAAATGGAGGTGCGCAAATGAATAATTCGAATCCGAACTGGAATTCCTGTTATGGGTACCCAATGGGGCTCGGATTTGGCGGGAAATTCGAATTCGGGTTCGGGTCGAGAAGAGGAGTGAAGCCGTTGAGGCACGTCGATAATGGGAACTGGTGGAGTTTTCCCACCGTCGATGTTCTCGAAATCTCCCCCAGATTCAACAAATCTCAGTCGTGTTCCGCTCCGGCTCCAGCCGCGGCCACAGCCGGGAAGAAGAAGAAGAAGAAGGTGGAGAAGCTGTCGGTGTTGGAAAGGAGAACCGCGGCGGAATTGCCGAAGGAGGCGAATCCGATTCCGAAGCCCCCGGCGGAGGAGGAGCCCGGGCTGATGCTAAAACTGGACTACGACGACGTTTTGAATGCTTGGTCGGACAAAGCGTCGCCGTTTTCGGAGGAAATGCCGGGATCTGATGCAGCGGCGGGGAATGATGTATCTGTCAGGTTGGCGCATATTGATTTATTCTCGGATGTCGGAGGACTGAGGGAGGCTAGCGTGTTGCGCTACAAGGAGAAACGTCGTACCCGTCTCTACTCTAAAAAGATCAGATACCAAGTTAGAAAAGCCAATGCCGATCGACGACCTAGAATGAAGGGAAGATTTGTTAGAAGGCCACATTCTAGCACAAACGTTCAAAGACAAAAGGAAATATGA

Protein Analysis

434

Amino Acids

48.34

Weight (kDa)

8.57

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 627
Acc65I GGTACC 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 669
AccBSI CCGCTC 1 cut(s) 833
AccI GTMKAC 1 cut(s) 611
AccII CGCG 2 cut(s) 848, 914
AclI AACGTT 1 cut(s) 1278
AclWI GGATC 1 cut(s) 1063
AcoI YGGCCR 2 cut(s) 173, 849
AcsI RAATTY 6 cut(s) 263, 409, 443, 655, 698, 704
AcuI CTGAAG 1 cut(s) 304
AfaI GTAC 5 cut(s) 160, 221, 497, 671, 1171
AfiI CCNNNNNNNGG 4 cut(s) 370, 666, 858, 961
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 5 cut(s) 506, 551, 811, 1009, 1283
AhdI GACNNNNNGTC 1 cut(s) 1027
AjiI CACGTC 2 cut(s) 493, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AloI GAACNNNNNNTCC 2 cut(s) 641, 673
AluBI AGCT 2 cut(s) 46, 889
AluI AGCT 2 cut(s) 46, 889
Alw26I GTCTC 1 cut(s) 1181
AlwI GGATC 1 cut(s) 1063
Ama87I CYCGRG 2 cut(s) 437, 971
AoxI GGCC 4 cut(s) 130, 173, 849, 1259
ApeKI GCWGC 1 cut(s) 1064
ApoI RAATTY 6 cut(s) 263, 409, 443, 655, 698, 704
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 669
AspLEI GCGC 3 cut(s) 628, 1099, 1152
AsuC2I CCSGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 2 cut(s) 641, 702
AsuNHI GCTAGC 1 cut(s) 1139
AvaI CYCGRG 2 cut(s) 437, 971
BanI GGYRCC 1 cut(s) 669
BanII GRGCYC 3 cut(s) 399, 684, 972
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 1076
BceAI ACGGC 5 cut(s) 49, 188, 409, 721, 1018
BcnI CCSGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
BcoDI GTCTC 1 cut(s) 1181
BfaI CTAG 3 cut(s) 1140, 1233, 1269
BglI GCCNNNNNGGC 1 cut(s) 742
BisI GCNGC 8 cut(s) 22, 198, 201, 846, 849, 915, 1065, 1068
BlsI GCNGC 8 cut(s) 23, 199, 202, 847, 850, 916, 1066, 1069
Bme1390I CCNGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
BmeRI GACNNNNNGTC 1 cut(s) 1027
BmeT110I CYCGRG 2 cut(s) 437, 971
BmgBI CACGTC 2 cut(s) 493, 748
BmiI GGNNCC 3 cut(s) 671, 840, 969
BmrFI CCNGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 4 cut(s) 511, 576, 969, 1051
BmtI GCTAGC 1 cut(s) 1143
BmuI ACTGGG 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 519
BplI GAGNNNNNCTC 2 cut(s) 139, 171
BpmI CTGGAG 1 cut(s) 825
Bpu14I TTCGAA 2 cut(s) 641, 702
BpuMI CCSGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
BsaJI CCNNGG 7 cut(s) 437, 438, 477, 846, 912, 954, 971
BsaXI ACNNNNNCTCC 6 cut(s) 79, 109, 593, 623, 875, 905
Bsc4I CCNNNNNNNGG 4 cut(s) 370, 666, 858, 961
Bse1I ACTGG 4 cut(s) 381, 656, 767, 993
Bse3DI GCAATG 1 cut(s) 203
BseDI CCNNGG 7 cut(s) 437, 438, 477, 846, 912, 954, 971
BseGI GGATG 2 cut(s) 610, 1123
BseLI CCNNNNNNNGG 4 cut(s) 370, 666, 858, 961
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 833, 1121
BseNI ACTGG 4 cut(s) 381, 656, 767, 993
BseRI GAGGAG 3 cut(s) 741, 977, 980
BseXI GCAGC 1 cut(s) 1076
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 848, 914
Bsh1285I CGRYCG 1 cut(s) 1225
BshFI GGCC 4 cut(s) 132, 175, 851, 1261
BshNI GGYRCC 1 cut(s) 669
BsiEI CGRYCG 1 cut(s) 1225
BsiHKCI CYCGRG 2 cut(s) 437, 971
BslFI GGGAC 2 cut(s) 388, 420
BslI CCNNNNNNNGG 4 cut(s) 370, 666, 858, 961
BsmAI GTCTC 1 cut(s) 1181
BsmBI CGTCTC 1 cut(s) 1181
BsmFI GGGAC 2 cut(s) 388, 420
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 4 cut(s) 132, 175, 851, 1261
BsoBI CYCGRG 2 cut(s) 437, 971
Bsp119I TTCGAA 2 cut(s) 641, 702
Bsp1286I GDGCHC 3 cut(s) 399, 684, 972
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 3 cut(s) 1055, 1191, 1222
Bsp19I CCATGG 1 cut(s) 477
BspANI GGCC 4 cut(s) 132, 175, 851, 1261
BspCNI CTCAG 2 cut(s) 832, 1122
BspFNI CGCG 2 cut(s) 848, 914
BspLI GGNNCC 3 cut(s) 671, 840, 969
BspOI GCTAGC 1 cut(s) 1143
BspPI GGATC 1 cut(s) 1063
BspT104I TTCGAA 2 cut(s) 641, 702
BspT107I GGYRCC 1 cut(s) 669
BsrBI CCGCTC 1 cut(s) 833
BsrDI GCAATG 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 4 cut(s) 381, 656, 767, 993
BssECI CCNNGG 7 cut(s) 437, 438, 477, 846, 912, 954, 971
BssMI GATC 3 cut(s) 1055, 1191, 1222
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 781
Bst6I CTCTTC 4 cut(s) 97, 241, 546, 718
BstAUI TGTACA 1 cut(s) 495
BstBI TTCGAA 2 cut(s) 641, 702
BstC8I GCNNGC 1 cut(s) 1141
BstDEI CTNAG 3 cut(s) 14, 819, 1130
BstDSI CCRYGG 3 cut(s) 477, 846, 912
BstF5I GGATG 2 cut(s) 610, 1123
BstFNI CGCG 2 cut(s) 848, 914
BstHHI GCGC 3 cut(s) 628, 1099, 1152
BstKTI GATC 3 cut(s) 1058, 1194, 1225
BstMAI GTCTC 1 cut(s) 1181
BstMBI GATC 3 cut(s) 1055, 1191, 1222
BstMCI CGRYCG 1 cut(s) 1225
BstMWI GCNNNNNNNGC 6 cut(s) 129, 341, 742, 845, 854, 1149
BstSCI CCNGG 9 cut(s) 344, 369, 436, 437, 857, 954, 970, 971, 1051
BstUI CGCG 2 cut(s) 848, 914
BstV1I GCAGC 1 cut(s) 1076
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 1055
BstYI RGATCY 1 cut(s) 1055
BsuRI GGCC 4 cut(s) 132, 175, 851, 1261
BtgI CCRYGG 3 cut(s) 477, 846, 912
BtrI CACGTC 2 cut(s) 493, 748
BtsCI GGATG 2 cut(s) 610, 1123
Cac8I GCNNGC 1 cut(s) 1141
CfoI GCGC 3 cut(s) 628, 1099, 1152
Cfr42I CCGCGG 2 cut(s) 849, 915
Cfr9I CCCGGG 2 cut(s) 437, 971
CseI GACGC 1 cut(s) 1017
Csp6I GTAC 5 cut(s) 159, 220, 496, 670, 1170
CviAII CATG 3 cut(s) 478, 571, 592
CviQI GTAC 5 cut(s) 159, 220, 496, 670, 1170
DdeI CTNAG 3 cut(s) 14, 819, 1130
DpnI GATC 3 cut(s) 1057, 1193, 1224
DpnII GATC 3 cut(s) 1055, 1191, 1222
DriI GACNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 2 cut(s) 173, 849
Eam1104I CTCTTC 4 cut(s) 97, 241, 546, 718
Eam1105I GACNNNNNGTC 1 cut(s) 1027
EarI CTCTTC 4 cut(s) 97, 241, 546, 718
EciI GGCGGA 3 cut(s) 39, 932, 974
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 3 cut(s) 399, 684, 972
Eco57I CTGAAG 1 cut(s) 304
Eco88I CYCGRG 2 cut(s) 437, 971
EcoRI GAATTC 4 cut(s) 409, 443, 655, 704
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 3 cut(s) 399, 684, 972
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 1181
FaeI CATG 3 cut(s) 481, 574, 595
FaqI GGGAC 2 cut(s) 388, 420
FatI CATG 3 cut(s) 477, 570, 591
FauI CCCGC 2 cut(s) 686, 1063
FblI GTMKAC 1 cut(s) 611
Fnu4HI GCNGC 8 cut(s) 22, 198, 201, 846, 849, 915, 1065, 1068
FokI GGATG 2 cut(s) 617, 1130
FriOI GRGCYC 3 cut(s) 399, 684, 972
Fsp4HI GCNGC 8 cut(s) 22, 198, 201, 846, 849, 915, 1065, 1068
FspBI CTAG 3 cut(s) 1140, 1233, 1269
FspI TGCGCA 1 cut(s) 627
GlaI GCGC 3 cut(s) 627, 1098, 1151
GluI GCNGC 8 cut(s) 22, 198, 201, 846, 849, 915, 1065, 1068
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 4 cut(s) 132, 175, 851, 1261
HgaI GACGC 1 cut(s) 1017
HhaI GCGC 3 cut(s) 628, 1099, 1152
Hin1II CATG 3 cut(s) 481, 574, 595
Hin6I GCGC 3 cut(s) 626, 1097, 1150
HinP1I GCGC 3 cut(s) 626, 1097, 1150
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 4 cut(s) 69, 496, 589, 612
Hpy188III TCNNGA 6 cut(s) 142, 418, 506, 536, 720, 791
Hpy8I GTNNAC 4 cut(s) 69, 496, 589, 612
HpyAV CCTTC 7 cut(s) 49, 88, 328, 871, 922, 1234, 1251
HpyCH4III ACNGT 1 cut(s) 781
HpyCH4IV ACGT 5 cut(s) 492, 747, 1002, 1165, 1278
HpyCH4V TGCA 2 cut(s) 465, 1064
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 341, 742, 845, 854, 1149
HpyF3I CTNAG 3 cut(s) 14, 819, 1130
HpySE526I ACGT 5 cut(s) 492, 747, 1002, 1165, 1278
Hsp92II CATG 3 cut(s) 481, 574, 595
HspAI GCGC 3 cut(s) 626, 1097, 1150
KpnI GGTACC 1 cut(s) 673
KspI CCGCGG 2 cut(s) 849, 915
Kzo9I GATC 3 cut(s) 1055, 1191, 1222
LmnI GCTCC 5 cut(s) 315, 360, 838, 844, 967
Lsp1109I GCAGC 1 cut(s) 1076
LweI GCATC 4 cut(s) 511, 576, 969, 1051
MaeI CTAG 3 cut(s) 1140, 1233, 1269
MaeII ACGT 5 cut(s) 492, 747, 1002, 1165, 1278
MalI GATC 3 cut(s) 1057, 1193, 1224
MbiI CCGCTC 1 cut(s) 833
MboI GATC 3 cut(s) 1055, 1191, 1222
MflI RGATCY 1 cut(s) 1055
MhlI GDGCHC 3 cut(s) 399, 684, 972
MlyI GAGTC 5 cut(s) 275, 333, 442, 536, 617
MmeI TCCRAC 3 cut(s) 879, 999, 1102
MroXI GAANNNNTTC 1 cut(s) 413
MspA1I CMGCKG 3 cut(s) 848, 914, 1067
MspR9I CCNGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
Mva1269I GAATGC 1 cut(s) 1015
MvnI CGCG 2 cut(s) 848, 914
MwoI GCNNNNNNNGC 6 cut(s) 129, 341, 742, 845, 854, 1149
NciI CCSGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
NcoI CCATGG 1 cut(s) 477
NdeII GATC 3 cut(s) 1055, 1191, 1222
NheI GCTAGC 1 cut(s) 1139
NlaIII CATG 3 cut(s) 481, 574, 595
NlaIV GGNNCC 3 cut(s) 671, 840, 969
NsbI TGCGCA 1 cut(s) 627
NspV TTCGAA 2 cut(s) 641, 702
PcsI WCGNNNNNNNCGW 4 cut(s) 163, 789, 1025, 1171
PctI GAATGC 1 cut(s) 1015
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 8 cut(s) 116, 449, 473, 532, 643, 807, 937, 943
PflFI GACNNNGTC 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 8 cut(s) 23, 199, 202, 847, 850, 916, 1066, 1069
Ple19I CGATCG 1 cut(s) 1225
PleI GAGTC 5 cut(s) 275, 332, 441, 535, 616
PpsI GAGTC 5 cut(s) 275, 332, 441, 535, 616
Psp1406I AACGTT 1 cut(s) 1278
PspFI CCCAGC 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 671, 840, 969
PsuI RGATCY 1 cut(s) 1055
PsyI GACNNNGTC 1 cut(s) 53
PvuI CGATCG 1 cut(s) 1225
RsaI GTAC 5 cut(s) 160, 221, 497, 671, 1171
RsaNI GTAC 5 cut(s) 159, 220, 496, 670, 1170
SacII CCGCGG 2 cut(s) 849, 915
SatI GCNGC 8 cut(s) 22, 198, 201, 846, 849, 915, 1065, 1068
Sau3AI GATC 3 cut(s) 1055, 1191, 1222
SchI GAGTC 5 cut(s) 275, 333, 442, 536, 617
ScrFI CCNGG 9 cut(s) 346, 371, 438, 439, 859, 956, 972, 973, 1053
SduI GDGCHC 3 cut(s) 399, 684, 972
SfaNI GCATC 4 cut(s) 511, 576, 969, 1051
Sfr303I CCGCGG 2 cut(s) 849, 915
SfuI TTCGAA 2 cut(s) 641, 702
SgrBI CCGCGG 2 cut(s) 849, 915
SmaI CCCGGG 2 cut(s) 439, 973
SrfI GCCCGGGC 1 cut(s) 973
SspMI CTAG 3 cut(s) 1140, 1233, 1269
StyD4I CCNGG 9 cut(s) 344, 369, 436, 437, 857, 954, 970, 971, 1051
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 1 cut(s) 781
TaiI ACGT 5 cut(s) 495, 750, 1005, 1168, 1281
TatI WGTACW 1 cut(s) 495
TauI GCSGC 7 cut(s) 24, 200, 203, 848, 851, 917, 1070
TfiI GAWTC 8 cut(s) 116, 449, 473, 532, 643, 807, 937, 943
TseI GCWGC 1 cut(s) 1064
TspDTI ATGAA 2 cut(s) 647, 1253
TspGWI ACGGA 1 cut(s) 87
TspMI CCCGGG 2 cut(s) 437, 971
Tth111I GACNNNGTC 1 cut(s) 53
XapI RAATTY 6 cut(s) 263, 409, 443, 655, 698, 704
XmaI CCCGGG 2 cut(s) 437, 971
XmiI GTMKAC 1 cut(s) 611
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 3 cut(s) 1140, 1233, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.