Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002359

Physical Location & Seq

Genomic Coordinates Forward (+)

18773061 .. 18776590

Gene Structure 3530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24780.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGATATGTGACGACTTCGACGCGGAATCGATGCTGGATGAGGAGATTGATGAGGGTATTGATACCATCATGGGGAGTAGTACAACCAGCATGAACATAGACTCAGTCGACGAGTCGTCCACTAGCAGTGACCAAATGATGATGAGTTCATGCTATGGCTACCCAATGGGGTTAGGATTTGGCGGAAACTTGCAATTCGGGTTCGGATTCAGACGAGAAGGAGTGAGGCCGTTGAGGCAAGTCGACGACAGGGTGAACCGGTGGAGTTTCCCCACCGTCGATGTTCTTGAAATCTCGCCCAGATTCAACAAATCTCGGCCGTCGCCACCTTCCGCGGGGAAGAAGAAGAAGAAGAAGAAAAAGATGGAGAAGCTGGCGGTGGTGGAGTCGAAGCTGGTGGAGAAGAGTGGTAGTCTGAAGATGAGTCCGAGTATGAAGGAGGAGGAGGAGGAGGAGGAGCCGGAAGCAGAGTGTGGGCAGTTGATGCTGAAGCTAAACTATGACGACGTTTTGAGTGCTTGGTCAGACAAAGCGTCTCCGTTCCCGGAGGAGCTTCAGGACGGCGCTGTTGGAAACGATGTCTCTACCAGGCTGGCGCAGATTGATTTATTCACGGACACCAGTGGGTTGAGAGAGGCTAGCGTCCTCCGTTACAAGGAGAAGCGGCGTACACGCTTCTTCTCGAAAAAGATCATGTACCAAGTTCGTAAAGTTAACGTTGATCGACGGCCAAGAATGAAGGGTAGATTTGTGAGAAGGCCAAACTCTAGCACAAATGGCCAAAGACAAAAGGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

268

Amino Acids

30.39

Weight (kDa)

6.53

Isoelectric Point (pI)

67.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25990 AT4G25990 AT4G25990 AT5G57180 AT5G57180 AT5G57180 AT5G57180
fragaria_vesca	FvH4_2g01490 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_4g07270 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780 FvH4_6g24780
malus_domestica	MD13G1239300.v1.1 MD16G1248400.v1.1
prunus_persica	Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1 Prupe.1G074900_v2.0.a1
pyrus_communis	pycom13g21340 pycom16g20820
rosa_chinensis	RchiOBHm_Chr4g0399481
rosa_laevigata	RLG00000009263
rosa_multiflora	Rmu_sc0002285.1_g000032 Rmu_sc0004311.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344410
rosa_rugosa	Rorug04G0017200 Rorug04G0017300 Rorug04G0017300
rosa_samantha	Rh4AG095100 Rh4BG092500 Rh4CG103600 Rh4DG087400
rosa_wichuraiana	Rw4G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	111, 246
AccII	CGCG	2 cut(s)	26, 338
AciI	CCGC	6 cut(s)	26, 186, 336, 338, 380, 667
AclI	AACGTT	1 cut(s)	720
AcoI	YGGCCR	3 cut(s)	320, 731, 781
AcuI	CTGAAG	3 cut(s)	440, 512, 542
AfaI	GTAC	3 cut(s)	85, 673, 701
AfiI	CCNNNNNNNGG	3 cut(s)	75, 338, 658
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	293, 310
AhdI	GACNNNNNGTC	2 cut(s)	118, 535
AjnI	CCWGG	1 cut(s)	590
AluBI	AGCT	4 cut(s)	376, 397, 496, 556
AluI	AGCT	4 cut(s)	376, 397, 496, 556
Alw26I	GTCTC	2 cut(s)	543, 589
AoxI	GGCC	5 cut(s)	230, 320, 731, 761, 781
AsiGI	ACCGGT	1 cut(s)	261
AspLEI	GCGC	2 cut(s)	569, 601
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	783
BccI	CCATC	2 cut(s)	77, 361
BceAI	ACGGC	4 cut(s)	217, 307, 580, 746
BciT130I	CCWGG	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	543, 589
BfaI	CTAG	3 cut(s)	126, 642, 771
BfoI	RGCGCY	1 cut(s)	570
BglI	GCCNNNNNGGC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	668
BlsI	GCNGC	1 cut(s)	669
Bme1390I	CCNGG	2 cut(s)	548, 592
BmeRI	GACNNNNNGTC	2 cut(s)	118, 535
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	548, 592
BmsI	GCATC	2 cut(s)	24, 477
BmtI	GCTAGC	1 cut(s)	645
BpuMI	CCSGG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 338, 658
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	592
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	75, 338, 658
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	8 cut(s)	59, 458, 461, 464, 467, 470, 473, 566
BseX3I	CGGCCG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	26, 338
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	5 cut(s)	232, 322, 733, 763, 783
BshTI	ACCGGT	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	262, 464, 548
BslI	CCNNNNNNNGG	3 cut(s)	75, 338, 658
BsmAI	GTCTC	2 cut(s)	543, 589
BsmBI	CGTCTC	1 cut(s)	543
BsnI	GGCC	5 cut(s)	232, 322, 733, 763, 783
Bsp143I	GATC	2 cut(s)	693, 724
BspACI	CCGC	6 cut(s)	26, 186, 336, 338, 380, 667
BspANI	GGCC	5 cut(s)	232, 322, 733, 763, 783
BspCNI	CTCAG	1 cut(s)	119
BspDI	ATCGAT	1 cut(s)	32
BspFNI	CGCG	2 cut(s)	26, 338
BspLI	GGNNCC	1 cut(s)	462
BspOI	GCTAGC	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	693, 724
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	3 cut(s)	378, 597, 643
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	2 cut(s)	26, 338
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	569, 601
BstKTI	GATC	2 cut(s)	696, 727
BstMAI	GTCTC	2 cut(s)	543, 589
BstMBI	GATC	2 cut(s)	693, 724
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 487, 780
BstNI	CCWGG	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	546, 590
BstUI	CGCG	2 cut(s)	26, 338
BstZI	CGGCCG	1 cut(s)	320
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	5 cut(s)	232, 322, 733, 763, 783
BsuTUI	ATCGAT	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 631
Cac8I	GCNNGC	3 cut(s)	378, 597, 643
CfoI	GCGC	2 cut(s)	569, 601
Cfr10I	RCCGGY	1 cut(s)	261
Cfr42I	CCGCGG	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	3 cut(s)	32, 525, 634
Csp6I	GTAC	3 cut(s)	84, 672, 700
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	4 cut(s)	73, 94, 153, 697
CviQI	GTAC	3 cut(s)	84, 672, 700
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	695, 726
DpnII	GATC	2 cut(s)	693, 724
DriI	GACNNNNNGTC	2 cut(s)	118, 535
EaeI	YGGCCR	3 cut(s)	320, 731, 781
EagI	CGGCCG	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	401
Eam1105I	GACNNNNNGTC	2 cut(s)	118, 535
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	201
EclXI	CGGCCG	1 cut(s)	320
Eco52I	CGGCCG	1 cut(s)	320
Eco57I	CTGAAG	3 cut(s)	440, 512, 542
EcoRII	CCWGG	1 cut(s)	590
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	4 cut(s)	76, 97, 156, 700
FatI	CATG	4 cut(s)	72, 93, 152, 696
FauI	CCCGC	1 cut(s)	331
FblI	GTMKAC	2 cut(s)	111, 246
Fnu4HI	GCNGC	1 cut(s)	668
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	668
FspBI	CTAG	3 cut(s)	126, 642, 771
GlaI	GCGC	2 cut(s)	568, 600
GluI	GCNGC	1 cut(s)	668
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	5 cut(s)	232, 322, 733, 763, 783
HapII	CCGG	3 cut(s)	262, 464, 548
HgaI	GACGC	3 cut(s)	32, 525, 634
HhaI	GCGC	2 cut(s)	569, 601
Hin1II	CATG	4 cut(s)	76, 97, 156, 700
Hin6I	GCGC	2 cut(s)	567, 599
HinP1I	GCGC	2 cut(s)	567, 599
HincII	GTYRAC	3 cut(s)	112, 247, 718
HindII	GTYRAC	3 cut(s)	112, 247, 718
HinfI	GANTC	7 cut(s)	29, 104, 116, 210, 306, 389, 427
HpaI	GTTAAC	1 cut(s)	718
HpaII	CCGG	3 cut(s)	262, 464, 548
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	6 cut(s)	112, 123, 247, 259, 674, 718
Hpy188I	TCNGA	5 cut(s)	209, 215, 420, 432, 529
Hpy188III	TCNNGA	3 cut(s)	290, 560, 685
Hpy8I	GTNNAC	6 cut(s)	112, 123, 247, 259, 674, 718
Hpy99I	CGWCG	7 cut(s)	26, 116, 251, 284, 328, 512, 732
HpyAV	CCTTC	5 cut(s)	215, 342, 433, 736, 753
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	510, 720
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 487, 780
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	2 cut(s)	510, 720
Hsp92II	CATG	4 cut(s)	76, 97, 156, 700
HspAI	GCGC	2 cut(s)	567, 599
KspAI	GTTAAC	1 cut(s)	718
KspI	CCGCGG	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	693, 724
LmnI	GCTCC	2 cut(s)	460, 553
LweI	GCATC	2 cut(s)	24, 477
MaeI	CTAG	3 cut(s)	126, 642, 771
MaeII	ACGT	2 cut(s)	510, 720
MaeIII	GTNAC	3 cut(s)	11, 131, 653
MalI	GATC	2 cut(s)	695, 726
MboI	GATC	2 cut(s)	693, 724
MboII	GAAGA	9 cut(s)	355, 358, 361, 364, 367, 370, 418, 433, 673
MlsI	TGGCCA	1 cut(s)	783
MluCI	AATT	1 cut(s)	197
MluNI	TGGCCA	1 cut(s)	783
MlyI	GAGTC	4 cut(s)	98, 125, 398, 436
MmeI	TCCRAC	1 cut(s)	553
Mox20I	TGGCCA	1 cut(s)	783
MscI	TGGCCA	1 cut(s)	783
MseI	TTAA	1 cut(s)	717
Msp20I	TGGCCA	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	3 cut(s)	262, 464, 548
MspR9I	CCNGG	2 cut(s)	548, 592
MvaI	CCWGG	1 cut(s)	592
MvnI	CGCG	2 cut(s)	26, 338
MwoI	GCNNNNNNNGC	3 cut(s)	238, 487, 780
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	693, 724
NheI	GCTAGC	1 cut(s)	641
NlaIII	CATG	4 cut(s)	76, 97, 156, 700
NlaIV	GGNNCC	1 cut(s)	462
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	11, 131
PfeI	GAWTC	3 cut(s)	29, 210, 306
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	546
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	669
PleI	GAGTC	4 cut(s)	98, 124, 397, 435
PpsI	GAGTC	4 cut(s)	98, 124, 397, 435
Psp1406I	AACGTT	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	462
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	3 cut(s)	85, 673, 701
RsaNI	GTAC	3 cut(s)	84, 672, 700
SacII	CCGCGG	1 cut(s)	339
SalI	GTCGAC	2 cut(s)	110, 245
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	1 cut(s)	668
Sau3AI	GATC	2 cut(s)	693, 724
SchI	GAGTC	4 cut(s)	98, 125, 398, 436
ScrFI	CCNGG	2 cut(s)	548, 592
SetI	ASST	7 cut(s)	334, 378, 399, 498, 513, 558, 723
SfaNI	GCATC	2 cut(s)	24, 477
Sfr303I	CCGCGG	1 cut(s)	339
SgrBI	CCGCGG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	6 cut(s)	26, 186, 336, 338, 380, 667
SspMI	CTAG	3 cut(s)	126, 642, 771
StyD4I	CCNGG	2 cut(s)	546, 590
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	513, 723
TaqI	TCGA	8 cut(s)	21, 32, 111, 246, 282, 392, 686, 727
TasI	AATT	1 cut(s)	197
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	1 cut(s)	670
TfiI	GAWTC	3 cut(s)	29, 210, 306
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	2 cut(s)	136, 631
TseFI	GTSAC	2 cut(s)	11, 131
Tsp45I	GTSAC	2 cut(s)	11, 131
TspDTI	ATGAA	4 cut(s)	110, 141, 452, 755
TspGWI	ACGGA	3 cut(s)	531, 632, 641
TspRI	CASTG	2 cut(s)	136, 631
Tth111I	GACNNNGTC	1 cut(s)	107
XmiI	GTMKAC	2 cut(s)	111, 246
XspI	CTAG	3 cut(s)	126, 642, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.